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1dpw

STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD

Method: X-RAY DIFFRACTION D_max: 51.3 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dpw
deposition_date	1999-12-28
title	STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD
keywords	PROTEIN-MPD COMPLEX, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	15.23 Å
rg_electron	13.92 Å
i0	4922640.00
molecular_weight	14755.0 kDa
excluded_volume	17984 Å³
envelope_volume	19783 Å³
shell_volume	12156 Å³
envelope_diameter	53.3 Å
shell_rg	19.59 Å
envelope_rg	14.29 Å
shape_rg	13.90 Å
total_rg	15.04 Å
total_atoms	1027
n_residues	129
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	51.3 Å
rg_real	15.16 Å
rg_real_error	0.34 Å
i0_real	4.9230e+06
i0_real_error	5.8880e+04
rg_reciprocal	15.17 Å
i0_reciprocal	4923000.0000
total_estimate	0.6128
solution_quality	REASONABLE a REASONABLE solution
n_peaks	3
r_peak_primary	20.1 Å
skewness	0.255
kurtosis	-0.144
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	899200.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.733; Stabil: 0.999; Sysdev: 0.256; Positv: 1.000; Valcen: 0.996; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	LYSOZYME
formula_weight	14331.2 kDa
ec_number	3.2.1.17
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1156

KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL

Entity 2 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
formula_weight	122.1 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	(4R)-2-METHYLPENTANE-2,4-DIOL
formula_weight	118.2 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	125

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6. Citations (1)

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length_a	77.510 Å
length_b	77.510 Å
length_c	37.420 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	1.640 Å
resolution_low	40.000 Å
r_factor	—
r_work	0.1780
r_free	0.2220

fit	/app/data/saxs_computation/dp/1dpw/1dpw.fit
pddf	/app/data/pr_computation/dp/1dpw/1dpw.pr.out
profile	/app/data/saxs_computation/dp/1dpw/1dpw.dat

STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction