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1at5

HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE

Method: X-RAY DIFFRACTION D_max: 51.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1at5
deposition_date	1997-08-18
title	HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE
keywords	SUCCINIMIDE, HYDROLASE, O-GLYCOSYL HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	15.25 Å
rg_electron	13.98 Å
i0	5115570.00
molecular_weight	15037.0 kDa
excluded_volume	18312 Å³
envelope_volume	20043 Å³
shell_volume	12259 Å³
envelope_diameter	51.7 Å
shell_rg	19.68 Å
envelope_rg	14.29 Å
shape_rg	13.95 Å
total_rg	15.10 Å
total_atoms	1044
n_residues	127
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	51.8 Å
rg_real	15.17 Å
rg_real_error	0.31 Å
i0_real	5.1160e+06
i0_real_error	5.7460e+04
rg_reciprocal	15.18 Å
i0_reciprocal	5116000.0000
total_estimate	0.8627
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	19.7 Å
skewness	0.244
kurtosis	-0.193
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	1037000.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.745; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.983

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	LYSOZYME
formula_weight	14312.2 kDa
ec_number	3.2.1.17
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1142

KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSNGNGMNAWVAWRNRCKGTDVQAWIRGCRL

Entity 2 branched

description	;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	627.6 kDa
src_method	man
entity_count	1

Entity 3 non-polymer

description	SODIUM ION
formula_weight	23.0 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	95

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6. Citations (2)

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length_a	78.610 Å
length_b	78.610 Å
length_c	38.780 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	1.800 Å
resolution_low	8.000 Å
r_factor	0.1820
r_work	0.1820
r_free	0.2330

fit	/app/data/saxs_computation/at/1at5/1at5.fit
pddf	/app/data/pr_computation/at/1at5/1at5.pr.out
profile	/app/data/saxs_computation/at/1at5/1at5.dat

HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction