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1bgy

CYTOCHROME BC1 COMPLEX FROM BOVINE

Method: X-RAY DIFFRACTION D_max: 172.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bgy
deposition_date	1998-06-02
title	CYTOCHROME BC1 COMPLEX FROM BOVINE
keywords	ELECTRON TRANSPORT, CYTOCHROME, MEMBRANE PROTEIN; ELECTRON TRANSPORT
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	54.73 Å
rg_electron	53.84 Å
i0	2765140000.00
molecular_weight	446930.0 kDa
excluded_volume	561530 Å³
envelope_volume	806390 Å³
shell_volume	121270 Å³
envelope_diameter	170.7 Å
shell_rg	59.31 Å
envelope_rg	52.86 Å
shape_rg	53.84 Å
total_rg	54.02 Å
total_atoms	31486
n_residues	3977
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	172.3 Å
rg_real	54.59 Å
rg_real_error	1.40 Å
i0_real	2.7650e+09
i0_real_error	5.9510e+07
rg_reciprocal	54.82 Å
i0_reciprocal	2766000000.0000
total_estimate	0.8636
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	65.4 Å
skewness	0.221
kurtosis	-0.555
angular_range	— – 0.1450 Å⁻¹
current_alpha	0.0000
highest_alpha	296000000.0000
n_real_points	30
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.943; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.983; Smooth: 0.410

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4. Crystallography & Experiment

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5. Entities & Polymer Info (14)

Entity 1 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	49266.3 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,M
atom_count	31486

TATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF

Entity 2 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	46575.5 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,N

SLKVAPKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL

Entity 3 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	42620.3 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,O

MTNIRKSHPLMKIVNNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALMLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIENKLLKW

Entity 4 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	27323.3 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	D,P

SDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK

Entity 5 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	21640.6 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	E,Q

SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG

Entity 6 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	13371.2 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	F,R

AGRPAVSASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERKEREEWAKK

Entity 7 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	9606.0 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	G,S

GRQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYENDR

Entity 8 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	9189.1 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	H,T

GDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK

Entity 9 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	7964.3 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	I,U

MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVRY

Entity 10 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	7209.3 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	J,V

VAPTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK

Entity 11 polymer

description	CYTOCHROME BC1 COMPLEX
formula_weight	6370.4 kDa
ec_number	1.10.2.2
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	K,W

MLTRFLGPRYRQLARNWVPTAQLWGAVGAVGLVSATDSRLILDWVPYINGKFKKDD

Entity 12 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	4

Entity 13 non-polymer

description	HEME C
formula_weight	618.5 kDa
src_method	syn
entity_count	2

Entity 14 non-polymer

description	FE2/S2 (INORGANIC) CLUSTER
formula_weight	175.8 kDa
src_method	syn
entity_count	1

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6. Citations (1)

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length_a	130.110 Å
length_b	130.110 Å
length_c	720.940 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 65
int_tables_number	170
crystal_system	—

resolution	3.000 Å
resolution_low	20.000 Å
r_factor	—
r_work	0.3200
r_free	0.3600

fit	/app/data/saxs_computation/bg/1bgy/1bgy.fit
pddf	/app/data/pr_computation/bg/1bgy/1bgy.pr.out
profile	/app/data/saxs_computation/bg/1bgy/1bgy.dat

CYTOCHROME BC1 COMPLEX FROM BOVINE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (14)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 polymer

Polymer

Entity 6 polymer

Polymer

Entity 7 polymer

Polymer

Entity 8 polymer

Polymer

Entity 9 polymer

Polymer

Entity 10 polymer

Polymer

Entity 11 polymer

Polymer

Entity 12 non-polymer

Entity 13 non-polymer

Entity 14 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)