|
132L
STRUCTURAL CONSEQUENCES OF REDUCTIVE METHYLATION OF LYSINE RESIDUES IN HEN EGG WHITE LYSOZYME: AN X-RAY ANALYSIS AT 1.8 ANGSTROMS RESOLUTION
Deposited 1993-06-02
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
193L
THE 1.33 A STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME
Deposited 1995-09-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;pH 4.3
|
Resolution 1.33 Å
R-free 0.226
|
|
194L
THE 1.40 A STRUCTURE OF SPACEHAB-01 HEN EGG WHITE LYSOZYME
Deposited 1995-09-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;pH 4.3
|
Resolution 1.40 Å
R-free 0.226
|
|
1A2Y
HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3
Deposited 1998-01-13
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:D18A
|
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;pH 6.5
|
Resolution 1.50 Å
R-free 0.251
|
|
1AKI
THE STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG-WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION
Deposited 1997-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.48;pH 4.48
|
Resolution 1.50 Å
|
|
1AT5
HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE
Deposited 1997-08-18
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2;CRYSTALS WERE PREPARED AT 277K FROM A SOLUTION CONTAINING 20 MG/ML PROTEIN, 7 MM TRI-N-ACETYLCHITOTRIOSE, 25 MG/ML SODIUM CHLORIDE, AND 100 MM ACETATE BUFFER PH 4.2, BY EQUILIBRATING THE SOLUTION AGAINST A RESERVOIR SOLUTION CONTAINING 50 MG/ML SODIUM CHLORIDE AND 100 MM ACETATE BUFFER PH 4.2.
|
Resolution 1.80 Å
R-free 0.233
|
|
1AT6
HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE
Deposited 1997-08-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;277 K;CRYSTALS WERE PREPARED AT 277 K FROM THE DROPLET MIXTURE OF A 20 MG/ML PROTEIN SOLUTION CONTAINING 7 MM TRI-N-ACETYLCHITOTRIOSE (NAG3) AND 50 MM ACETATE BUFFER PH 4.2 WITH EQUAL VOLUME OF A RESERVOIR SOLUTION CONTAINING 2.0 M AMMONIUM FORMATE AND 100 MM N-(2-HYDROXYETHYL)PIPERAZINE-N'-(2-ETHANESULFONIC ACID) (HEPES) BUFFER PH 7.5. PRIOR TO THE DIFFRACTION DATA COLLECTION, THE CRYSTAL WAS SOAKED IN A CRYOPROTECTANT SOLUTION CONTAINING 30 % (W/V) POLYETHYLENE GLYCOL 20,000, 2.2 M AMMONIUM FORMATE, 100 MM HEPES BUFFER PH 7.5, AND 7 MM NAG3 FOR 2 MINUTES AT 277 K.
|
Resolution 1.80 Å
R-free 0.230
|
|
1AZF
CHICKEN EGG WHITE LYSOZYME CRYSTAL GROWN IN BROMIDE SOLUTION
Deposited 1997-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;pH 4.6
|
Resolution 1.80 Å
R-free 0.240
|
|
1B0D
Structural effects of monovalent anions on polymorphic lysozyme crystals
Deposited 1998-11-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TSU PARA-TOLUENE SULFONATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;291 K;THE CRYSTAL WAS OBTAINED IN PRESENCE OF NAPTS WITH A FINAL PROTEIN CONCENTRATION OF 40.5 MG/ML IN HANGING DROPS USING VAPOR DIFFUSION METHOD. THE EQUILIBRATION AT 291K WAS DONE AGAINST A RESERVOIR SOLUTION CONTAINING 90 MM NAPTS, 50 MM SODIUM ACETATE ADJUSTED AT PH 4.5., vapor diffusion - hanging drop
|
Resolution 1.84 Å
R-free 0.241
|
|
1B2K
Structural effects of monovalent anions on polymorphic lysozyme crystals
Deposited 1998-11-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;291 K;THE ISOIONIC PROTEIN HEWL WAS ACIDIFIED BY ADDING OF HI UNTIL THE PH 4.5 WAS REACHED AT 291K WERE 25 MG/ML OF PROTEIN AND 0.07 M OF NAI VERSUS A WELL CONTAINING 0.14 M OF NAI AT PH4.5
|
Resolution 1.60 Å
R-free 0.237
|
|
1B2K
Structural effects of monovalent anions on polymorphic lysozyme crystals
Deposited 1998-11-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;291 K;THE ISOIONIC PROTEIN HEWL WAS ACIDIFIED BY ADDING OF HI UNTIL THE PH 4.5 WAS REACHED AT 291K WERE 25 MG/ML OF PROTEIN AND 0.07 M OF NAI VERSUS A WELL CONTAINING 0.14 M OF NAI AT PH4.5
|
Resolution 1.60 Å
R-free 0.237
|
|
1BGI
ORTHORHOMBIC LYSOZYME CRYSTALLIZED AT HIGH TEMPERATURE (310K)
Deposited 1998-05-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 4.7;310 K;CRYSTALLIZATION WAS PERFORMED BY THE BATCH METHOD AT 310 K. THE SAME WAY AS DESCRIBED BY JOLLES AND BERTHOU (1972)., pH 4.7, batch method
|
Resolution 1.70 Å
R-free 0.216
|
|
1BHZ
LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF HEN EGG WHITE LYSOZYME FROM MASC DATA
Deposited 1998-06-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
PROTEIN WAS CRYSTALLIZED FROM SODIUM CHLORIDE SOLUTIONS
|
Resolution 3.90 Å
R-free 0.308
|
|
1BVK
HUMANIZED ANTI-LYSOZYME FV COMPLEXED WITH LYSOZYME
Deposited 1998-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;pH 6.5
|
Resolution 2.70 Å
R-free 0.297
|
|
1BVK
HUMANIZED ANTI-LYSOZYME FV COMPLEXED WITH LYSOZYME
Deposited 1998-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;pH 6.5
|
Resolution 2.70 Å
R-free 0.297
|
|
1BVX
THE 1.8 A STRUCTURE OF GEL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME
Deposited 1998-09-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
grown in gelled protein solution with agarose;pH 4.5;HEWL CRYSTALS WERE GROWN IN A GELLED PROTEIN SOLUTION WITH AGAROSE (SIGMA, TYPE VII: OF LOW GELLING TEMPERATURE), 4 % MPD IN ACETATE BUFFER (PH 4.5), THE PRECIPITATING AGENT SOL MPD IN BUFFER. THE GLASS TUBE USED WAS 6 CM TALL WITH AN IN CRYSTALS OF TYPICAL DIMENSIONS $SIM$0.7 $TIMES$ 0.6 $TIM, grown in gelled protein solution with agarose
|
Resolution 1.80 Å
R-free 0.217
|
|
1BWH
THE 1.8 A STRUCTURE OF GROUND CONTROL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME
Deposited 1998-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;CRYSTALLISATION TOOK PLACE AS A GROUND CONTROL TO HEWL CRYSTALLISATION IN THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE SHUTTLE'S LIFE AND MICROGRAVITY SPACELAB (LMS) MISSION (STS-78). A SOLUTION OF 21 MG OF HEN EGG WHITE LYSOZYME (3 X CRYSTALLIZED, DIALYSED AND LYOPHILIZED POWDER OF CHICKEN EGG WHITE LYSOZYME SUPPLIED BY SIGMA, L-6876 BATCH NUMBER, LOT 53H7145) DISSOLVED IN 250 UL 0.04 M ACETATE BUFFER (PH 4.7) WAS USED TO FILL THE PROTEIN CHAMBER (188 UL). THE SALT CHAMBERS (541 UL) WERE FILLED WITH 1.35 M NACL AND THE BUFFER CHAMBER (59 UL) WITH 0.04 M ACETATE BUFFER (PH 4.7). SODIUM AZIDE WAS ALSO ADDED TO THE PROTEIN AND BUFFER SOLUTION AS AN ANTI-FUNGAL AGENT (1.92 MG PER 188 UL). CRYSTALLISATION TOOK PLACE AT 20+/-1 C.
|
Resolution 1.80 Å
R-free 0.233
|
|
1BWI
THE 1.8 A STRUCTURE OF MICROBATCH OIL DROP GROWN TETRAGONAL HEN EGG WHITE LYSOZYME
Deposited 1998-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
drops under paraffin oil;pH 4.7;291 K;A SOLUTION CONTAINING 40 MG/ML OF LYSOZYME (SIGMA L-6876, BATCH NUMBER, LOT 65H7025, IE A DIFFERENT SIGMA SAMPLE TO THE EXPERIMENTS DESCRIBED ABOVE) IN 10 MM SODIUM CITRATE BUFFER PH 4.7 WAS MIXED IN AN EPPENDORF TUBE WITH EQUAL VOLUMES OF 12 % SODIUM CHLORIDE (BDH). THE MIXTURE WAS FILTERED THROUGH A 0.22 UM FILTER AND 8 UL DROPS WERE MANUALLY DISPENSED UNDER PARAFFIN OIL USING A GILSON MICRO PIPPETTE. OVER 20 IDENTICAL DROPS WERE SET UP AND, WITHIN A WEEK, SINGLE CRYSTALS TYPICALLY MEASURING 0.5 X 0.4 X 0.3 MM WERE OBTAINED IN MOST OF THE DROPS. CRYSTALLISATION TOOK PLACE AT A TEMPERATURE OF 18 - 20 C., drops under paraffin oil, temperature 291K
|
Resolution 1.80 Å
R-free 0.206
|
|
1BWJ
THE 1.8 A STRUCTURE OF MICROGRAVITY GROWN TETRAGONAL HEN EGG WHITE LYSOZYME
Deposited 1998-09-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
microgravity experiment;pH 4.7;293 K;CRYSTALLISATION TOOK PLACE IN THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE SHUTTLE'S LIFE AND MICROGRAVITY SPACELAB (LMS) MISSION (STS-78). A SOLUTION OF 21 MG OF HEN EGG WHITE LYSOZYME (3 X CRYSTALLIZED, DIALYSED AND LYOPHILIZED POWDER OF CHICKEN EGG WHITE LYSOZYME SUPPLIED BY SIGMA, L-6876 BATCH NUMBER, LOT 53H7145) DISSOLVED IN 250 UL 0.04 M ACETATE BUFFER (PH 4.7) WAS USED TO FILL THE PROTEIN CHAMBER (188 UL). THE SALT CHAMBERS (541 UL) WERE FILLED WITH 1.35 M NACL AND THE BUFFER CHAMBER (59 UL) WITH 0.04 M ACETATE BUFFER (PH 4.7). SODIUM AZIDE WAS ALSO ADDED TO THE PROTEIN AND BUFFER SOLUTION AS AN ANTI-FUNGAL AGENT (1.92 MG PER 188 UL). CRYSTALLISATION TOOK PLACE AT 20+/-0.1 C., microgravity experiment, temperature 293K
|
Resolution 1.80 Å
R-free 0.213
|
|
1C08
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Deposited 1999-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;293 K;HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.175
|
|
1C10
CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF XENON (8 BAR)
Deposited 1999-07-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 6
XE XENON × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.5;SODIUM CHLORIDE, PH = 5.5
|
Resolution 2.03 Å
|
|
1DPW
STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD
Deposited 1999-12-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 2
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;2-METHYL-2,4-PENTANEDIOL, TRISHYDROXYMETHYLAMINOMETHANE, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.64 Å
R-free 0.222
|
|
1DPX
STRUCTURE OF HEN EGG-WHITE LYSOZYME
Deposited 1999-12-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;SODIUM ACETATE, SODIUM CHLORIDE, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å
R-free 0.246
|
|
1DQJ
CRYSTAL STRUCTURE OF THE ANTI-LYSOZYME ANTIBODY HYHEL-63 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Deposited 2000-01-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;PEG 4K, Ammonium acetate, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.250
|
|
1E8L
NMR solution structure of hen lysozyme
Deposited 2000-09-27
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 3.8;308 K;Pressure 1
|
Resolution not provided
|
|
1F0W
CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5
Deposited 2000-05-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;pH 6.5
|
Resolution 1.90 Å
R-free 0.279
|
|
1F10
CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5 AT 88% RELATIVE HUMIDITY
Deposited 2000-05-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;pH 6.5
|
Resolution 1.70 Å
R-free 0.268
|
|
1F3J
HISTOCOMPATIBILITY ANTIGEN I-AG7
Deposited 2000-06-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain P
29–42(14 aa)
Fragment:RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
Chain Q
29–42(14 aa)
Fragment:RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.4;pH 4.4
|
Resolution 3.10 Å
R-free 0.299
|
|
1FDL
CRYSTALLOGRAPHIC REFINEMENT OF THE THREE-DIMENSIONAL STRUCTURE OF THE FAB D1.3-LYSOZYME COMPLEX AT 2.5-ANGSTROMS RESOLUTION
Deposited 1990-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
|
|
1FLQ
HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE
Deposited 2000-08-15
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:G117A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;295 K;sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.80 Å
R-free 0.237
|
|
1FLU
HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE
Deposited 2000-08-15
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:G67A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;295 K;sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.78 Å
R-free 0.250
|
|
1FLW
HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE
Deposited 2000-08-15
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:G71A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;295 K;sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.81 Å
R-free 0.231
|
|
1FLY
HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE
Deposited 2000-08-15
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:G102A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;295 K;sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.83 Å
R-free 0.232
|
|
1FN5
HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE
Deposited 2000-08-21
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:G49A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;295 K;sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.78 Å
R-free 0.229
|
|
1G7H
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3(VLW92A)
Deposited 2000-11-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;298 K;15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.85 Å
|
|
1G7I
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92F)
Deposited 2000-11-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;15-18%poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.248
|
|
1G7J
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92H)
Deposited 2000-11-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.75 Å
R-free 0.229
|
|
1G7L
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92S)
Deposited 2000-11-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.240
|
|
1G7M
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92V)
Deposited 2000-11-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;14% poly(ethylene glycol) 8000; 0.1 M sodium acetate; 0.05 M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.226
|
|
1GPQ
Structure of ivy complexed with its target, HEWL
Deposited 2001-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain C
19–147(129 aa)
Chain D
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9;15% PEG 4000, 5% GLYCEROL, CHES BUFFER 0.1M PH 9.0, PROTEIN CONCENTRATION: 5MG.ML-1
|
Resolution 1.60 Å
R-free 0.212
|
|
1GWD
Tri-iodide derivative of hen egg-white lysozyme
Deposited 2002-03-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 5
EDO 1,2-ETHANEDIOL × 2
CMO CARBON MONOXIDE × 1
CL CHLORIDE ION × 7
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;2M NACL, 0.025M SODIUM ACETATE AT PH4.7,0.1% SODIUM AZIDE, 25% ETHYLENE GLYCOL AND THEN SOAKED IN AN EQUIVALENT SOLUTION WITH 50MM KI/50MM I2., pH 4.70
|
Resolution 1.77 Å
R-free 0.211
|
|
1GXV
Solution structure of lysozyme at low and high pressure
Deposited 2002-04-12
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain 2
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 2;298 K;Ionic strength (raw mmCIF value) 0.1;Pressure 1
|
Resolution not provided
|
|
1GXX
Solution structure of lysozyme at low and high pressure
Deposited 2002-04-15
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 2;298 K;Ionic strength (raw mmCIF value) 0.1;Pressure 2000
|
Resolution not provided
|
|
1H6M
Covalent glycosyl-enzyme intermediate of hen egg white lysozyme
Deposited 2001-06-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:YES
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;289 K;CRYSTALS OF THE HEWL COVALENT INTERMEDIATE WERE GROWN BY THE HANGING-DROPLET VAPOUR DIFFUSION METHOD OVER 4 DAYS AT 16 C. THE DROPLET CONTAINED 2.5 UL OF A SOLUTION OF 7.5 MG/ML HEWL(E35Q), 20 MM NAG2FGLCF, 200 MM SODIUM ACETATE (NAOAC) BUFFER PH 5.0 AND 2.5 UL OF RESERVOIR SOLUTION (200MM) NAOAC, CONTAINING 4.0 % NACL (W/V), PH 4.5 WAS SUSPENDED OVER THE RESERVOIR SOLUTION.
|
Resolution 1.64 Å
R-free 0.222
|
|
1H87
Gadolinium derivative of tetragonal Hen Egg-White Lysozyme at 1.7 A resolution
Deposited 2001-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
CL CHLORIDE ION × 4
GD GADOLINIUM ATOM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;NACL 0.8 M, SODIUM ACETATE 50 MM, PH4.5, GD-HP-DO3A 100MM, [PROT]=40 MG/ML, 293 K, pH 4.50
|
Resolution 1.72 Å
R-free 0.210
|
|
1HC0
structure of lysozyme with periodate
Deposited 2001-04-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 10
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;SOAKED AT PERIODATE, pH 4.50
|
Resolution 1.82 Å
|
|
1HEL
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1HEM
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HEN
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HEO
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HEP
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HEQ
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HER
STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME
Deposited 1992-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1HEW
REFINEMENT OF AN ENZYME COMPLEX WITH INHIBITOR BOUND AT PARTIAL OCCUPANCY. HEN EGG-WHITE LYSOZYME AND TRI-N-ACETYLCHITOTRIOSE AT 1.75 ANGSTROMS RESOLUTION
Deposited 1992-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.75 Å
|
|
1HF4
STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS
Deposited 2000-11-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;CRYSTALS OF NITRATE-LYSOZYME WERE GROWN UNDER A MICRO GRAVITY ENVIRONMENT DURING THE USML-2 MISSION LAUNCHED ON OCTOBER 1995 (SHUTTLE COLUMBIA). THE CRYSTALLIZATION SETUP WAS THE APCF DEVELOPPED BY EUROPEAN SPACE AGENCY. PROTEIN CONCENTRATION 10 MG/ML IN 50 MM SODIUM ACETATE BUFFER AT PH 4.5. GRADIENT CONCENTRATION APPLIED FROM 0 TO FINAL 290 MM AT 293K
|
Resolution 1.45 Å
R-free 0.256
|
|
1HF4
STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS
Deposited 2000-11-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
NO3 NITRATE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;CRYSTALS OF NITRATE-LYSOZYME WERE GROWN UNDER A MICRO GRAVITY ENVIRONMENT DURING THE USML-2 MISSION LAUNCHED ON OCTOBER 1995 (SHUTTLE COLUMBIA). THE CRYSTALLIZATION SETUP WAS THE APCF DEVELOPPED BY EUROPEAN SPACE AGENCY. PROTEIN CONCENTRATION 10 MG/ML IN 50 MM SODIUM ACETATE BUFFER AT PH 4.5. GRADIENT CONCENTRATION APPLIED FROM 0 TO FINAL 290 MM AT 293K
|
Resolution 1.45 Å
R-free 0.256
|
|
1HSW
LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE)
Deposited 1998-06-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9.6;pH 9.6
|
Resolution 2.00 Å
R-free 0.291
|
|
1HSX
LYSOZYME GROWN AT BASIC PH AND ITS LOW HUMIDITY VARIANT
Deposited 1998-06-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9.6;pH 9.6
|
Resolution 1.90 Å
R-free 0.267
|
|
1IC4
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
Deposited 2001-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;293 K;HEPES, MPD, PEG6000, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.50 Å
R-free 0.279
|
|
1IC5
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX
Deposited 2001-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;293 K;HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.252
|
|
1IC7
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX
Deposited 2001-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;293 K;HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.230
|
|
1IEE
STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME AT 0.94 A FROM CRYSTALS GROWN BY THE COUNTER-DIFFUSION METHOD
Deposited 2001-04-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Counter-Diffusion in modified APCF reactors;pH 4.5;293 K;CRYSTALLISATION TOOK PLACE IN
THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN
CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE
SHUTTLE'S STS-95 MISSION. A NEW APCF REACTOR WITH A LONG
PROTEIN CHAMBER (67 MM) WAS DESIGNED TO PERFORM
CRYSTALLIZATION USING THE COUNTER-DIFFUSION METHOD UNDER
MICROGRAVITY CONDITIONS. THE PROTEIN CHAMBER WAS FILLED
WITH A SOLUTION OF 99 MG/ML OF HEN EGG WHITE LYSOZYME
(SUPPLIED BY SEIKAGAKU, BATCH NUMBER 100940, LOT E96302)
DISSOLVED IN 0.05 M ACETATE BUFFER (PH 4.5). THE SALT
CHAMBER CONTAINED 20% W/V NACL AND 0.05 M ACETATE BUFFER
(PH 4.5). THE ROTATORY PLUG CONNECTING THE PROTEIN AND
THE SALT CHAMBERS WAS FILLED WITH 10% W/V NACL, 0.5% W/V
AGAROSE GEL AND 0.05 M ACETATE BUFFER. CRYSTALLISATION
TOOK PLACE IN MICROGRAVITY AT 20+/-0.1 C., Counter-Diffusion in modified APCF reactors, temperature 293K
|
Resolution 0.94 Å
R-free 0.151
|
|
1IO5
HYDROGEN AND HYDRATION OF HEN EGG-WHITE LYSOZYME DETERMINED BY NEUTRON DIFFRACTION
Deposited 2001-01-14
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
concentration gradient method;pH 7;291 K;NiCl2, pH 7.0, concentration gradient method, temperature 291K
|
Resolution 2.00 Å
R-free 0.323
|
|
1IOQ
STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION
Deposited 2001-03-28
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:M12F/L56F
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, Na-acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.79 Å
|
|
1IOR
STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION
Deposited 2001-03-28
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:M12L/L56F
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, Na-acetete, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.76 Å
|
|
1IOS
STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION
Deposited 2001-03-28
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:M12F
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, Na-acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.76 Å
|
|
1IOT
STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION
Deposited 2001-03-28
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:M12L
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, Na-acetete, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.75 Å
|
|
1IR7
IM mutant of lysozyme
Deposited 2001-09-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:I78M
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å
|
|
1IR8
IM mutant of lysozyme
Deposited 2001-09-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:I58M
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.63 Å
|
|
1IR9
IM mutant of lysozyme
Deposited 2001-09-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:I98M
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;296 K;NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å
|
|
1J1O
Crystal Structure of HyHEL-10 Fv mutant LY50F complexed with hen egg white lysozyme
Deposited 2002-12-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.215
|
|
1J1P
Crystal structure of HyHEL-10 Fv mutant LS91A complexed with hen egg white lysozyme
Deposited 2002-12-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.212
|
|
1J1X
Crystal Structure of HyHEL-10 Fv mutant LS93A complexed with hen egg white lysozyme
Deposited 2002-12-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.217
|
|
1JA2
BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2001-05-29
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation;pH 4.8;296 K;rapid precipitation from 0.5M NACL IN PH 5.0 0.05M KHPHTHALATE/NAOH BUFFER, at 296K, pH 4.8
|
Resolution 2.87 Å
|
|
1JA4
BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2001-05-29
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation;pH 4.8;296 K;rapid precipitation from 0.5M NACL IN PH 5.0 0.05M KHPHTHALATE/NAOH BUFFER, at 296K, pH 4.8
|
Resolution 2.94 Å
|
|
1JA6
BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2001-05-29
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation;pH 5.2;296 K;rapid precipitation from 0.5M NACL IN PH 6.0 0.05M NA2HPO4/KH2PO4 BUFFER, at 296K, pH 5.2
|
Resolution 2.96 Å
|
|
1JA7
BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2001-05-29
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation;pH 5.1;296 K;rapid precipitation from 0.5M NACL IN PH 6.0 0.05M NA2HPO4/KH2PO4 BUFFER, at 296K, pH 5.1
|
Resolution 2.98 Å
|
|
1JIS
CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN AT PH 4.6
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.234
|
|
1JIT
CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE 30% TREHALOSE
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, 30% trehalose, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.225
|
|
1JIY
CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE 20% SORBITOL
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, 20% sorbitol, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.212
|
|
1JJ0
CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE of 30% SUCROSE
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, 30% sucrose, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.233
|
|
1JJ1
CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 4.6 IN PRESENCE OF 5% SORBITOL
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, 5% sorbitol, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.223
|
|
1JJ3
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.207
|
|
1JJ3
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2001-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.207
|
|
1JPO
LOW TEMPERATURE ORTHORHOMBIC LYSOZYME
Deposited 1997-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.10 Å
|
|
1JTO
Degenerate interfaces in antigen-antibody complexes
Deposited 2001-08-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
Fragment:Enzyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;300 K;PEG 8000, potassium phosphate, , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.50 Å
R-free 0.240
|
|
1JTO
Degenerate interfaces in antigen-antibody complexes
Deposited 2001-08-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
Fragment:Enzyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;300 K;PEG 8000, potassium phosphate, , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.50 Å
R-free 0.240
|
|
1JTT
Degenerate interfaces in antigen-antibody complexes
Deposited 2001-08-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–138(120 aa)
Fragment:Enzyme
|
Not recorded
|
NA SODIUM ION × 6
FMT FORMIC ACID × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;300 K;2M NaFormate, 100mM Na Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.10 Å
R-free 0.204
|
|
1JTT
Degenerate interfaces in antigen-antibody complexes
Deposited 2001-08-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–138(120 aa)
Fragment:Enzyme
|
Not recorded
|
NA SODIUM ION × 6
FMT FORMIC ACID × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;300 K;2M NaFormate, 100mM Na Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.10 Å
R-free 0.204
|
|
1KIP
FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Deposited 1996-10-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
FREE TEXT GOES HERE.
|
Resolution 2.10 Å
|
|
1KIQ
FV MUTANT Y(B 101)F (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Deposited 1996-10-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.85 Å
|
|
1KIR
FV MUTANT Y(A 50)S (VL DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Deposited 1996-10-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
1KXW
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-22
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:N27D
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.96 Å
|
|
1KXX
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-22
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:D18N, N27D
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.71 Å
|
|
1KXY
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-22
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:D18N
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.79 Å
|
|
1LCN
Monoclinic hen egg white lysozyme, thiocyanate complex
Deposited 1998-10-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
SCN THIOCYANATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;KSCN 190MM BUFFER CH3COOK 50MM, PH=5, pH 5.0
|
Resolution 1.63 Å
R-free 0.237
|
|
1LCN
Monoclinic hen egg white lysozyme, thiocyanate complex
Deposited 1998-10-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
SCN THIOCYANATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;KSCN 190MM BUFFER CH3COOK 50MM, PH=5, pH 5.0
|
Resolution 1.63 Å
R-free 0.237
|
|
1LJ3
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2002-04-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;298 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 298K
|
Resolution 2.00 Å
R-free 0.233
|
|
1LJ3
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2002-04-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;298 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 298K
|
Resolution 2.00 Å
R-free 0.233
|
|
1LJ4
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2002-04-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 1.95 Å
R-free 0.230
|
|
1LJ4
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6
Deposited 2002-04-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 1.95 Å
R-free 0.230
|
|
1LJE
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive, pH 4.6, LIQUID DIFFUSION at 298K, temperature 293K
|
Resolution 2.00 Å
R-free 0.212
|
|
1LJE
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive, pH 4.6, LIQUID DIFFUSION at 298K, temperature 293K
|
Resolution 2.00 Å
R-free 0.212
|
|
1LJF
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å
R-free 0.227
|
|
1LJF
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å
R-free 0.227
|
|
1LJG
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
glycerol(0.54M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.243
|
|
1LJG
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
glycerol(0.54M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å
R-free 0.243
|
|
1LJH
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant, glycerol(0.54M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å
R-free 0.226
|
|
1LJH
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant, glycerol(0.54M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å
R-free 0.226
|
|
1LJI
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE 10% SORBITOL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å
R-free 0.232
|
|
1LJI
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE 10% SORBITOL
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å
R-free 0.232
|
|
1LJJ
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% TREHALOSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) -
Precipitant, Trehalose(0.29M) - Additive; pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å
R-free 0.213
|
|
1LJJ
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% TREHALOSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) -
Precipitant, Trehalose(0.29M) - Additive; pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å
R-free 0.213
|
|
1LJK
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 15% TREHALOSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
Trehalose(0.44M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 2.10 Å
R-free 0.219
|
|
1LJK
CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 15% TREHALOSE
Deposited 2002-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;293 K;Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
Trehalose(0.44M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 2.10 Å
R-free 0.219
|
|
1LKR
MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE
Deposited 1998-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;1% PROTEIN, 200 MMOLAR ACETATE BUFFER, PH 8, 5% SODIUM IODIDE, pH 8.0
|
Resolution 1.60 Å
R-free 0.140
|
|
1LKR
MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE
Deposited 1998-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;1% PROTEIN, 200 MMOLAR ACETATE BUFFER, PH 8, 5% SODIUM IODIDE, pH 8.0
|
Resolution 1.60 Å
R-free 0.140
|
|
1LKS
HEN EGG WHITE LYSOZYME NITRATE
Deposited 1997-10-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
THE CRYSTALS WERE GROWN IN THE PRESENCE OF BROMO PHENYL BLUE (BPB), AND THE CRYSTALS WERE DARK BLUE, ALMOST BLACK. HOWEVER, NO RELIABLE TRACE OF THE BPB WAS FOUND.
|
Resolution 1.10 Å
|
|
1LMA
PROTEIN HYDRATION AND WATER STRUCTURE: X-RAY ANALYSIS OF A CLOSELY PACKED PROTEIN CRYSTAL WITH VERY LOW SOLVENT CONTENT
Deposited 1992-08-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.75 Å
|
|
1LPI
HEW LYSOZYME: TRP...NA CATION-PI INTERACTION
Deposited 1998-04-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;PROTEIN WAS CRYSTALLIZED FROM 2% NANO3, IN A 100 MM SODIUM ACETATE BUFFER, PH 4.6; THE PROTEIN STOCK SOLUTION CONTAINED 20 MG/ML
|
Resolution 2.00 Å
R-free 0.269
|
|
1LSA
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSB
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSC
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSD
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSE
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSF
THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER
Deposited 1994-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSG
THREE-DIMENSIONAL STRUCTURE OF THE PLATELET INTEGRIN RECOGNITION SEGMENT OF THE FIBRINOGEN GAMMA CHAIN OBTAINED BY CARRIER PROTEIN-DRIVEN CRYSTALLIZATION
Deposited 1994-10-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.40 Å
R-free 0.328
|
|
1LSM
THERMAL STABILITY DETERMINANTS OF CHICKEN EGG-WHITE LYSOZYME CORE MUTANTS: HYDROPHOBICITY, PACKING VOLUME AND CONSERVED BURIED WATER MOLECULES
Deposited 1994-09-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
|
|
1LSN
THERMAL STABILITY DETERMINANTS OF CHICKEN EGG-WHITE LYSOZYME CORE MUTANTS: HYDROPHOBICITY, PACKING VOLUME AND CONSERVED BURIED WATER MOLECULES
Deposited 1994-09-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
1LSY
CRYSTAL STRUCTURE OF THE MUTANT D52S HEN EGG WHITE LYSOZYME WITH AN OLIGOSACCHARIDE PRODUCT
Deposited 1994-09-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
1LSZ
CRYSTAL STRUCTURE OF THE MUTANT D52S HEN EGG WHITE LYSOZYME WITH AN OLIGOSACCHARIDE PRODUCT
Deposited 1994-09-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
1LYO
CROSS-LINKED LYSOZYME CRYSTAL IN NEAT WATER
Deposited 1998-03-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å
R-free 0.214
|
|
1LYS
X-RAY STRUCTURE OF A MONOCLINIC FORM OF HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT 313K. COMPARISON OF TWO INDEPENDENT MOLECULES
Deposited 1993-12-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.72 Å
|
|
1LYS
X-RAY STRUCTURE OF A MONOCLINIC FORM OF HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT 313K. COMPARISON OF TWO INDEPENDENT MOLECULES
Deposited 1993-12-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.72 Å
|
|
1LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
1LZ8
LYSOZYME PHASED ON ANOMALOUS SIGNAL OF SULFURS AND CHLORINES
Deposited 1999-03-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;BATCH METHOD. 20 MG/ML PROTEIN SOLUTION IN 50MM SODIUM ACETATE PH 4.6 AND 10%
NACL. CRYSTALS GROWN AT ROOM TEMPERATURE.
|
Resolution 1.53 Å
R-free 0.310
|
|
1LZ9
ANOMALOUS SIGNAL OF SOLVENT BROMINES USED FOR PHASING OF LYSOZYME
Deposited 1999-03-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;CRYSTALLIZED IN HANGING DROPS. 15 MG/ML PROTEIN SOLUTION IN 100 MM SODIUM
ACETATE PH 4.6 AND 1 M SODIUM BROMIDE.
|
Resolution 1.70 Å
R-free 0.290
|
|
1LZA
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.60 Å
|
|
1LZB
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.50 Å
|
|
1LZC
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1LZD
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1LZE
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1LZG
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Deposited 1995-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1LZH
THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.
Deposited 1981-06-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 6.00 Å
|
|
1LZH
THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.
Deposited 1981-06-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 6.00 Å
|
|
1LZN
NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME
Deposited 1999-03-23
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 5
NA SODIUM ION × 1
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
pH 4.7;BATCH TECHNIQUE EQUAL AMOUNT OF 1.0 % SOLUTION OF HEN EGG-WHITE LYSOZYME (
BOEHRINGER) AND 2.8 % NANO3 IN 50 MM ACETATE BUFFER (PH 4.7)
|
Resolution 1.70 Å
R-free 0.221
|
|
1LZT
REFINEMENT OF TRICLINIC LYSOZYME
Deposited 1985-04-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.97 Å
|
|
1MEL
CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME
Deposited 1996-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;HANGING DROP, pH 6.4, vapor diffusion - hanging drop
|
Resolution 2.50 Å
R-free 0.323
|
|
1MEL
CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME
Deposited 1996-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;HANGING DROP, pH 6.4, vapor diffusion - hanging drop
|
Resolution 2.50 Å
R-free 0.323
|
|
1MLC
MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME COMPLEXED WITH LYSOZYME
Deposited 1995-03-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
R-free 0.282
|
|
1MLC
MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME COMPLEXED WITH LYSOZYME
Deposited 1995-03-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
R-free 0.282
|
|
1N4F
Para-Arsanilate Derivative of Hen Egg-White Lysozyme
Deposited 2002-10-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ASR 4-AMINOPHENYLARSONIC ACID × 3
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;291 K;250 mM sodium para-arsanilate then transferred to equivalent solution plus 15% V/V ethyleneglycol, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.78 Å
R-free 0.213
|
|
1NBY
Crystal Structure of HyHEL-63 complexed with HEL mutant K96A
Deposited 2002-12-04
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:K96A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;PEG 4000, AMMONIUM ACETATE, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.80 Å
R-free 0.250
|
|
1NBZ
Crystal Structure of HyHEL-63 complexed with HEL mutant K97A
Deposited 2002-12-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;PEG 4000, AMMONIUM ACETATE, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.85 Å
R-free 0.229
|
|
1NDG
Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Deposited 2002-12-09
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:R61A
|
ACY ACETIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.249
|
|
1NDM
Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Deposited 2002-12-09
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:R61A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.10 Å
R-free 0.258
|
|
1P2C
crystal structure analysis of an anti-lysozyme antibody
Deposited 2003-04-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.6;298 K;PEG 1000, CaCl2, pH 4.6, vapor diffusion, temperature 298.K
|
Resolution 2.00 Å
R-free 0.242
|
|
1P2C
crystal structure analysis of an anti-lysozyme antibody
Deposited 2003-04-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.6;298 K;PEG 1000, CaCl2, pH 4.6, vapor diffusion, temperature 298.K
|
Resolution 2.00 Å
R-free 0.242
|
|
1PS5
STRUCTURE OF THE MONOCLINIC C2 FORM OF HEN EGG-WHITE LYSOZYME AT 2.0 ANGSTROMS RESOLUTION
Deposited 2003-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;313 K;2 M Lithium Sulfate, 8% MPD , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 313K
|
Resolution 2.00 Å
R-free 0.250
|
|
1QIO
SPECIFIC CHEMICAL AND STRUCTURAL DAMAGE CAUSED BY INTENSE SYNCHROTRON RADIATION TO HEN EGG WHITE LYSOZYME
Deposited 1999-06-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;CRYSTALLIZED FROM 2-6% NACL, 0.2 M SODIUM ACETATE PH 4.7.
|
Resolution 1.20 Å
R-free 0.188
|
|
1QTK
CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF KRYPTON (55 BAR)
Deposited 1999-06-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
KR KRYPTON × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;290 K;Sodium chloride , pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 290.0K
|
Resolution 2.03 Å
R-free 0.216
|
|
1RCM
CRYSTAL STRUCTURE OF A UBIQUITIN-DEPENDENT DEGRADATION SUBSTRATE: A THREE-DISULFIDE FORM OF LYSOZYME
Deposited 1993-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACY ACETIC ACID × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
1RCM
CRYSTAL STRUCTURE OF A UBIQUITIN-DEPENDENT DEGRADATION SUBSTRATE: A THREE-DISULFIDE FORM OF LYSOZYME
Deposited 1993-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
ACY ACETIC ACID × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
1RFP
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.75 Å
|
|
1RI8
Crystal Structure of the Camelid Single Domain Antibody 1D2L19 in complex with Hen Egg White Lysozyme
Deposited 2003-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;PEG 4000, lithium sulphate, Tris-HCl, glycerol, sodium chloride, potassium phosphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.85 Å
R-free 0.196
|
|
1RJC
Crystal structure of the camelid single domain antibody cAb-Lys2 in complex with hen egg white lysozyme
Deposited 2003-11-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;298 K;PEG 8000, glycerol, ammonium sulphate, potassium phosphate, sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å
R-free 0.235
|
|
1SF4
BINDING OF N,N'-DIACETYLCHITOBIOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation;pH 6;298 K;NaCl, Na2HPO4, KH2PO4, N.N'-diacetylchitobiose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 2.98 Å
|
|
1SF6
BINDING OF N,N',N"-TRIACETYLCHITOTRIOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 3.22 Å
|
|
1SF7
BINDING OF TETRA-N-ACETYLCHITOTETRAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation;pH 6;298 K;NaCl, Na2HPO4, KH2PO4, tetra-N-acetylchitotetraose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å
|
|
1SFB
BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation;pH 6;298 K;NaCl, Na2HPO4, KH2PO4, penta-N-acetylchitopentaose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å
|
|
1SFG
BINDING OF HEXA-N-ACETYLCHITOHEXAOSE: A POWDER DIFFRACTION STUDY
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation;pH 6;298 K;NaCl, Na2HPO4, KH2PO4, hexa-N-acetylchitohexaose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å
|
|
1SQ2
Crystal Structure Analysis of the Nurse Shark New Antigen Receptor (NAR) Variable Domain in Complex With Lysozyme
Deposited 2004-03-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;295 K;15% PEG 10,000, 0.1M imidazole HCl, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295.0K
|
Resolution 1.45 Å
R-free 0.225
|
|
1T3P
Half-sandwich arene ruthenium(II)-enzyme complex
Deposited 2004-04-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;NaCl, Na acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å
R-free 0.217
|
|
1T6V
Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme
Deposited 2004-05-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;295 K;15% PEG 10,000, 0.1M imidazole malate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.70 Å
R-free 0.221
|
|
1T6V
Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme
Deposited 2004-05-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;295 K;15% PEG 10,000, 0.1M imidazole malate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.70 Å
R-free 0.221
|
|
1UA6
Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex
Deposited 2003-02-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;PEG 8000, ETHYLENE GLYCOL, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.90 Å
R-free 0.265
|
|
1UC0
Crystal structure of wild-type hen-egg white lysozyme singly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine
Deposited 2003-04-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;298 K;sodium acetate, sodium chloride, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 1.85 Å
R-free 0.254
|
|
1UCO
HEN EGG-WHITE LYSOZYME, LOW HUMIDITY FORM
Deposited 1995-12-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
1UCO
HEN EGG-WHITE LYSOZYME, LOW HUMIDITY FORM
Deposited 1995-12-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
1UIA
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:DEL(14,15)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.76 Å
|
|
1UIB
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:DEL(14,15)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.76 Å
|
|
1UIC
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:H15A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å
|
|
1UID
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:H15F
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 1.8 M NACL
|
Resolution 1.95 Å
|
|
1UIE
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:H15G
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å
|
|
1UIF
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:H15V
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.85 Å
|
|
1UIG
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å
|
|
1UIH
ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS
Deposited 1996-11-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.75 Å
|
|
1UUZ
IVY:A NEW FAMILY OF PROTEIN
Deposited 2004-01-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;20% POLYETHYLENEGLYCOL 4000, IMIDAZOLE/MALATE 0.2M PH 6.0, 5% GLYCEROL
|
Resolution 1.80 Å
R-free 0.250
|
|
1UUZ
IVY:A NEW FAMILY OF PROTEIN
Deposited 2004-01-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;20% POLYETHYLENEGLYCOL 4000, IMIDAZOLE/MALATE 0.2M PH 6.0, 5% GLYCEROL
|
Resolution 1.80 Å
R-free 0.250
|
|
1V7S
Triclinic hen lysozyme crystallized at 313K from a D2O solution
Deposited 2003-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION, RECRYSTALLIZATION;pH 4.5;313 K;sodium nitrate, sodium acetate, pH 4.5, EVAPORATION, RECRYSTALLIZATION, temperature 313K
|
Resolution 1.14 Å
R-free 0.120
|
|
1V7T
Triclinic lysozyme with low solvent content obtained by phase transition
Deposited 2003-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;313 K;sodium nitrate, sodium acetate, pH 4.5, phase transition, temperature 313K
|
Resolution 1.13 Å
R-free 0.162
|
|
1V7T
Triclinic lysozyme with low solvent content obtained by phase transition
Deposited 2003-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;313 K;sodium nitrate, sodium acetate, pH 4.5, phase transition, temperature 313K
|
Resolution 1.13 Å
R-free 0.162
|
|
1VAT
Iodine derivative of hen egg-white lysozyme
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;50mg/ml HEWL, 20%(w/v) PEG4000, 100mM sodium citrate (pH 5.5), 100mM sodium iodide, and 20%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.60 Å
R-free 0.232
|
|
1VAU
Xenon derivative of hen egg-white lysozyme
Deposited 2004-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
XE XENON × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;50mg/ml HEWL, 1.8M NaCl, 100mM sodium citrate (pH 4.5), 30%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.203
|
|
1VDP
The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
Deposited 2004-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
R-free 0.221
|
|
1VDP
The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space
Deposited 2004-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
R-free 0.221
|
|
1VDQ
The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution
Deposited 2004-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;batch method
|
Resolution 1.50 Å
R-free 0.202
|
|
1VDS
The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space
Deposited 2004-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.60 Å
R-free 0.219
|
|
1VDT
The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space
Deposited 2004-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
R-free 0.201
|
|
1VED
The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space
Deposited 2004-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.220
|
|
1VFB
BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Deposited 1993-12-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
|
|
1W6Z
High Energy Tetragonal Lysozyme X-ray Structure
Deposited 2004-08-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
HO3 HOLMIUM (III) ATOM × 3
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;HANGING DROP METHOD, 0.3M HOCL3, 0.9M NACL, 0.05M SODIUM ACETATE PH4.5, pH 4.50
|
Resolution 1.65 Å
R-free 0.226
|
|
1WTM
X-ray structure of HEW Lysozyme Orthorhombic Crystal formed in the Earth's magnetic field
Deposited 2004-11-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
in the Earth's magnetic field;pH 4.5;313 K;NaCl, sodium acetate, pH 4.5, in the Earth's magnetic field, temperature 313K
|
Resolution 1.33 Å
R-free 0.201
|
|
1WTN
The structure of HEW Lysozyme Orthorhombic Crystal Growth under a High Magnetic Field
Deposited 2004-11-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
under a High Magnetic Field of 10T;pH 4.5;313 K;NaCl, sodium acetate, pH 4.5, under a High Magnetic Field of 10T, temperature 313K
|
Resolution 1.13 Å
R-free 0.200
|
|
1XEI
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
Deposited 1998-01-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;pH 4.6
|
Resolution 2.10 Å
R-free 0.265
|
|
1XEJ
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
Deposited 1998-01-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;pH 4.6
|
Resolution 2.10 Å
R-free 0.283
|
|
1XEK
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
Deposited 1998-01-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;pH 4.6
|
Resolution 2.30 Å
R-free 0.304
|
|
1XFP
Crystal structure of the CDR2 germline reversion mutant of cAb-Lys3 in complex with hen egg white lysozyme
Deposited 2004-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
FMT FORMIC ACID × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;Sodium Formate, sodium-HEPES, sodium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.216
|
|
1XGP
Structure for antibody HyHEL-63 Y33A mutant complexed with hen egg lysozyme
Deposited 2004-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.10 Å
R-free 0.271
|
|
1XGQ
Structure for antibody HyHEL-63 Y33V mutant complexed with hen egg lysozyme
Deposited 2004-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.10 Å
R-free 0.277
|
|
1YIK
Structure of Hen egg white lysozyme soaked with Cu-cyclam
Deposited 2005-01-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 3
MM1 1,4,8,11-TETRAAZA-CYCLOTETRADECANE CU(II) × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;277 K;Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K
|
Resolution 1.75 Å
R-free 0.233
|
|
1YIL
Structure of Hen egg white lysozyme soaked with Cu2-Xylylbicyclam
Deposited 2005-01-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
MM2 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZA-CYCLOTETRADECANE]CU(II)2 × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;277 K;Acetate buffer, NaCl , pH 4.5, VAPOR DIFFUSION, temperature 277K
|
Resolution 1.60 Å
R-free 0.223
|
|
1YKX
Effect of alcohols on protein hydration
Deposited 2005-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
EOH ETHANOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium chloride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.207
|
|
1YKY
Effect of alcohols on protein hydration
Deposited 2005-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
1BO 1-BUTANOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium chloride and sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.222
|
|
1YKZ
Effect of alcohols on protein hydration
Deposited 2005-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
PTL PENTANAL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium choride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.225
|
|
1YL0
Effect of alcohols on protein hydration
Deposited 2005-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
IPA ISOPROPYL ALCOHOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium chloride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.233
|
|
1YL1
Effect of alcohols on protein hydration
Deposited 2005-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ETF TRIFLUOROETHANOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium chloride, sodium acetate bufferbuffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.251
|
|
1YQV
The crystal structure of the antibody Fab HyHEL5 complex with lysozyme at 1.7A resolution
Deposited 2005-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
R-free 0.234
|
|
1Z55
Effect of alcohols on protein hydration
Deposited 2005-03-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;sodium chloride, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 1.90 Å
R-free 0.256
|
|
1ZMY
cAbBCII-10 VHH framework with CDR loops of cAbLys3 grafted on it and in complex with hen egg white lysozyme
Deposited 2005-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å
R-free 0.254
|
|
1ZMY
cAbBCII-10 VHH framework with CDR loops of cAbLys3 grafted on it and in complex with hen egg white lysozyme
Deposited 2005-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain M
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å
R-free 0.254
|
|
1ZV5
Crystal structure of the variable domain of the camelid heavy-chain antibody D2-L29 in complex with hen egg white lysozyme
Deposited 2005-06-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;Ammonium sulphate, PEG 400, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.239
|
|
1ZVH
Crystal structure of the VHH domain D2-L24 in complex with hen egg white lysozyme
Deposited 2005-06-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;Ammonium Sulphate, PEG 8000, glycerol, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.234
|
|
1ZVY
Crystal structure of the VHH D3-L11 in complex with hen egg white lysozyme
Deposited 2005-06-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;magnesium acetate, sodium cacodylate, PEG 8000, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.63 Å
R-free 0.229
|
|
23SI
Hen Egg-White Lysozyme (HEWL) complexed with Trans-Ferulic Acid
Deposited 2026-02-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
FER 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.50 Å
R-free 0.225
|
|
2A6U
pH evolution of tetragonal HEWL at 4 degrees Celcius.
Deposited 2005-07-04
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
2A7D
On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength
Deposited 2005-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
XE XENON × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.66 Å
R-free 0.202
|
|
2A7F
On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength
Deposited 2005-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.85 Å
R-free 0.232
|
|
2AUB
Lysozyme structure derived from thin-film-based crystals
Deposited 2005-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.70 Å
R-free 0.283
|
|
2B5Z
Hen lysozyme chemically glycosylated
Deposited 2005-09-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BGS (1S)-1,5-anhydro-1-(ethylsulfonyl)-D-glucitol × 4
AZI AZIDE ION × 3
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.9;293 K;Magnesium Sulfate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å
R-free 0.225
|
|
2BLX
HEWL before a high dose x-ray "burn"
Deposited 2005-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PG4 TETRAETHYLENE GLYCOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
30 % PEG 5000 MME,1 M SODIUM CHLORIDE, 50 MM PH 4.5 SODIUM ACETATE
|
Resolution 1.40 Å
R-free 0.169
|
|
2BLY
HEWL after a high dose x-ray "burn"
Deposited 2005-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PG4 TETRAETHYLENE GLYCOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
30 % PEG 5000 MME, 1 M SODIUM CHLORIDE,5 0 MM PH 4.5 SODIUM ACETATE
|
Resolution 1.40 Å
R-free 0.170
|
|
2BPU
The Kedge Holmium Derivative of Hen Egg-White Lysozyme at high resolution from Single Wavelength Anomalous Diffraction
Deposited 2005-04-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
HO HOLMIUM ATOM × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;pH 4.50
|
Resolution 1.35 Å
R-free 0.207
|
|
2C8O
lysozyme (1sec) and UV lasr excited fluorescence
Deposited 2005-12-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;pH 4.50
|
Resolution 1.50 Å
R-free 0.208
|
|
2C8P
lysozyme (60sec) and UV laser excited fluorescence
Deposited 2005-12-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;pH 4.50
|
Resolution 1.50 Å
R-free 0.200
|
|
2CDS
LYSOZYME
Deposited 1999-03-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;pH 7
|
Resolution 2.00 Å
R-free 0.224
|
|
2CGI
Siras structure of tetragonal lysozyme using derivative data collected at the high energy remote Holmium Kedge
Deposited 2006-03-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;pH 4.50
|
Resolution 1.35 Å
R-free 0.196
|
|
2D4I
Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution
Deposited 2005-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 4.5;298 K;1% protein, 2% sodium nitrate, D2O solution with pD 4.5 adjusted with 1M acetic acid, batch method, temperature 298K
|
Resolution 1.16 Å
R-free 0.175
|
|
2D4I
Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution
Deposited 2005-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 4.5;298 K;1% protein, 2% sodium nitrate, D2O solution with pD 4.5 adjusted with 1M acetic acid, batch method, temperature 298K
|
Resolution 1.16 Å
R-free 0.175
|
|
2D4J
Transformed monoclinic crystal of hen egg-white lysozyme from a heavy water solution
Deposited 2005-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
phase transition;pH 4.5;293 K;The crystal was created by the dehydration-induced phase transition of a monoclinic crystal obtained from a heavy water solution at pD 4.5, temperature 293K
|
Resolution 1.16 Å
R-free 0.133
|
|
2D4K
Monoclinic hen egg-white lysozyme crystallized at 313K
Deposited 2005-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 7.6;313 K;2% protein, 10% sodium chloride, 5% 1-propanol, pH 7.6, batch method, temperature 313K
|
Resolution 1.15 Å
R-free 0.164
|
|
2D4K
Monoclinic hen egg-white lysozyme crystallized at 313K
Deposited 2005-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain N
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 7.6;313 K;2% protein, 10% sodium chloride, 5% 1-propanol, pH 7.6, batch method, temperature 313K
|
Resolution 1.15 Å
R-free 0.164
|
|
2D6B
Novel Bromate Species trapped within a Protein Crystal
Deposited 2005-11-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lysozyme
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
202 BROMIC ACID × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.8;273 K;pH 4.8, VAPOR DIFFUSION, temperature 273K
|
Resolution 1.25 Å
R-free 0.213
|
|
2D91
Structure of HYPER-VIL-lysozyme
Deposited 2005-12-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.3;293 K;2.0M NaCl, 0.1M Na acetate, 30% (v/v) glycerol, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.290
|
|
2DQC
Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.223
|
|
2DQD
Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.215
|
|
2DQE
Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.224
|
|
2DQF
Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;AMMONIUM SULFATE, PEG4000, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å
R-free 0.268
|
|
2DQF
Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;AMMONIUM SULFATE, PEG4000, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å
R-free 0.268
|
|
2DQG
Crystal structure of hyhel-10 FV mutant (Hy53f) complexed with hen egg lysozyme
Deposited 2006-05-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.254
|
|
2DQH
Crystal structure of hyhel-10 FV mutant (Hy58a) complexed with hen egg lysozyme
Deposited 2006-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.264
|
|
2DQI
Crystal structure of hyhel-10 FV mutant (Ly50a) complexed with hen egg lysozyme
Deposited 2006-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.257
|
|
2DQJ
Crystal structure of hyhel-10 FV (wild-type) complexed with hen egg lysozyme at 1.8A resolution
Deposited 2006-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;HEPES, MPD, PEG6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.219
|
|
2EIZ
Crystal structure of humanized HYHEL-10 fv mutant(HW47Y)-hen lysozyme complex
Deposited 2007-03-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;293 K;28-31% PEGMME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.90 Å
R-free 0.253
|
|
2EKS
Crystal structure of humanized HyHEL-10 FV-HEN lysozyme complex
Deposited 2007-03-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;293 K;28-31% PEGMME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.00 Å
R-free 0.265
|
|
2EPE
Crystal structure analysis of Hen egg white lysozyme grown by capillary method
Deposited 2007-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
capillary method;pH 4.7;298 K;0.04m NAOAC/HOAC buffer, pH 4.7, capillary method, temperature 298.0K
|
Resolution 2.50 Å
R-free 0.211
|
|
2F2N
Triclinic hen egg lysozyme cross-linked by glutaraldehyde
Deposited 2005-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;300 K;sodium nitrate, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.60 Å
R-free 0.169
|
|
2F30
Triclinic cross-linked Lysozyme soaked with 4.5M urea
Deposited 2005-11-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
URE UREA × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;300 K;sodium nitrate as crystallizing agent
cross-linked by vapor diffusion with glutaraldehyde, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.65 Å
R-free 0.191
|
|
2F4A
Triclinic cross-linked lysozyme soaked with thiourea 1.5M
Deposited 2005-11-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
ACT ACETATE ION × 1
TOU THIOUREA × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;300 K;SODIUM NITRATE AS CRYSTALLIZING AGENT CROSS-LINKED BY VAPOR DIFFUSION WITH GLUTARALDEHYDE,
PROTIEN CONCENTRATION 20 MG/ML, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.95 Å
R-free 0.161
|
|
2F4G
Triclinic cross-linked lysozyme soaked in bromoethanol 1M
Deposited 2005-11-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
BRJ 2-BROMOETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;300 K;SODIUM NITRATE AS CRYSTALLIZING AGENT CROSS-LINKED BY VAPOR DIFFUSION WITH GLUTARALDEHYDE, PROTEIN 20 MG/ML, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.65 Å
R-free 0.180
|
|
2FBB
Crystal Structure Analysis of Hexagonal Lysozyme
Deposited 2005-12-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 5
NO3 NITRATE ION × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.4;293 K;10% aqu. acetone solution saturated with sodium nitrate, 25mg/ml lysozyme, pH 8.4, batch, temperature 293.0K, pH 8.40
|
Resolution 1.46 Å
R-free 0.198
|
|
2G4P
Anomalous substructure of lysozyme at pH 4.5
Deposited 2006-02-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.84 Å
R-free 0.214
|
|
2G4Q
Anomalous substructure of lysozyme at pH 8.0
Deposited 2006-02-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.84 Å
R-free 0.206
|
|
2H9J
Structure of Hen egg white lysozyme soaked with Ni2-Xylylbicyclam
Deposited 2006-06-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:Residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NI NICKEL (II) ION × 1
MM5 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZACYCLOTETRADECANE]NI(II) × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;277 K;Acetate buffer, NaCl , pH 4.5, VAPOR DIFFUSION, temperature 277K, temperature 277.0K
|
Resolution 1.75 Å
R-free 0.232
|
|
2H9K
Structure of Hen egg white lysozyme soaked with Ni-cyclam
Deposited 2006-06-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:Residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
MM6 NICKEL(II)(1,4,8,11-TETRAAZACYCLOTETRADECANE) × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 1.75 Å
R-free 0.246
|
|
2HS7
Multipattern rietveld refinement with protein powder data: An approach to higher resolution
Deposited 2006-07-21
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
BATCH CRYSTALLIZATION;pH 4;296 K;Rapid precipitation for 5 samples from 1.25, 1.00, 0.75, 0.50 and 0.25M NACL, in KHPHTHALATE BUFFER, pH 4.0, BATCH CRYSTALLIZATION, temperature 296K
|
Resolution 1.98 Å
|
|
2HS9
Multipattern Rietveld refinement with protein powder data: An approach to higher resolution
Deposited 2006-07-21
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
BATCH CRYSTALLIZATION;pH 5;298 K;Rapid precipitation for 4 samples from 1.25, 1.0, 0.75 AND 0.25M NaCl in 0.05M KHPHTHALATE BUFFER, pH 5.0, BATCH CRYSTALLIZATION, temperature 298K
|
Resolution 1.98 Å
|
|
2HSO
Multipattern rietveld refinement with protein powder data: An approach to higher resolution
Deposited 2006-07-22
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
POWDER DIFFRACTION
X-ray crystallization conditions
batch crystallization;pH 4;298 K;Rapid precipitation from 1.25M NaCl in 0.05M KHPHTHALATE BUFFER, pH 4, batch crystallization, temperature 298K
|
Resolution 1.98 Å
|
|
2HTX
Crystal Structure Analysis of Hen Egg White Lysozyme Crosslinked by Polymerized Glutaraldehyde in Acidic Environment
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 1
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;291 K;0.1M Sodium Acetate, 7% NaCl, 25% Ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.56 Å
R-free 0.182
|
|
2HU1
Crystal structure Analysis of Hen Egg White Lyszoyme
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 8
CL CHLORIDE ION × 4
220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 1
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;291 K;0.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.63 Å
R-free 0.220
|
|
2HU1
Crystal structure Analysis of Hen Egg White Lyszoyme
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 16
CL CHLORIDE ION × 8
220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 2
EDO 1,2-ETHANEDIOL × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;291 K;0.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.63 Å
R-free 0.220
|
|
2HU3
Parent Structure of Hen Egg White Lysozyme grown in acidic pH 4.8. Refinement for comparison with crosslinked molecules of lysozyme
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 12
NA SODIUM ION × 5
NH4 AMMONIUM ION × 2
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;0.1M Na Acetate, pH 4.8, 7% NaCl, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å
R-free 0.145
|
|
2HU3
Parent Structure of Hen Egg White Lysozyme grown in acidic pH 4.8. Refinement for comparison with crosslinked molecules of lysozyme
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 24
NA SODIUM ION × 10
NH4 AMMONIUM ION × 4
EDO 1,2-ETHANEDIOL × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;0.1M Na Acetate, pH 4.8, 7% NaCl, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å
R-free 0.145
|
|
2HUB
Structure of Hen Egg-White Lysozyme Determined from crystals grown in pH 7.5
Deposited 2006-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
PPI PROPANOIC ACID × 1
TAR D(-)-TARTARIC ACID × 1
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Microbatch, Douglas Instrument robot;pH 7.5;293 K;0.1 M HEPES-Na pH 7.5, 0.8M Potassium Sodium Tartrate tetrahydrate, Microbatch, Douglas Instrument robot, temperature 293K
|
Resolution 1.20 Å
R-free 0.173
|
|
2I25
Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.3;295 K;38% PEG 400, 0.1M Tris, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.80 Å
R-free 0.211
|
|
2I25
Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.3;295 K;38% PEG 400, 0.1M Tris, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.80 Å
R-free 0.211
|
|
2I26
Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.8;295 K;11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å
R-free 0.291
|
|
2I26
Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.8;295 K;11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å
R-free 0.291
|
|
2I26
Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme
Deposited 2006-08-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Q
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.8;295 K;11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å
R-free 0.291
|
|
2I6Z
X-ray diffraction studies of adducts between anticancer platinum drugs and hen egg white lysozyme
Deposited 2006-08-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:Residues 19-147
|
Not recorded
|
CPT Cisplatin × 1
CL CHLORIDE ION × 1
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;5 mM sodium acetate buffer, pH 6.5 and 0.05 M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.90 Å
R-free 0.243
|
|
2IFF
STRUCTURE OF AN ANTIBODY-LYSOZYME COMPLEX: EFFECT OF A CONSERVATIVE MUTATION
Deposited 1994-02-03
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Mutation:R68K
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.65 Å
|
|
2LYM
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME AT A HYDROSTATIC PRESSURE OF 1000 ATMOSPHERES
Deposited 1987-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
2LYO
CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 90% ACETONITRILE-WATER
Deposited 1998-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CCN ACETONITRILE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å
R-free 0.203
|
|
2LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
2LZH
THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.
Deposited 1981-06-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 6.00 Å
|
|
2LZT
REFINEMENT OF TRICLINIC LYSOZYME. II. THE METHOD OF STEREOCHEMICALLY RESTRAINED LEAST-SQUARES
Deposited 1989-08-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 5
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.97 Å
|
|
2PC2
Lysozyme Cocrystallized with Tris-dipicolinate Eu complex
Deposited 2007-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EU EUROPIUM ION × 5
CL CHLORIDE ION × 1
PDC PYRIDINE-2,6-DICARBOXYLIC ACID × 13
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.1;293 K;0.3M NaCl, 0.1M MES, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.54 Å
R-free 0.167
|
|
2Q0M
Tricarbonylmanganese(I)-lysozyme complex : a structurally characterized organometallic protein
Deposited 2007-05-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
MN MANGANESE (II) ION × 1
CMO CARBON MONOXIDE × 3
TFS trifluoromethanesulfonic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;0.9 M NaCl, 50 mM sodium acetate, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.249
|
|
2VB1
HEWL at 0.65 angstrom resolution
Deposited 2007-09-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 3
NO3 NITRATE ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;SITTING DROP METHOD. PROTEIN SOLUTION: 35 MG/ML HEWL, 0.02 M NA ACETATE BUFFER PH 4.7 WELL SOLUTION: 1 M NANO3, 0.1 M NA ACETATE BUFFER PH 4.7, 20 % ETHYLENE GLYCOL PROTEIN AND WELL SOLUTIONS MIXED 1:1 IN A DROP AND SEEDED
|
Resolution 0.65 Å
R-free 0.095
|
|
2W1L
THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 0.979 a wavelength 991 images data
Deposited 2008-10-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2;PLEASE SEE REFERENCE., pH 4.2
|
Resolution 1.51 Å
R-free 0.210
|
|
2W1M
THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 2.070 A WAVELENGTH with 2theta 30 degrees data
Deposited 2008-10-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2;PLEASE SEE REFERENCE PAPER., pH 4.2
|
Resolution 1.78 Å
R-free 0.238
|
|
2W1X
The interdependence of wavelength, redundancy and dose in sulfur SAD experiments: 1.284 A wavelength 360 images data
Deposited 2008-10-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2;PLEASE REFER TO RESEARCH PAPER, pH 4.2
|
Resolution 1.70 Å
R-free 0.228
|
|
2W1Y
THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 1.540 A wavelength 180 images data
Deposited 2008-10-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2;PLEASE REFER TO RESEARCH PAPER, pH 4.2
|
Resolution 1.73 Å
R-free 0.214
|
|
2WAR
Hen Egg White Lysozyme E35Q chitopentaose complex
Deposited 2009-02-13
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:YES
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;PROTEIN AT 7MG ML-1 IN 10MM CHITOPENTAOSE 200MM NA ACETATE PH5 WAS MIXED WITH RESERVOIR OF 200MM NA ACETATE, 4% W/V NACL PH4.5
|
Resolution 1.80 Å
R-free 0.196
|
|
2X0A
MPD-Lysozyme structure at 55.5 keV using a TRIXXEL CsI-aSi based digital imager and the new ESRF U22 undulator source at ID15
Deposited 2009-12-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;295 K;HANGING DROP METHOD AT 295K. DROP IS 1 MICROL OF 50 MG/ML PROTEIN AND 1 MICROL OF WELL SOLUTION. WELL VOLUME IS 1ML OF 70 % MPD FROM HAMPTON RESEARCH.
|
Resolution 1.52 Å
R-free 0.199
|
|
2XBR
Raman crystallography of Hen White Egg Lysozyme - Low X-ray dose (0.2 MGy)
Deposited 2010-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;75 MM SODIUM ACETATE PH 4.6, 1.0 M SODIUM CHLORIDE
|
Resolution 1.29 Å
R-free 0.186
|
|
2XBS
Raman crystallography of Hen White Egg Lysozyme - High X-ray dose (16 MGy)
Deposited 2010-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;75 MM SODIUM ACETATE PH 4.6, 1.0 M SODIUM CHLORIDE
|
Resolution 1.37 Å
R-free 0.193
|
|
2XJW
Lysozyme-CO releasing molecule adduct
Deposited 2010-07-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RU RUTHENIUM ION × 3
NA SODIUM ION × 1
CMO CARBON MONOXIDE × 6
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;2-10% (M/V) NACL, 0.1 M ACETATE BUFFER PH 4.5. HANGING AND SITTING DROPS
|
Resolution 1.67 Å
R-free 0.208
|
|
2XTH
K2PtBr6 binding to lysozyme
Deposited 2010-10-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
6BP HEXABROMOPLATINATE(IV) × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;10% SODIUM CHLORIDE W/V; PH 4.7 0.04M SODIUM ACETATE BUFFER; 80MG OF LYSOZYME PROTEIN 2ML AQUEOUS.
|
Resolution 1.80 Å
R-free 0.249
|
|
2YBH
Nitrate X-ray induced reduction on HEWL crystals (2.31 MGy).
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å
R-free 0.236
|
|
2YBI
Nitrate X-ray induced reduction on HEWL crystals (6.62 MGy)
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
NO2 NITRITE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å
R-free 0.233
|
|
2YBJ
Nitrate X-ray induced reduction on HEWL crystals (12.31 MGy)
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO2 NITRITE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å
R-free 0.215
|
|
2YBL
Nitrate X-ray induced reduction on HEWL crystals (17.9 MGy)
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO2 NITRITE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å
R-free 0.253
|
|
2YBM
Nitrate X-ray induced reduction on HEWL crystals (23.3 MGy)
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO NITRIC OXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL
|
Resolution 2.00 Å
R-free 0.242
|
|
2YBN
Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy)
Deposited 2011-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO2 NITRITE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å
R-free 0.250
|
|
2YDG
Ascorbate co-crystallized HEWL.
Deposited 2011-03-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ASC ASCORBIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;200 MM SODIUM ACETATE BUFFER AT PH 4.7 CONTAINING 10 % W/V NACL.
|
Resolution 2.00 Å
R-free 0.186
|
|
2YSS
Crystal structure of Humanized HYHEL-10 FV mutant(HQ39KW47Y)-HEN lysozyme complex
Deposited 2007-04-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;293 K;28-31% PEG MME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.40 Å
R-free 0.265
|
|
2YVB
High resolution X-ray crystal structure of Tetragonal Hen egg white lysozyme
Deposited 2007-04-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;293 K;0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.62 Å
R-free 0.277
|
|
2Z12
Structure of the transformed monoclinic lysozyme by controlled dehydration
Deposited 2007-05-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration induced phase transition;293 K;temperature-regulated nitragen gas, Dehydration induced phase transition, temperature 293K
|
Resolution 1.15 Å
R-free 0.205
|
|
2Z18
Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution
Deposited 2007-05-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
HDZ NITROGEN MOLECULE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration induced phase transition;293 K;10% NaCl, temperature-regulated nitrogen gas, Dehydration induced phase transition, temperature 293K
|
Resolution 1.15 Å
R-free 0.176
|
|
2Z19
Phase transition of monoclinic lysozyme crystal soaked in a saturated NaCl solution
Deposited 2007-05-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration-induced phase transition;pH 7.6;293 K;NaCl, nitrogen-gas, pH 7.6, Dehydration-induced phase transition, temperature 293K
|
Resolution 1.15 Å
R-free 0.203
|
|
2ZNW
Crystal Structure of ScFv10 in Complex with Hen Egg Lysozyme
Deposited 2008-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;30% PEG 400, 0.2M Na Citrate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.71 Å
R-free 0.250
|
|
2ZNW
Crystal Structure of ScFv10 in Complex with Hen Egg Lysozyme
Deposited 2008-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Z
19–147(129 aa)
|
Not recorded
|
1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;30% PEG 400, 0.2M Na Citrate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.71 Å
R-free 0.250
|
|
2ZNX
5-Fluorotryptophan Incorporated ScFv10 Complexed to Hen Egg Lysozyme
Deposited 2008-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;30% PEG400, 0.2M Na Citrate; 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.232
|
|
2ZNX
5-Fluorotryptophan Incorporated ScFv10 Complexed to Hen Egg Lysozyme
Deposited 2008-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Z
19–147(129 aa)
|
Not recorded
|
1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;30% PEG400, 0.2M Na Citrate; 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.232
|
|
2ZQ3
The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.6 angstroms resolution
Deposited 2008-08-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
277 K;277K
|
Resolution 1.60 Å
R-free 0.207
|
|
2ZQ4
The crystal structure of the orthorhombic form of hen egg white lysozyme at 2.0 angstroms resolution
Deposited 2008-08-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
310 K;310K
|
Resolution 2.00 Å
R-free 0.222
|
|
2ZYP
X-ray structure of hen egg-white lysozyme with poly(allyl amine)
Deposited 2009-01-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
AYE prop-2-en-1-amine × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1% PAA, 1.0M sodium chloride, 0.1M sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.18 Å
R-free 0.224
|
|
3A34
Effect of Ariginine on lysozyme
Deposited 2009-06-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ARG ARGININE × 4
CL CHLORIDE ION × 3
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å
R-free 0.226
|
|
3A3Q
Structure of N59D HEN EGG-WHITE LYSOZYME in complex with (GlcNAc)3
Deposited 2009-06-16
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:N59D
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;10% sodium chloride, 0.1M sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.287
|
|
3A3R
Structure of N59D HEN EGG-WHITE LYSOZYME
Deposited 2009-06-16
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Mutation:N59D
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;10% sodium chloride, 0.1M sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.249
|
|
3A67
Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme
Deposited 2009-08-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.225
|
|
3A6B
Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme
Deposited 2009-08-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.222
|
|
3A6C
Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme
Deposited 2009-08-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å
R-free 0.216
|
|
3A8Z
Crystal structure of hen egg white lysozyme
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.40 Å
R-free 0.212
|
|
3A90
Crystal structure of hen egg white lysozyme soaked with 1mM RhCl3
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.45 Å
R-free 0.210
|
|
3A91
Crystal structure of hen egg white lysozyme soaked with 5mM RhCl3
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
RH3 RHODIUM(III) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å
R-free 0.207
|
|
3A92
Crystal structure of hen egg white lysozyme soaked with 10mM RhCl3
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 6
RH3 RHODIUM(III) ION × 4
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.217
|
|
3A93
Crystal structure of hen egg white lysozyme soaked with 30mM RhCl3
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
RH3 RHODIUM(III) ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å
R-free 0.207
|
|
3A94
Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
RH3 RHODIUM(III) ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å
R-free 0.229
|
|
3A95
Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH3.8
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
RH3 RHODIUM(III) ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.243
|
|
3A96
Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2
Deposited 2009-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
RH3 RHODIUM(III) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.75 Å
R-free 0.225
|
|
3AGG
X-ray analysis of lysozyme in the absence of Arg
Deposited 2010-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 9
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;293 K;0.05M Sodium Acetate, 1.6M Sodium Chloride, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.60 Å
R-free 0.198
|
|
3AGH
X-ray analysis of lysozyme in the presence of 200 mM Arg
Deposited 2010-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;293 K;0.05M Sodium Acetate, 1.6M Sodium Chloride, 0.2M Arg, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.49 Å
R-free 0.205
|
|
3AGI
High resolution X-ray analysis of Arg-lysozyme complex in the presence of 500 mM Arg
Deposited 2010-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
ARG ARGININE × 3
NA SODIUM ION × 1
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;293 K;0.05 M Sodium Acetate
1.6 M Sodium Chloride
0.5 M Arg, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.20 Å
R-free 0.167
|
|
3AJN
Structural basis of glycine amide on suppression of protein aggregation by high resolution X-ray analysis
Deposited 2010-06-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GM1 AMINOMETHYLAMIDE × 4
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch;pH 4.5;293 K;0.05M sodium acetate, 1.0M glycine amide, pH 4.5, Batch, temperature 293K
|
Resolution 1.05 Å
R-free 0.163
|
|
3ATN
Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Deposited 2011-01-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 10
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch;pH 4.5;293 K;0.05M sodium acetate, 0.8M sodium chloride, pH 4.5, Batch, temperature 293K
|
Resolution 1.17 Å
R-free 0.174
|
|
3ATO
Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Deposited 2011-01-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GEE ethyl glycinate × 3
CL CHLORIDE ION × 10
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch;pH 4.5;293 K;0.05M sodium acetate, 1.0M glycine ethyl ester, pH 4.5, Batch, temperature 293K
|
Resolution 1.17 Å
R-free 0.175
|
|
3AW6
Crystal structure of tetragonal hen egg white lysozyme at 84.2% relative humidity
Deposited 2011-03-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
NA SODIUM ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;293 K;3-8%(w/v) NaCl, 100mM Na acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.220
|
|
3AW7
Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity
Deposited 2011-03-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
NA SODIUM ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;293 K;3-8%(w/v) NaCl, 100mM Na acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.218
|
|
3AZ4
Crystal structure of Co/O-HEWL
Deposited 2011-05-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CO COBALT (II) ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;300 K;Sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.62 Å
R-free 0.246
|
|
3AZ5
Crystal structure of Pt/O-HEWL
Deposited 2011-05-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;303 K;sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 30K, temperature 303K
|
Resolution 2.34 Å
R-free 0.303
|
|
3AZ6
Crystal structure of Co/T-HEWL
Deposited 2011-05-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CO COBALT (II) ION × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 4
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.222
|
|
3AZ7
Crystal structure of Pt/T-HEWL
Deposited 2011-05-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 100K, temperature 293K
|
Resolution 2.10 Å
R-free 0.303
|
|
3B6L
Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol
Deposited 2007-10-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
SDS DODECYL SULFATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;100mM sodium acetate buffer pH 4.6 and 2M sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.30 Å
R-free 0.214
|
|
3B72
Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol
Deposited 2007-10-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;300 K;50mM Tris pH8, 70% MPD and 6mM SDS, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.50 Å
R-free 0.241
|
|
3D9A
High Resolution Crystal Structure Structure of HyHel10 Fab Complexed to Hen Egg Lysozyme
Deposited 2008-05-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;0.2M di-Ammonium Citrate; 20% PEG 3350, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.20 Å
R-free 0.205
|
|
3E3D
Structure of hen egg white lysozyme with the magic triangle I3C
Deposited 2008-08-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
I3C 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid × 4
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;0.1M HEPES, 15%(wt/wt) PEG 3350, 8mM sodium I3C(magic triangle) solution, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.55 Å
R-free 0.220
|
|
3EMS
Effect of Ariginine on lysozyme
Deposited 2008-09-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ARG ARGININE × 4
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;1.5M NaCl, 0.5M Arg, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å
R-free 0.235
|
|
3EXD
Sulfur-SAD phased HEWL Crystal
Deposited 2008-10-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;291 K;100MM SODIUM CITRATE, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.49 Å
R-free 0.184
|
|
3F6Z
Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme
Deposited 2008-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
19–147(129 aa)
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;287 K;1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å
R-free 0.278
|
|
3F6Z
Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme
Deposited 2008-11-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;287 K;1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å
R-free 0.278
|
|
3F6Z
Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme
Deposited 2008-11-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;287 K;1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å
R-free 0.278
|
|
3G3A
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 5.6;296 K;2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å
R-free 0.271
|
|
3G3A
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 5.6;296 K;2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å
R-free 0.271
|
|
3G3A
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 5.6;296 K;2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å
R-free 0.271
|
|
3G3A
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 5.6;296 K;2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å
R-free 0.271
|
|
3G3B
Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 8.5;296 K;8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å
R-free 0.286
|
|
3G3B
Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 8.5;296 K;8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å
R-free 0.286
|
|
3G3B
Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 8.5;296 K;8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å
R-free 0.286
|
|
3G3B
Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Deposited 2009-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 8.5;296 K;8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å
R-free 0.286
|
|
3HFM
STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX. CRYSTAL STRUCTURE OF THE HY/HEL-10 FAB-LYSOZYME COMPLEX
Deposited 1988-08-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Y
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 3.00 Å
|
|
3IJU
Chicken egg white lysozyme by highly ordered APA (Anodic Porous Alumina) nanotemplate crystallization method
Deposited 2009-08-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å
R-free 0.237
|
|
3IJV
Chicken egg white lysozyme by classical hanging drop vapour diffusion method
Deposited 2009-08-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.264
|
|
3J4G
Structure of lysozyme solved by MicroED to 2.9 A
Deposited 2013-08-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
50 mM sodium acetate, 3.5 M sodium choride, 15% PEG 5000;pH 4.5;50 mM sodium acetate, 3.5 M sodium choride, 15% PEG 5000
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
R-free 0.278
|
|
3J6K
2.5A structure of lysozyme solved by MicroED
Deposited 2014-03-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
R-free 0.255
|
|
3KAM
Hen Egg White Lysozyme Derivatized with rhenium(I) diaquatricarbonyl cation
Deposited 2009-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
RE RHENIUM × 1
CMO CARBON MONOXIDE × 3
CL CHLORIDE ION × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;292 K;0.1 M MES, pH 5.5, 8% NaCl, 50 mg/mL protein, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.59 Å
R-free 0.215
|
|
3LYM
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME AT A HYDROSTATIC PRESSURE OF 1000 ATMOSPHERES
Deposited 1987-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
3LYO
CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 95% ACETONITRILE-WATER
Deposited 1998-03-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CCN ACETONITRILE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å
R-free 0.208
|
|
3LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
3LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
3LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
3LZT
REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
Deposited 1997-03-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 4.6;BATCH METHOD USED. 1% PROTEIN SOLUTION IN 100MM SODIUM ACETATE PH 4.5-4.6. SODIUM NITRATE ADDED TO A CONCENTRATION OF 20MGS/ML. CRYSTALS GROWN AT ROOM TEMPERATURE., batch method
|
Resolution 0.93 Å
R-free 0.114
|
|
3M18
Crystal structure of variable lymphocyte receptor VLRA.R2.1 in complex with hen egg lysozyme
Deposited 2010-03-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% (w/v) polyethylene glycol 2000 and 0.1 M Bis-Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.95 Å
R-free 0.240
|
|
3M3U
Effect of temperature on tryptophan fluorescence in lysozyme crystals
Deposited 2010-03-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;295 K;0.1M Sodium Acetate, 7% NaCl, 25% Ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.35 Å
R-free 0.199
|
|
3MBE
TCR 21.30 in complex with MHC class II I-Ag7HEL(11-27)
Deposited 2010-03-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain P
28–45(18 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;295 K;20% PEG4000, 0.2M K formate, 0.1M Na Cacodylate., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.89 Å
R-free 0.281
|
|
3MBE
TCR 21.30 in complex with MHC class II I-Ag7HEL(11-27)
Deposited 2010-03-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain Q
28–45(18 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;295 K;20% PEG4000, 0.2M K formate, 0.1M Na Cacodylate., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.89 Å
R-free 0.281
|
|
3N9A
Mite-y Lysozyme: Vegemite
Deposited 2010-05-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;Crystals were obtained by counter diffusion in capillary tubes stuck into Vegemite., pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.40 Å
R-free 0.189
|
|
3N9C
Mite-y Lysozyme: Marmite
Deposited 2010-05-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;Crystals were obtained using counter diffusion using Marmite, pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.50 Å
R-free 0.190
|
|
3N9E
Mite-y Lysozyme: Promite
Deposited 2010-05-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;Crystals were obtained by counter diffusion against Promite, pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.38 Å
R-free 0.183
|
|
3OJP
D52N Mutant of Hen Egg White Lysozyme (HEWL)
Deposited 2010-08-23
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:D52N
|
ACT ACETATE ION × 3
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;291 K;NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.81 Å
R-free 0.219
|
|
3OK0
E35A Mutant of Hen Egg White Lysozyme (HEWL)
Deposited 2010-08-24
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:E35A
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;291 K;NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.82 Å
R-free 0.184
|
|
3P4Z
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU GOLD ION × 1
CL CHLORIDE ION × 2
AU3 GOLD 3+ ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.60 Å
R-free 0.236
|
|
3P64
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU3 GOLD 3+ ION × 3
AU GOLD ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.30 Å
R-free 0.234
|
|
3P65
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU3 GOLD 3+ ION × 4
AU GOLD ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 2.10 Å
R-free 0.225
|
|
3P66
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU3 GOLD 3+ ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.36 Å
R-free 0.243
|
|
3P66
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU3 GOLD 3+ ION × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.36 Å
R-free 0.243
|
|
3P68
Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme
Deposited 2010-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU3 GOLD 3+ ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.8;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.8, EVAPORATION, temperature 298K
|
Resolution 1.60 Å
R-free 0.255
|
|
3QE8
Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(H2O)(Im)]+
Deposited 2011-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.54;298 K;0.05M acetate buffer pH 4.54, 0.9M NaCl, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.49 Å
R-free 0.219
|
|
3QE8
Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(H2O)(Im)]+
Deposited 2011-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.54;298 K;0.05M acetate buffer pH 4.54, 0.9M NaCl, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.49 Å
R-free 0.219
|
|
3QNG
Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(L-serine)]
Deposited 2011-02-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
REJ Tricarbonyl (L-serine) rhenium(I) × 1
CL CHLORIDE ION × 1
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.54;298 K;0.05M Acetate buffer, 0.9M NaCl, pH 4.54, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.55 Å
R-free 0.217
|
|
3QY4
Crystallization and in situ data collection of Lysozyme using the Crystal Former
Deposited 2011-03-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;298 K;Crystals were grown through liquid-liquid diffusion using the Crystal Former from Microlytic, pH 4.6, microfluidic, temperature 298K
|
Resolution 1.65 Å
R-free 0.212
|
|
3RNX
Crystal Structure of Lysozyme in 30% ethanol
Deposited 2011-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EOH ETHANOL × 8
CL CHLORIDE ION × 9
ACT ACETATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;277 K;40 mM sodium acetate, 150mM sodium chloride, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.86 Å
R-free 0.207
|
|
3RT5
Lysozyme in 30% propanol
Deposited 2011-05-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 8
IPA ISOPROPYL ALCOHOL × 6
POL N-PROPANOL × 1
ACT ACETATE ION × 1
CL CHLORIDE ION × 14
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;277 K;40mM Sodium Acetate, 150mM Sodium chloride, 30% 2-propanol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.75 Å
R-free 0.214
|
|
3RU5
Silver Metallated Hen Egg White Lysozyme at 1.35 A
Deposited 2011-05-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP RESIDUES 19-147
|
Not recorded
|
AG SILVER ION × 1
NO3 NITRATE ION × 6
NA SODIUM ION × 5
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;293 K;5 mM silver(I) 3-hydroxybutyrate, 3% (w/v) sodium nitrate, 25% (v/v) ethylene glycol, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.35 Å
R-free 0.215
|
|
3RW8
Crystal structure of lysozyme in 40% ethanol
Deposited 2011-05-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EOH ETHANOL × 14
CL CHLORIDE ION × 9
NA SODIUM ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;277 K;40mM Sodium acetate, 150mM Sodium chloride, 40% Ethanol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.85 Å
R-free 0.227
|
|
3RZ4
Hen egg-white lysozyme in HEPES buffer at pH 7.5
Deposited 2011-05-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:unp residues 19-147
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;0.8M potassium sodium tartrate tetrahydrate, 0.1M HEPES sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.80 Å
R-free 0.223
|
|
3SP3
Lysozyme in 20% sucrose
Deposited 2011-07-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;277 K;40 mM Sodium Acetate, 150mM Sodium Chloride, 20% Sucrose, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.80 Å
R-free 0.229
|
|
3T6U
Crystal Structure of Lysozyme in 40% sucrose
Deposited 2011-07-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;277 K;40mM Sodium acetate, 150mM Sodium chloride, 40% Sucrose , pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.21 Å
R-free 0.218
|
|
3TMU
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.195
|
|
3TMU
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 16
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.195
|
|
3TMV
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=0.12MGy)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.219
|
|
3TMV
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=0.12MGy)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 16
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.219
|
|
3TMW
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.204
|
|
3TMW
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 16
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.204
|
|
3TMX
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=1.9MGy)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.210
|
|
3TMX
X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=1.9MGy)
Deposited 2011-08-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 16
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.210
|
|
3TXB
HEWL co-crystallization with cisplatin in aqueous media with glycerol as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
GOL GLYCEROL × 30
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3 mg cisplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.59 Å
R-free 0.257
|
|
3TXD
HEWL co-crystallization with carboplatin in aqueous media with glycerol as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 3
GOL GLYCEROL × 13
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3.13 mg carboplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.53 Å
R-free 0.258
|
|
3TXE
HEWL co-crystallization with carboplatin in aqueous media with paratone as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
MEB 2-methylprop-1-ene × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3.7 mg carboplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.259
|
|
3TXF
HEWL co-crystallization with cisplatin in DMSO media with glycerol as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
CPT Cisplatin × 1
DMS DIMETHYL SULFOXIDE × 16
GOL GLYCEROL × 21
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.69 Å
R-free 0.249
|
|
3TXG
HEWL co-crystallization with cisplatin in DMSO media with paratone as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
CPT Cisplatin × 2
DMS DIMETHYL SULFOXIDE × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.239
|
|
3TXH
HEWL co-crystallization with carboplatin in DMSO media with glycerol as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 10
GOL GLYCEROL × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.69 Å
R-free 0.233
|
|
3TXI
HEWL co-crystallization with carboplatin in DMSO media with paratone as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 14
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å
R-free 0.233
|
|
3TXJ
HEWL co-crystallization with NAG with silicone oil as the cryoprotectant
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL + 117 mg N-acetylglucosamine in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with silicone oil as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 2.48 Å
R-free 0.289
|
|
3TXK
HEWL co-crystallization with cisplatin in DMSO media with paratone as the cryoprotectant at pH 6.5
Deposited 2011-09-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
DMS DIMETHYL SULFOXIDE × 4
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 6.5;277 K;20 mg HEWL + 1.1 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 6.5, BATCH, temperature 277K
|
Resolution 3.00 Å
R-free 0.259
|
|
3ULR
Lysozyme contamination facilitates crystallization of a hetero-trimericCortactin:Arg:Lysozyme complex
Deposited 2011-11-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;297 K;1.0M Na Citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
|
Resolution 1.65 Å
R-free 0.225
|
|
3W6A
Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked wiht 5mM [Ru(benzene)Cl2]2
Deposited 2013-02-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
ACT ACETATE ION × 1
RBN Benzeneruthenium(II) chloride × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.77 Å
R-free 0.272
|
|
3WL2
Monoclinic Lysozyme at 0.96 A resolution
Deposited 2013-11-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;50mM Sodium Acetate pH4.7, 20% Ethylene glycol, 0.4M Sodium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 0.96 Å
R-free 0.195
|
|
3WL2
Monoclinic Lysozyme at 0.96 A resolution
Deposited 2013-11-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;50mM Sodium Acetate pH4.7, 20% Ethylene glycol, 0.4M Sodium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 0.96 Å
R-free 0.195
|
|
3WMK
Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K
Deposited 2013-11-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;80mg/ml hen egg-white lysozyme, 100mM Sodium Acetate, 1M NaCl , pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.46 Å
R-free 0.235
|
|
3WPJ
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE
Deposited 2014-01-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.206
|
|
3WPK
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC
Deposited 2014-01-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.197
|
|
3WPL
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC
Deposited 2014-01-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.223
|
|
3WU7
Spatiotemporal development of soaked protein crystal; derivative 250 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.215
|
|
3WU7
Spatiotemporal development of soaked protein crystal; derivative 250 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.215
|
|
3WU8
Spatiotemporal development of soaked protein crystal; derivative 1080 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.216
|
|
3WU8
Spatiotemporal development of soaked protein crystal; derivative 1080 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.216
|
|
3WU9
Spatiotemporal development of soaked protein crystal; derivative 1580 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.207
|
|
3WU9
Spatiotemporal development of soaked protein crystal; derivative 1580 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.207
|
|
3WUA
Spatiotemporal development of soaked protein crystal; derivative 3610 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.217
|
|
3WUA
Spatiotemporal development of soaked protein crystal; derivative 3610 sec
Deposited 2014-04-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded
|
PT4 PLATINUM (IV) ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD;pH 4.5;293 K;25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å
R-free 0.217
|
|
3WUL
Crystal structure of hen egg-white lysozyme
Deposited 2014-04-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å
R-free 0.230
|
|
3WUM
Crystal structure of hen egg-white lysozyme
Deposited 2014-04-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å
R-free 0.226
|
|
3WUN
Crystal structure of hen egg-white lysozyme
Deposited 2014-04-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.40 Å
R-free 0.230
|
|
3WVX
Structure of D48A hen egg white lysozyme
Deposited 2014-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Mutation:D48A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;293 K;0.1M Sodium acetate buffer, 1.2M NaCl, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.58 Å
R-free 0.206
|
|
3WVY
Structure of D48A hen egg white lysozyme in complex with (GlcNAc)4
Deposited 2014-06-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Mutation:D48A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4;293 K;0.1M Sodium acetate buffer, 1.2M NaCl, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.56 Å
R-free 0.243
|
|
3WW5
Crystal Structure of hen egg white lysozyme mutant N46E/D52S
Deposited 2014-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Mutation:N46E, D52S
|
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;0.6M sodium chloride, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.53 Å
R-free 0.222
|
|
3WW6
Crystal Structure of hen egg white lysozyme mutant N46D/D52S
Deposited 2014-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Mutation:N46D, D52S
|
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;0.6M sodium chloride, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.53 Å
R-free 0.205
|
|
3WXT
Crystal structure of hen egg-white lysozyme
Deposited 2014-08-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å
R-free 0.230
|
|
3WXU
Crystal structure of hen egg-white lysozyme
Deposited 2014-08-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å
R-free 0.211
|
|
3ZEK
Hen egg-white lysozyme structure determined at room temperature by in- situ diffraction in ChipX
Deposited 2012-12-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;293 K;LYSOZYME WAS CRYSTALLIZED AT 293 K BY COUNTER-DIFFUSION IN A CHIPX MICROFLUIDIC DEVICE. MICROFLUIDIC CHANNELS WERE FILLED WITH A 50 MG/ML LYSOZYME SOLUTION CONTAINING 0.3% BETA-OCTYL-GLUCOSIDE (M/V) TO FACILITATE SAMPLE LOADING BY CAPILLARITY. CRYSTALLANT RESERVOIRS WERE FILLED WITH 1 M NACL CONTAINING 30% (M/V) PEG-3350 OR 2 M NACL, AND 0.1 M SODIUM ACETATE PH 4.5.
|
Resolution 1.43 Å
R-free 0.183
|
|
3ZVQ
Crystal Structure of proteolyzed lysozyme
Deposited 2011-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–88(70 aa)
Fragment:RESIDUES 19-88
Chain B
90–147(58 aa)
Fragment:RESIDUES 90-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
298 K;20MG/ML PROTEOLYZED LYSOZYME, 15%PEG3500, 25C
|
Resolution 2.00 Å
R-free 0.237
|
|
4A7D
X-ray crystal structure of HEWL flash-cooled at high pressure
Deposited 2011-11-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 9
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;0.1 M SODIUM ACETATE, 15% (W/V) SODIUM CHLORIDE, PH 4.6
|
Resolution 1.50 Å
R-free 0.203
|
|
4A8A
Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozyme
Deposited 2011-11-20
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: tridecameric
|
Chain M
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM HEPES/NAOH, 150 MM NACL;pH 7.5;20 MM HEPES/NAOH, 150 MM NACL
cryo-EM vitrification conditions
Cryogen ETHANE;VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- MANUAL PLUNGER, METHOD- BLOT FOR 2 SECONDS BEFORE PLUNGING,
|
Resolution 14.20 Å
|
|
4A8B
Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes
Deposited 2011-11-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 18
PDB declaration: octadecameric
|
Chain M
19–147(129 aa)
Chain N
19–147(129 aa)
Chain O
19–147(129 aa)
Chain P
19–147(129 aa)
Chain Q
19–147(129 aa)
Chain R
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM HEPES/NAOH, 150 MM NACL;pH 7.5;20 MM HEPES/NAOH, 150 MM NACL
cryo-EM vitrification conditions
Cryogen ETHANE;VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- MANUAL PLUNGER, METHOD- BLOT FOR 2 SECONDS BEFORE PLUNGING,
|
Resolution 13.00 Å
|
|
4AGA
Hofmeister effects of ionic liquids in protein crystallization: direct and water-mediated interactions
Deposited 2012-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
CHT CHOLINE ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;CHICKEN EGG WHITE LYSOZYME (FLUKA) HAS BEEN DISSOLVED IN 50 MM SODIUM ACETATE BUFFER PH 4.57 AND CRYSTALLIZED BY SITTING DROP DIFFUSION METHOD. EACH DROP CONTAINED 20 MG/ML OF LYSOZYME AND 5.5 PERCENT OF NACL IN 25 MM OF NA[AC] PH 4.57
|
Resolution 1.50 Å
R-free 0.211
|
|
4AXT
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME FROM AN AUTO HARVESTED CRYSTAL, Control Experiment
Deposited 2012-06-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.10 Å
R-free 0.177
|
|
4B0D
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME FROM AN AUTO HARVESTED CRYSTAL
Deposited 2012-07-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.10 Å
R-free 0.208
|
|
4B1A
Crystal structure of lysozyme with Keggin molecule
Deposited 2012-07-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
K3G Phosphomolybdate keggin × 2
NA SODIUM ION × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;2-10% (M/V) NACL AND 0.1 M ACETATE BUFFER PH 4.5 (THE PROTEIN:WELL SOLUTION RATIO IN THE DROP WAS 1:1 WITH THE FINAL DROP VOLUME OF 4 MICROLITER USING A PROTEIN STOCK CONCENTRATION OF AROUND 50 MG/ML.
|
Resolution 1.67 Å
R-free 0.267
|
|
4B49
1.15 A Structure of Lysozyme Crystallized without 2-methyl-2,4- pentanediol
Deposited 2012-07-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS PH 8.0. CONDITIONS IN RESERVOIR: 200MM TRIS PH 8.0.
|
Resolution 1.15 Å
R-free 0.151
|
|
4B4E
1.00 A Structure of Lysozyme Crystallized with (R)-2-methyl-2,4- pentanediol
Deposited 2012-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS (PH 8.0) AND 60% V/V (R)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS (PH 8.0).
|
Resolution 1.00 Å
R-free 0.144
|
|
4B4I
1.20 A Structure of Lysozyme Crystallized with (S)-2-methyl-2,4- pentanediol
Deposited 2012-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS (PH=8.0) AND 30% (V/V) (S)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS (PH=8.0) AND 60% (V/V) (S)-MPD.
|
Resolution 1.20 Å
R-free 0.167
|
|
4B4J
1.25 A Structure of Lysozyme Crystallized with (RS)-2-methyl-2,4- pentanediol
Deposited 2012-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS PH 8.0 AND 30% (V/V) (RS)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS PH 8.0 AND 60% (V/V) (RS)-MPD.
|
Resolution 1.25 Å
R-free 0.156
|
|
4BAD
Hen egg-white lysozyme structure in complex with the europium tris- hydroxymethyltriazoledipicolinate complex at 1.35 A resolution.
Deposited 2012-09-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
HM6 4-(4-(hydroxymethyl)-1h-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid × 4
ACT ACETATE ION × 1
CL CHLORIDE ION × 6
NA SODIUM ION × 2
EU3 EUROPIUM (III) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;293 K;0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00025 M PROTEIN, 0.0027 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.35 Å
R-free 0.172
|
|
4BAF
Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethyltriazoledipicolinate complex at 1.51 A resolution.
Deposited 2012-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EU3 EUROPIUM (III) ION × 1
IKX 4-(4-(2-hydroxyethyl)-1H-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid × 3
ACT ACETATE ION × 1
CL CHLORIDE ION × 9
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;293 K;0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00046 M PROTEIN, 0.001.4 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.51 Å
R-free 0.179
|
|
4BAP
Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethylcholinetriazoledipicolinate complex at 1.21 A resolution.
Deposited 2012-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DCJ N-((1-(2,6-DICARBOXYPYRIDIN-4-YL)-1H-1,2,3-TRIAZOL-4-YL)METHYL)-2-HYDROXY-N,N-DIMETHYLETHANAMINIUM × 3
ACT ACETATE ION × 1
CL CHLORIDE ION × 8
NA SODIUM ION × 2
EU3 EUROPIUM (III) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6;293 K;0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00067 M PROTEIN, 0.012 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.21 Å
R-free 0.178
|
|
4BS7
Hen egg-white lysozyme structure determined at room temperature by in- situ diffraction and SAD phasing in ChipX
Deposited 2013-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
YB YTTERBIUM (III) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;293 K;LYSOZYME WAS CRYSTALLIZED AT 293 K BY COUNTER-DIFFUSION IN A CHIPX MICROFLUIDIC DEVICE. MICROFLUIDIC CHANNELS WERE FILLED WITH A 50 MG/ML LYSOZYME SOLUTION CONTAINING 0.3% BETA-OCTYL-GLUCOSIDE (M/V) TO FACILITATE SAMPLE LOADING BY CAPILLARITY. CRYSTALLANT RESERVOIRS WERE FILLED WITH 1.8 M NACL, 0.1 M SODIUM ACETATE PH 4.5 AND 0.05 M HPDO3A-YB.
|
Resolution 1.70 Å
R-free 0.193
|
|
4C3W
Vanadium(IV)-Picolinate Complexed with Lysozyme
Deposited 2013-08-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AIV hydroxy(oxo)bis(pyridine-2-carboxylato-kappa~2~N,O)vanadium(3+) × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.28 Å
R-free 0.175
|
|
4CJ2
Crystal structure of HEWL in complex with affitin H4
Deposited 2013-12-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–147(147 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.50 Å
R-free 0.178
|
|
4CJ2
Crystal structure of HEWL in complex with affitin H4
Deposited 2013-12-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.50 Å
R-free 0.178
|
|
4D9Z
Lysozyme at 318K
Deposited 2012-01-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
GOL GLYCEROL × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.71 Å
R-free 0.228
|
|
4DC4
Lysozyme Trimer
Deposited 2012-01-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å
R-free 0.300
|
|
4DC4
Lysozyme Trimer
Deposited 2012-01-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å
R-free 0.300
|
|
4DC4
Lysozyme Trimer
Deposited 2012-01-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å
R-free 0.300
|
|
4DD0
EVAL processed HEWL, cisplatin aqueous glycerol
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 13
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with cisplatin in aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.236
|
|
4DD1
EVAL processed HEWL, cisplatin aqueous paratone
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
MEB 2-methylprop-1-ene × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;295 K;HEWL co-crystallized with cisplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.227
|
|
4DD1
EVAL processed HEWL, cisplatin aqueous paratone
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
MEB 2-methylprop-1-ene × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;295 K;HEWL co-crystallized with cisplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.227
|
|
4DD2
EVAL processed HEWL, carboplatin aqueous glycerol
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with carboplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.55 Å
R-free 0.245
|
|
4DD3
EVAL processed HEWL, carboplatin aqueous paratone
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 4
MEB 2-methylprop-1-ene × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with carboplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å
R-free 0.235
|
|
4DD7
EVAL processed HEWL, carboplatin DMSO glycerol
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 7
GOL GLYCEROL × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with carboplatin in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å
R-free 0.223
|
|
4DD9
EVAL processed HEWL, carboplatin DMSO paratone
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 14
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with carboplatin in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å
R-free 0.236
|
|
4DDA
EVAL processed HEWL, NAG
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with 150 mM excess N-acetylglucosamine in 1 mL 0.05 M sodium acetate and 1 mL 10% sodium chloride, pH 4.7, BATCH, temperature 295K
|
Resolution 2.48 Å
R-free 0.285
|
|
4DDB
EVAL processed HEWL, cisplatin DMSO paratone pH 6.5
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CPT Cisplatin × 2
DMS DIMETHYL SULFOXIDE × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 6.5;277 K;HEWL co-crystallized with cisplatin in 462.5 uL 0.05 M sodium acetate, pH 6.5, 462.5 uL 10% sodium chloride, and 75 uL DMSO, BATCH, temperature 277K
|
Resolution 3.00 Å
R-free 0.280
|
|
4DDC
EVAL processed HEWL, cisplatin DMSO NAG silicone oil
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CPT Cisplatin × 2
DMS DIMETHYL SULFOXIDE × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;277 K;HEWL co-crystallized with cisplatin and N-acetylglucosamine in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å
R-free 0.253
|
|
4DDC
EVAL processed HEWL, cisplatin DMSO NAG silicone oil
Deposited 2012-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CPT Cisplatin × 2
DMS DIMETHYL SULFOXIDE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;277 K;HEWL co-crystallized with cisplatin and N-acetylglucosamine in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å
R-free 0.253
|
|
4DT3
Crystal structure of zinc-charged lysozyme
Deposited 2012-02-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ZN ZINC ION × 3
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
microbath;pH 4;295 K;0.1M citric acid, 1M NaCl, pH 4.0, microbath, temperature 295K
|
Resolution 1.80 Å
R-free 0.208
|
|
4E3U
Crystal Structure of Hen Egg White Lysozyme Cryoprotected in Proline
Deposited 2012-03-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PRO PROLINE × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;296 K;1.0M sodium chloride, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 296K
|
Resolution 1.50 Å
R-free 0.216
|
|
4EOF
Lysozyme in the presence of arginine
Deposited 2012-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
GOL GLYCEROL × 2
ARG ARGININE × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;Protein 40mg/ml, Sodium acetate 50mM, NaCl 1.7M, Arginine 200mM., pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.83 Å
R-free 0.246
|
|
4ET8
Hen egg-white lysozyme solved from 40 fs free-electron laser pulse data
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;293 K;After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), BATCH, temperature 293K
|
Resolution 1.90 Å
R-free 0.229
|
|
4ET9
Hen egg-white lysozyme solved from 5 fs free-electron laser pulse data
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;293 K;After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), BATCH, temperature 293K
|
Resolution 1.90 Å
R-free 0.227
|
|
4ETA
Lysozyme, room temperature, 400 kGy dose
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å
R-free 0.180
|
|
4ETB
lysozyme, room temperature, 200 kGy dose
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å
R-free 0.190
|
|
4ETC
Lysozyme, room temperature, 24 kGy dose
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å
R-free 0.200
|
|
4ETD
Lysozyme, room-temperature, rotating anode, 0.0026 MGy
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.90 Å
R-free 0.192
|
|
4ETE
Lysozyme, room-temperature, rotating anode, 0.0021 MGy
Deposited 2012-04-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å
R-free 0.195
|
|
4FJR
Mode of interaction of Merocyanine 540 with HEW Lysozyme
Deposited 2012-06-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW Lysozyme, UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 2
0UF 3-[(2E)-2-[(2Z)-4-(1,3-dibutyl-4,6-dioxo-2-thioxotetrahydropyrimidin-5(2H)-ylidene)but-2-en-1-ylidene]-1,3-benzoxazol-3(2H)-yl]propane-1-sulfonic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;7% NaCl in 100mM Na-Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.86 Å
R-free 0.246
|
|
4G49
Room temperature X-ray diffraction of cisplatin binding to HEWL in aqueous media after 15 months of crystal storage
Deposited 2012-07-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 2
ACT ACETATE ION × 2
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with cisplatin in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.40 Å
R-free 0.210
|
|
4G4B
Room temperature X-ray diffraction study of cisplatin binding to HEWL in DMSO media with NAG after 7 months of crystal storage
Deposited 2012-07-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CPT Cisplatin × 2
DMS DIMETHYL SULFOXIDE × 5
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with cisplatin and NAG in 7.5% DMSO media in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.10 Å
R-free 0.227
|
|
4G4C
Room temperature X-ray diffraction study of carboplatin binding to HEWL in DMSO media after 13 months of crystal storage
Deposited 2012-07-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
QPT carboplatin × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;HEWL co-crystallized with carboplatin (with DMSO added) in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.00 Å
R-free 0.203
|
|
4G4H
100K X-ray diffraction study of carboplatin binding to HEWL in DMSO media after 13 months of crystal storage
Deposited 2012-07-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 2
CL CHLORIDE ION × 3
QPT carboplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.7;295 K;49 mg HEWL co-crystallized with 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 462.5 uL 10% sodium chloride + 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 2.00 Å
R-free 0.268
|
|
4GCB
100K X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL
Deposited 2012-07-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 7
DMS DIMETHYL SULFOXIDE × 3
CPT Cisplatin × 2
PT PLATINUM (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;277 K;49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å
R-free 0.210
|
|
4GCC
Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 1
Deposited 2012-07-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 4
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;277 K;49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.00 Å
R-free 0.248
|
|
4GCD
Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 2
Deposited 2012-07-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 3
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;277 K;49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.80 Å
R-free 0.240
|
|
4GCE
Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 3
Deposited 2012-07-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;277 K;49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.90 Å
R-free 0.234
|
|
4GCF
Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 4
Deposited 2012-07-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PT PLATINUM (II) ION × 2
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;277 K;49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 3.50 Å
R-free 0.235
|
|
4GLA
OBody NL8 bound to hen egg-white lysozyme
Deposited 2012-08-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.75 Å
R-free 0.296
|
|
4GLA
OBody NL8 bound to hen egg-white lysozyme
Deposited 2012-08-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.75 Å
R-free 0.296
|
|
4GLV
OBody AM3L09 bound to hen egg-white lysozyme
Deposited 2012-08-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PO4 PHOSPHATE ION × 2
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å
R-free 0.245
|
|
4GLV
OBody AM3L09 bound to hen egg-white lysozyme
Deposited 2012-08-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 6
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å
R-free 0.245
|
|
4GLV
OBody AM3L09 bound to hen egg-white lysozyme
Deposited 2012-08-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PO4 PHOSPHATE ION × 1
GOL GLYCEROL × 7
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å
R-free 0.245
|
|
4GLV
OBody AM3L09 bound to hen egg-white lysozyme
Deposited 2012-08-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
PO4 PHOSPHATE ION × 2
GOL GLYCEROL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.3;291 K;0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å
R-free 0.245
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 4
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain I
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain K
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain M
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain O
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN3
OBody AM1L10 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain Q
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å
R-free 0.228
|
|
4GN4
OBody AM2EP06 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GOL GLYCEROL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;291 K;0.2 M HEPES, 13% MPEG5000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å
R-free 0.194
|
|
4GN5
OBody AM3L15 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
GOL GLYCEROL × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 5% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å
R-free 0.202
|
|
4GN5
OBody AM3L15 bound to hen egg-white lysozyme
Deposited 2012-08-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;291 K;0.2 M HEPES, 5% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å
R-free 0.202
|
|
4H1P
Use of Europium for SAD Phasing at the Cu K alpha wavelength
Deposited 2012-09-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EU EUROPIUM ION × 2
CL CHLORIDE ION × 14
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Sodium chloride, EuCl3, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, temperature 293.0K
|
Resolution 2.30 Å
R-free 0.231
|
|
4H8X
Radiation damage study of lysozyme - 0.07 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate buffer and 25% ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.200
|
|
4H8Y
Radiation damage study of lysozyme- 0.14 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.208
|
|
4H8Z
Radiation damage study of lysozyme - 0.21 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.205
|
|
4H90
Radiation damage study of lysozyme - 0.28 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.205
|
|
4H91
Radiation damage study of lysozyme - 0.35 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.199
|
|
4H92
Radiation damage study of lysozyme- 0.42 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.199
|
|
4H93
Radiation damage study of lysozyme - 0.49 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.202
|
|
4H94
Radiation damage in lysozyme - 0.56 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.207
|
|
4H9A
Radiation damage study of lysozyme - 0.63 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.201
|
|
4H9B
Radiation damage study of lysozyme - 0.70 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.203
|
|
4H9C
Radiation damage study of lysozyme - 0.77 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.204
|
|
4H9E
Radiation damage study of lysozyme - 0.84 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.204
|
|
4H9F
Radiation damage study of lysozyme - 0.91 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.204
|
|
4H9H
Radiation damage study of lysozyme - 0.98 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.202
|
|
4H9I
Radiation damage study of lysozyme - 1.05 MGy
Deposited 2012-09-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å
R-free 0.203
|
|
4HP0
Crystal Structure of Hen Egg White Lysozyme in complex with GN3-M
Deposited 2012-10-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.2M Magnesium chloride hexahydrate, 0.1M BIS-TRIS(pH6.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.19 Å
R-free 0.173
|
|
4HPI
Crystal Structure of Hen Egg White Lysozyme complex with GN2-M
Deposited 2012-10-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.2M Magnesium chloride hexahydrate, 0.1M BIS-TRIS(pH6.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.19 Å
R-free 0.180
|
|
4HSF
Lysozyme with Arginine at 318K
Deposited 2012-10-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ARG ARGININE × 2
CL CHLORIDE ION × 4
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl.
Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, 300mM arginine , pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.82 Å
R-free 0.225
|
|
4HTK
Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 2.17 x 10e+12 X-ray photons
Deposited 2012-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.73;293 K;0.100M sodium acetate, pH 4.73, 5% sodium chloride, w/v, 25% ethylene glycol, v/v, micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.20 Å
R-free 0.152
|
|
4HTN
Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 1.32 x 10e+12 X-ray photons
Deposited 2012-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.73;293 K;0.100M sodium acetate, pH 4.73, 5% sodium chloride (w/v), 25% ethylene glycol (v/v), micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å
R-free 0.158
|
|
4HTQ
Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 6.70 x 10e+11 X-ray photons
Deposited 2012-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.73;293 K;0.100M sodium acetate, pH 4.73, 5% sodium chloride (w/v), 25% ethylene glycol (v/v), micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.40 Å
R-free 0.163
|
|
4HV1
Laser-induced microfragmentation of lysozyme crystals allows X-ray nanodiffraction characterization of individual domains (lb4)
Deposited 2012-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;LB-nanofilms were generated by the Langmuir Blodgett (LB) technique and its variation, a modified Langmuir Schaeffer technique (LS).
40 mg/ml, 50 mM, sodium acetate pH 4.5, 0.9 NaCl 1:1 in 50 mM sodium acetate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å
R-free 0.278
|
|
4HV2
Laser-induced microfragmentation of lysozyme crystals allows X-ray nanodiffraction characterization of individual domains (lb5)
Deposited 2012-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;LB-nanofilms were generated by the Langmuir Blodgett (LB) technique and its variation, a modified Langmuir Schaeffer technique (LS).
40 mg/ml, 50 mM, sodium acetate pH 4.5, 0.9 NaCl 1:1 in 50 mM sodium acetate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å
R-free 0.319
|
|
4I8S
Hen Lysozyme protein crystallization via standard hanging drop vapor diffusion
Deposited 2012-12-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.00 Å
R-free 0.259
|
|
4IAS
HEW Lysozyme by langmuir- blodgett modified vapour diffusion
Deposited 2012-12-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.60 Å
R-free 0.301
|
|
4IAT
HEW Lysozyme by langmuir- blodgett modified vapour diffusion
Deposited 2012-12-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
R-free 0.242
|
|
4II8
Lysozyme with Benzyl alcohol
Deposited 2012-12-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
GOL GLYCEROL × 2
010 phenylmethanol × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;Protein Solution: 20mg/ml lysozyme,50mM sodium acetate, 150mM NaCl,
Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, 2.5% benzyl alcohol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.88 Å
R-free 0.225
|
|
4J1A
X-ray structure of the adduct between hen egg white lysozyme and AziRu (green crystal)
Deposited 2013-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;1.0-1.4 M NaCl, 0.050 M acetate. Crystals soaked in a saturated solution of AziRu containing 2.4 M NaCl in the same buffer. After a few hours, crystals changed their colour to yellow and then green. In a few days they turned to black., pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.79 Å
R-free 0.237
|
|
4J1B
X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal)
Deposited 2013-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;1.0-1.4 M NaCl, 0.050 M acetate buffer.Crystals were soaked in a saturated solution of AziRu containing 2.4 M NaCl in the same buffer. After a few hours, crystals changed their colour to yellow and then green. In a few days they turned to black, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.66 Å
R-free 0.246
|
|
4J7V
Crystal structure of cross-linked hen egg white lysozyme soaked with 5mM [Ru(benzene)Cl2]2
Deposited 2013-02-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
RBN Benzeneruthenium(II) chloride × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.3;293 K;sodium chloride, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.54 Å
R-free 0.235
|
|
4KXI
Crystallographic study of the complex of Ni(II) Schiff base complex and HEW Lysozyme
Deposited 2013-05-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NI NICKEL (II) ION × 1
SNF (N1E, N2E)-N1, N2-bis(pyridine-2-ylmethylene)propane-1,2-diamine, nickel(II) salt × 1
LCP PERCHLORATE ION × 5
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;Ni-Schiff-base solution , pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.256
|
|
4LFP
X-ray structure of the adduct between hen egg white lysozyme and a homoleptic gold(I) complex with the saccharynate ligand
Deposited 2013-06-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU GOLD ION × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.72 Å
R-free 0.236
|
|
4LFX
X-ray structure of the adduct between hen egg white lysozyme and Auoxo6, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers
Deposited 2013-06-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
AU GOLD ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.10 Å
R-free 0.281
|
|
4LGK
X-ray structure of the adduct between hen egg white lysozyme and Au2Phen, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers
Deposited 2013-06-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU GOLD ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.96 Å
R-free 0.300
|
|
4LT0
HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 1 processed using the EVAL software package
Deposited 2013-07-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 4
QPT carboplatin × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;294 K;2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.10 Å
R-free 0.283
|
|
4LT1
HEWL co-crystallised with Carboplatin in non-NaCl conditions: crystal 1 processed using the XDS software package
Deposited 2013-07-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 7
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
QPT carboplatin × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;294 K;2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.30 Å
R-free 0.248
|
|
4LT2
HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the EVAL software package
Deposited 2013-07-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 5
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;294 K;2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 5 weeks after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.00 Å
R-free 0.265
|
|
4LT3
HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the XDS software package
Deposited 2013-07-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
DMS DIMETHYL SULFOXIDE × 4
QPT carboplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;294 K;2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 5 weeks after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.00 Å
R-free 0.258
|
|
4LYB
CdS within a lysoyzme single crystal
Deposited 2013-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CD CADMIUM ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K , temperature 298.0K
|
Resolution 1.21 Å
|
|
4LYB
CdS within a lysoyzme single crystal
Deposited 2013-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CD CADMIUM ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K , temperature 298.0K
|
Resolution 1.21 Å
|
|
4LYC
Cd ions within a lysoyzme single crystal
Deposited 2013-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CD CADMIUM ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K, temperature 298.0K
|
Resolution 1.35 Å
|
|
4LYC
Cd ions within a lysoyzme single crystal
Deposited 2013-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CD CADMIUM ION × 18
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.5;298 K;6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K, temperature 298.0K
|
Resolution 1.35 Å
|
|
4LYM
CRYSTAL STRUCTURE OF LOW HUMIDITY TETRAGONAL LYSOZYME AT 2.1-ANGSTROMS RESOLUTION. VARIABILITY IN HYDRATION SHELL AND ITS STRUCTURAL CONSEQUENCES
Deposited 1990-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.10 Å
|
|
4LYO
CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN NEAT ACETONITRILE, THEN BACK-SOAKED IN WATER
Deposited 1998-03-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3;PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 2.05 Å
R-free 0.193
|
|
4LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
4LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
4LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
4LZT
ATOMIC RESOLUTION REFINEMENT OF TRICLINIC HEW LYSOZYME AT 295K
Deposited 1997-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method;pH 4.5;BATCH METHOD USED. 1% PROTEIN SOLUTION IN 100MM SODIUM ACETATE PH 4.5-4.6. SODIUM NITRATE ADDED TO A CONCENTRATION OF 20MGS/ML. CRYSTALS GROWN AT ROOM TEMPERATURE., batch method
|
Resolution 0.95 Å
R-free 0.147
|
|
4M4O
Crystal structure of the aptamer minE-lysozyme complex
Deposited 2013-08-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;298 K;0.17M Sodium Acetate, 0.085M Tris-HCl, pH 8.5, 25.5% PEG-4000, 15% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.207
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain E
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain G
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain I
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4M6D
Crystal structure of the aptamer minF-lysozyme complex.
Deposited 2013-08-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein–RNA
Monomer;Protein × 1
PDB declaration: dimeric
|
Chain K
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å
R-free 0.216
|
|
4MR1
X-ray structure of the adduct between hen egg white lysozyme and cis-diamminediiodoplatinum(II)
Deposited 2013-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
YPT cis-diamino(diiodo)platinum × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;298 K;HEWL crystals were grown at 293 K using the hanging drop vapour diffusion method. The reservoir (600 UL) contained 20 mM sodium acetate buffer at pH 4.2 and 1.0 M NaCl; the drop (0.5+0.5 UL) contained hen egg white lysozyme (10 mg mL-1) in the same acetate buffer (5mM) and reservoir solution. Crystals grow in 1 day. After 5 days, HEWL crystals were soaked in a DMSO solution of cis-PtI2(NH3)2. Final concentration of the metal complex in solution was >10 times higher than HEWL, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å
R-free 0.234
|
|
4N0J
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 1.9 A resolution
Deposited 2013-10-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
20–147(128 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2
CL CHLORIDE ION × 1
GOL GLYCEROL × 3
NA SODIUM ION × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.1;293.15 K;6 % PEG 8000, 100 mM, MAGNESIUM CHLORIDE, 50 mM SODIUM CHLORIDE, 100 mM SODIUM CACODYLATE, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.90 Å
R-free 0.210
|
|
4N0J
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 1.9 A resolution
Deposited 2013-10-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
20–147(128 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2
CL CHLORIDE ION × 2
GOL GLYCEROL × 2
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.1;293.15 K;6 % PEG 8000, 100 mM, MAGNESIUM CHLORIDE, 50 mM SODIUM CHLORIDE, 100 mM SODIUM CACODYLATE, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.90 Å
R-free 0.210
|
|
4N1C
Structural evidence for antigen receptor evolution
Deposited 2013-10-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;0.2 M ammonium acetate, 0.1 M BisTris (pH 5.5), 25% PEG3350, vapor diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.70 Å
R-free 0.233
|
|
4N1E
Structural evidence for antigen receptor evolution
Deposited 2013-10-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain I
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å
R-free 0.265
|
|
4N1E
Structural evidence for antigen receptor evolution
Deposited 2013-10-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain J
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å
R-free 0.265
|
|
4N1E
Structural evidence for antigen receptor evolution
Deposited 2013-10-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain K
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å
R-free 0.265
|
|
4N1E
Structural evidence for antigen receptor evolution
Deposited 2013-10-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain L
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å
R-free 0.265
|
|
4N5R
Hen egg-white lysozyme phased using free-electron laser data
Deposited 2013-10-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å
R-free 0.256
|
|
4N8Z
In situ lysozyme crystallized on a MiTeGen micromesh with benzamidine ligand
Deposited 2013-10-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
In situ crystallization on micromesh;pH 4.6;290 K;4% sodium chloride, 100mM sodium acetate pH 4.6, 120mg/ml, In situ crystallization on micromesh, temperature 290K
|
Resolution 1.20 Å
R-free 0.251
|
|
4N9R
X-ray structure of the complex between hen egg white lysozyme and pentacholrocarbonyliridate(III) (1 day)
Deposited 2013-10-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;Crystals of the complex have been obtained by soaking pre-grown HEWL crystals in a satured solution of Ir(Cl)5CO for 1 day, pH 4.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.55 Å
R-free 0.194
|
|
4NEB
Previously de-ionized HEW lysozyme batch crystallized in 0.5 M MnCl2
Deposited 2013-10-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
MN MANGANESE (II) ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 0.5 M MnCl2, pH 4.5, batch crystallization, temperature 293K
|
Resolution 1.48 Å
R-free 0.151
|
|
4NFV
Previously de-ionized HEW lysozyme batch crystallized in 1.1 M MnCl2
Deposited 2013-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MN MANGANESE (II) ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 1.1 M MnCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.63 Å
R-free 0.179
|
|
4NG1
Previously de-ionized HEW lysozyme batch crystallized in 1.9 M CsCl
Deposited 2013-11-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
CS CESIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 1.9 M CsCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.82 Å
R-free 0.190
|
|
4NG8
Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K.
Deposited 2013-11-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
CS CESIUM ION × 7
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Dialyzed lysozyme, no buffer added, 1.9 M CsCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.09 Å
R-free 0.176
|
|
4NGI
Previously de-ionized HEW lysozyme crystallized in 1.0 M RbCl and collected at 125K
Deposited 2013-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
RB RUBIDIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 1.0 M RbCl, 30% (v/v) glycerol, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.215
|
|
4NGJ
Dialyzed HEW lysozyme batch crystallized in 1.0 M RbCl and collected at 100 K
Deposited 2013-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
RB RUBIDIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Dialyzed lysozyme, no buffer added, 1.0 M RbCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.10 Å
R-free 0.173
|
|
4NGK
Previously de-ionized HEW lysozyme batch crystallized in 0.2 M CoCl2
Deposited 2013-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CO COBALT (II) ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 0.2 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.50 Å
R-free 0.159
|
|
4NGL
Previously de-ionized HEW lysozyme batch crystallized in 0.6 M CoCl2
Deposited 2013-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CO COBALT (II) ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 0.6 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.52 Å
R-free 0.163
|
|
4NGO
Previously de-ionized HEW lysozyme batch crystallized in 1.0 M CoCl2
Deposited 2013-11-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
CO COBALT (II) ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 1.0 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.58 Å
R-free 0.176
|
|
4NGV
Previously de-ionized HEW lysozyme batch crystallized in 0.5 M YbCl3
Deposited 2013-11-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:HEW LYSOZYME
|
Not recorded
|
YB YTTERBIUM (III) ION × 3
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 0.5 M YbCl3, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.64 Å
R-free 0.186
|
|
4NGW
Dialyzed HEW lysozyme batch crystallized in 0.5 M YbCl3 and collected at 100 K
Deposited 2013-11-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
YB YTTERBIUM (III) ION × 3
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Dialyzed lysozyme, no buffer added, 0.5 M YbCl3, pH 4.5, Batch crystallization, EVAPORATION, temperature 293K
|
Resolution 1.37 Å
R-free 0.188
|
|
4NGY
Dialyzed HEW lysozyme batch crystallized in 0.75 M YbCl3 and collected at 100 K
Deposited 2013-11-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
YB YTTERBIUM (III) ION × 3
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Dialyzed lysozyme, no buffer added, 0.75 M YbCl3, pH 4.5, EVAPORATION, temperature 293K
|
Resolution 1.35 Å
R-free 0.216
|
|
4NGZ
Previously de-ionized HEW lysozyme crystallized in 0.5 M YbCl3/30% (v/v) glycerol and collected at 125K
Deposited 2013-11-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
YB YTTERBIUM (III) ION × 3
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;293 K;Previously de-ionized lysozyme, no buffer added, 0.5 M YbCl3, 30% (v/v) glycerol , pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.205
|
|
4NHI
Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate
Deposited 2013-11-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;80mg/ml hen egg-white lysozyme, 100mM TrisHCl, 0.4M Mg-Formate(0.2~0.6 M), pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.34 Å
R-free 0.218
|
|
4NHP
X-ray structure of the complex between the hen egg white lysozyme and pentachlorocarbonyliridate (III) (4 days)
Deposited 2013-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 3
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Ir(Cl)5CO, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.42 Å
R-free 0.227
|
|
4NHQ
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (5 days)
Deposited 2013-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 3
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Ir(Cl)5CO for 5 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.92 Å
R-free 0.260
|
|
4NHS
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (9 days)
Deposited 2013-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Ir(Cl)5CO for 9 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å
R-free 0.299
|
|
4NHT
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (6 days)
Deposited 2013-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 5
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Ir(Cl)5CO for 6 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å
R-free 0.228
|
|
4NIJ
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (30 days)
Deposited 2013-11-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
2T8 carbonyl(tetrachloro)oxidoiridium × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Ir(Cl)5CO for 30 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.86 Å
R-free 0.257
|
|
4NSG
Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 1.5418A
Deposited 2013-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 9
NA SODIUM ION × 1
DMS DIMETHYL SULFOXIDE × 4
ACT ACETATE ION × 5
QPT carboplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch;pH 4.7;294 K;20mg HEWL co-crystallised with 1.4mg carboplatin with 75 l DMSO, 462.5 l 0.1M NaAc and 462.5 l 1M NaBr solution., pH 4.7, Batch, temperature 294K
|
Resolution 2.00 Å
R-free 0.271
|
|
4NSH
Carboplatin binding to HEWL in 0.2M NH4SO4, 0.1M NaAc in 25% PEG 4000 at pH 4.6
Deposited 2013-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 3
ACT ACETATE ION × 3
QPT carboplatin × 2
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added with 75 l DMSO. 2 l of this mixed with 2 l resevoir soultion 0.2M NH4SO4, 0.1M NaAc in 25% PEG 4000 at pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.10 Å
R-free 0.262
|
|
4NSI
Carboplatin binding to HEWL in 20% propanol, 20% PEG 4000 at pH5.6
Deposited 2013-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 3
QPT carboplatin × 2
FLC CITRATE ANION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;298 K;20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added along with 75 l DMSO. 2 l of this was mixed with 2 l of resevoir solution 20% PEG 4000 at pH5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å
R-free 0.285
|
|
4NSJ
Carboplatin binding to HEWL in 2M NH4formate, 0.1M HEPES at pH 7.5
Deposited 2013-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 8
FMT FORMIC ACID × 13
NA SODIUM ION × 1
QPT carboplatin × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added with 75 l DMSO. 2 l of this was mixed with 2 l of resevoir solution 2M NH4formate, 0.1M HEPES at pH 7.5 , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å
R-free 0.258
|
|
4NWE
Lysozyme UNDER 30 BAR PRESSURE OF NITROUS OXIDE
Deposited 2013-12-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
N2O NITROUS OXIDE × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.6;300 K;0.1M sodium acetate, 0.6-1.1M NaCl, pH 4.6, BATCH, temperature 300K
|
Resolution 1.58 Å
R-free 0.200
|
|
4NWH
Lysozyme UNDER 30 BAR PRESSURE OF XENON
Deposited 2013-12-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
XE XENON × 2
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH;pH 4.6;300 K;0.1M sodium acetate, 0.6-1.1M NaCl, pH 4.6, BATCH, temperature 300K
|
Resolution 1.65 Å
R-free 0.208
|
|
4NY5
X-ray structure of the adduct formed between hen egg white lysozyme and NAMI-A
Deposited 2013-12-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RU RUTHENIUM ION × 2
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Crystals of the HEWL/NAMI-A adduct suitable for X-ray diffraction studies Have been grown by hanging drop vapor diffusion by mixing 1 L of 20 mg/mL HEWL/NAMI-A complex (protein to metal ratio 1:10) with an equal volume of reservoir solution containing 1.0 M NaCl and 50 mM sodium acetate pH 4.5. These crystals were fished with nylon loops and flash-frozen at 100 K using nitrogen gas, without cryoprotectant. This procedure partly dehydrates the crystals, enhancing in some cases the resolution of X-ray diffraction data, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.85 Å
R-free 0.240
|
|
4O34
Room temperature macromolecular serial crystallography using synchrotron radiation
Deposited 2013-12-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;14.7 % (w/v) NaCl, 22 % (w/v) PEG 8000, 500 mM acetate buffer pH 3, 100 mg/ml lysozyme, batch, temperature 293K
|
Resolution 2.09 Å
R-free 0.230
|
|
4OOO
X-ray structure of the lysozyme derivative of tetrakis(acetato)chlorido diruthenium(II,III) complex
Deposited 2014-02-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
RU0 Tetrakis(acetato)chloridodiruthenium(II,III) × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;Crystals of HEWL in the presence of the diruthernium compound (1:10 ratio) suitable for X-ray diffraction were grown at 293 K using the hanging drop vapour diffusion method, 1.0-1.2 mol L-1 NaCl as a precipitating agent in 0.050 mol L-1 acetate buffer at pH 4.2 and protein concentration 15 mg mL-1. , VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.15 Å
R-free 0.254
|
|
4OOT
X-ray structure of the protein-gold adduct formed upon reaction of Aubipic with hen egg white lysozyme
Deposited 2014-02-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AU GOLD ION × 1
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;crystal of lysozyme have been obtained in the presence of Aubipyc (1:10 protein to metal ratio) via the hanging drop vapor diffusion method. These crystals have been grown using a reservoir solution of 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.244
|
|
4OWA
Carboplatin binding to HEWL under sodium iodide crystallisation conditions
Deposited 2014-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 19
QPT carboplatin × 2
DMS DIMETHYL SULFOXIDE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;20mg HEWL co-crystallised with 1.4mg carboplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaI solution
|
Resolution 1.80 Å
R-free 0.241
|
|
4OWA
Carboplatin binding to HEWL under sodium iodide crystallisation conditions
Deposited 2014-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 13
QPT carboplatin × 1
DMS DIMETHYL SULFOXIDE × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;20mg HEWL co-crystallised with 1.4mg carboplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaI solution
|
Resolution 1.80 Å
R-free 0.241
|
|
4OWB
Cisplatin binding to HEWL under sodium bromide crystallisation conditions
Deposited 2014-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 2
ACT ACETATE ION × 2
NA SODIUM ION × 1
MEB 2-methylprop-1-ene × 1
BR BROMIDE ION × 8
PT PLATINUM (II) ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;20mg HEWL co-crystallised with 1.2mg cisplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaBr solution
|
Resolution 1.69 Å
R-free 0.266
|
|
4OWC
PtI6 binding to HEWL
Deposited 2014-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 8
PT PLATINUM (II) ION × 2
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtI6 (10mM).
|
Resolution 1.62 Å
R-free 0.193
|
|
4OWE
PtCl6 binding to HEWL
Deposited 2014-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 17
PT PLATINUM (II) ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtCl6 (10mM)
|
Resolution 1.41 Å
R-free 0.223
|
|
4OWH
PtBr6 binding to HEWL
Deposited 2014-02-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
6BP HEXABROMOPLATINATE(IV) × 2
BR BROMIDE ION × 2
CL CHLORIDE ION × 9
ACT ACETATE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.7;295 K;HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtBr6 (10mM)
|
Resolution 1.48 Å
R-free 0.223
|
|
4P2E
Acoustic transfer of protein crystals from agar pedestals to micromeshes for high throughput screening of heavy atom derivatives
Deposited 2014-03-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
CU COPPER (II) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;291 K;0.2M sodium acetate pH4.6, 8% sodium chloride
|
Resolution 1.60 Å
R-free 0.194
|
|
4PGJ
Human heavy-chain domain antibody in complex with hen egg-white lysozyme
Deposited 2014-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.4;293 K;Protein at 4.4 mg/mL in 50 mM Tris (pH 7.5) amd 150 mM NaCl. Well solution contained 28% (w/v) PEG1500, 100 mM Na-citrate (pH 5.4). 400 nL of well solution and protein solution were combined.
|
Resolution 2.60 Å
R-free 0.287
|
|
4PGJ
Human heavy-chain domain antibody in complex with hen egg-white lysozyme
Deposited 2014-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.4;293 K;Protein at 4.4 mg/mL in 50 mM Tris (pH 7.5) amd 150 mM NaCl. Well solution contained 28% (w/v) PEG1500, 100 mM Na-citrate (pH 5.4). 400 nL of well solution and protein solution were combined.
|
Resolution 2.60 Å
R-free 0.287
|
|
4PHI
Crystal structure of HEWL with hexatungstotellurate(VI)
Deposited 2014-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TEW 6-tungstotellurate(VI) × 2
NA SODIUM ION × 1
GOL GLYCEROL × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å
R-free 0.200
|
|
4PHI
Crystal structure of HEWL with hexatungstotellurate(VI)
Deposited 2014-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
19–147(129 aa)
Chain B
19–147(129 aa)
Chain C
19–147(129 aa)
Chain D
19–147(129 aa)
|
Not recorded
|
TEW 6-tungstotellurate(VI) × 8
NA SODIUM ION × 6
GOL GLYCEROL × 1
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å
R-free 0.200
|
|
4PHI
Crystal structure of HEWL with hexatungstotellurate(VI)
Deposited 2014-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
TEW 6-tungstotellurate(VI) × 5
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å
R-free 0.200
|
|
4PHI
Crystal structure of HEWL with hexatungstotellurate(VI)
Deposited 2014-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å
R-free 0.200
|
|
4PHI
Crystal structure of HEWL with hexatungstotellurate(VI)
Deposited 2014-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
TEW 6-tungstotellurate(VI) × 1
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å
R-free 0.200
|
|
4PPO
First Crystal Structure for an Oxaliplatin-Protein Complex
Deposited 2014-02-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 7
1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;Crystals of HEWL in the presence of Oxaliplatin (protein to metal drug ratio 1:10, incubation time=24 h) have been grown by hanging drop vapour diffusion method using a reservoir solution of 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.73 Å
R-free 0.235
|
|
4PRQ
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION
Deposited 2014-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2
PG4 TETRAETHYLENE GLYCOL × 1
P6G HEXAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å
R-free 0.222
|
|
4PRQ
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION
Deposited 2014-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 3
PG4 TETRAETHYLENE GLYCOL × 2
PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å
R-free 0.222
|
|
4PRQ
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION
Deposited 2014-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å
R-free 0.222
|
|
4PRQ
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION
Deposited 2014-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å
R-free 0.222
|
|
4PRU
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution
Deposited 2014-03-06
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;18 % PEG 8000
100 mM MAGNESIUM CHLORIDE,
50 mM SODIUM CHLORIDE,
50 mM SODIUM CACODYLATE PH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15 K
|
Resolution 2.20 Å
R-free 0.235
|
|
4PRU
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution
Deposited 2014-03-06
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.3;293.15 K;18 % PEG 8000
100 mM MAGNESIUM CHLORIDE,
50 mM SODIUM CHLORIDE,
50 mM SODIUM CACODYLATE PH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15 K
|
Resolution 2.20 Å
R-free 0.235
|
|
4QEQ
High resolution structure of egg white lysozyme
Deposited 2014-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.9;293 K;9% w/v sodium chloride, 0.1 M sodium acetate, pH 4.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.38 Å
R-free 0.182
|
|
4QGZ
X-ray structure of the adduct formed between hen egg white lysozyme and trans-dimethylamine methylamine dichlorido platinum(II)
Deposited 2014-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
I83 bis(chloranyl)-(dimethylamino)-(methylamino)platinum × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.51 Å
R-free 0.259
|
|
4QY9
X-ray structure of the adduct between hen egg white lysozyme and Auoxo3, a cytotoxic gold(III) compound
Deposited 2014-07-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NO3 NITRATE ION × 4
EDO 1,2-ETHANEDIOL × 2
NA SODIUM ION × 1
AU GOLD ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1 M sodium chloride, 0.05 M sodium acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.05 Å
R-free 0.289
|
|
4R0F
Structure of Lysozyme Dimer at 318K
Deposited 2014-07-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;Protein Solution: 40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl, Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.94 Å
R-free 0.239
|
|
4R0F
Structure of Lysozyme Dimer at 318K
Deposited 2014-07-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;318 K;Protein Solution: 40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl, Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.94 Å
R-free 0.239
|
|
4R6C
X-ray diffraction in temporally and spatially resolved biomolecular science: the X-ray crystal structure of hen egg white lysozyme cocrystallized with Ta6Br12 and then a crystal soaked in K2PtBr6
Deposited 2014-08-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TBR HEXATANTALUM DODECABROMIDE × 2
6BP HEXABROMOPLATINATE(IV) × 2
BR BROMIDE ION × 1
CL CHLORIDE ION × 12
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch;pH 4.5;293 K;NaCl; Ta6Br12 2mM. A crystal was soaked in K2PtBr6 10mM., pH 4.5, Batch, temperature 293K
|
Resolution 1.70 Å
R-free 0.230
|
|
4RDS
Lysozyme crystallized with red food coloring dye
Deposited 2014-09-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NA SODIUM ION × 3
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;1.2M NaCl, 25% Ethylene Glycol, 50mM NaOAc(pH 4.5), schilling Red Food coloring dye., VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.23 Å
R-free 0.173
|
|
4RLM
Hen egg-white lysozyme solved from serial crystallography at a synchrotron source, data processed with CrystFEL
Deposited 2014-10-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;293 K;20% (w/v) NaCl, 6% (w/v) PEG6000, 0.5 M NaCl, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.243
|
|
4RLN
Hen egg-white lysozyme solved from serial crystallography at a synchrotron source, data processed with nXDS
Deposited 2014-10-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.5;293 K;20% (w/v) NaCl, 6% (w/v) PEG6000, 0.5 M NaCl, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.17 Å
R-free 0.238
|
|
4RW1
Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: original beam
Deposited 2014-12-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), batch, temperature 293K
|
Resolution 1.90 Å
R-free 0.256
|
|
4RW2
Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam
Deposited 2014-12-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
batch;pH 3;293 K;After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4)
, batch, temperature 293K
|
Resolution 2.30 Å
R-free 0.251
|
|
4TSA
Structure of a lysozyme FAb complex
Deposited 2014-06-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: Trimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PCTP 100mM pH 6.5, 25% Peg10k
|
Resolution 2.27 Å
R-free 0.310
|
|
4TSB
Structure of a lysozyme antibody complex
Deposited 2014-06-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: Trimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100mM PCPT pH 5.5, 200mM MgCl2, 22 % w/v PEG 3350
|
Resolution 1.95 Å
R-free 0.227
|
|
4TSC
Structure of a lysozyme antibody complex
Deposited 2014-06-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: Trimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100mM PCTP pH 8.5, 25% w/v Peg3350 Magnesium Chloride 200mM
|
Resolution 1.92 Å
R-free 0.232
|
|
4TTD
Structure of a lysozyme antibody complex
Deposited 2014-06-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
19–147(129 aa)
Fragment:Residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100mM PCTP pH 4.5, 25% w/v Peg3350, ethanol 5%
|
Resolution 2.15 Å
R-free 0.279
|
|
4TTD
Structure of a lysozyme antibody complex
Deposited 2014-06-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain B
19–147(129 aa)
Fragment:Residues 19-147
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100mM PCTP pH 4.5, 25% w/v Peg3350, ethanol 5%
|
Resolution 2.15 Å
R-free 0.279
|
|
4TUN
Crystal structure of Chicken egg white lysozyme adduct with Organophosphorus pesticide Monochrotophos
Deposited 2014-06-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
MVH methyl [4-(methylamino)-4-oxidanylidene-but-2-en-2-yl] hydrogen phosphate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;289 K;Sodium Acetate, Sodium Chloride
|
Resolution 1.93 Å
R-free 0.229
|
|
4TUN
Crystal structure of Chicken egg white lysozyme adduct with Organophosphorus pesticide Monochrotophos
Deposited 2014-06-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
MVH methyl [4-(methylamino)-4-oxidanylidene-but-2-en-2-yl] hydrogen phosphate × 1
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;289 K;Sodium Acetate, Sodium Chloride
|
Resolution 1.93 Å
R-free 0.229
|
|
4TWS
Gadolinium Derivative of Tetragonal Hen Egg-White Lysozyme at 1.45 A Resolution
Deposited 2014-07-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
GD GADOLINIUM ATOM × 3
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 3
CL CHLORIDE ION × 13
NA SODIUM ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;294 K;Tetragonal crystals were grown by the vapour-diffusion technique using the hanging-drop method, with 0.7-1.0 M sodium chloride and 50 mM sodium acetate buffer at pH 4.5. Derivative crystals containing gadolinium were obtained using concentrations of Gd-HPDO3A in the range 10-100 mM.
|
Resolution 1.45 Å
R-free 0.161
|
|
4U3X
Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme
Deposited 2014-07-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;300 mM sodium citrate, 16% PEG 3350
|
Resolution 2.26 Å
R-free 0.248
|
|
4U3X
Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme
Deposited 2014-07-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;300 mM sodium citrate, 16% PEG 3350
|
Resolution 2.26 Å
R-free 0.248
|
|
4UWN
Lysozyme soaked with a ruthenium based CORM with a methione oxide ligand (complex 6b)
Deposited 2014-08-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
RU RUTHENIUM ION × 4
CMO CARBON MONOXIDE × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.67 Å
R-free 0.212
|
|
4UWU
Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 7)
Deposited 2014-08-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
FMT FORMIC ACID × 1
CMO CARBON MONOXIDE × 3
RU RUTHENIUM ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.78 Å
R-free 0.195
|
|
4UWV
Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 8)
Deposited 2014-08-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
RU RUTHENIUM ION × 3
CMO CARBON MONOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.77 Å
R-free 0.222
|
|
4W94
Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2
Deposited 2014-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMF DIMETHYLFORMAMIDE × 1
CL CHLORIDE ION × 9
NA SODIUM ION × 1
RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 3
RU RUTHENIUM ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;NaCl, sodium acetate
|
Resolution 1.55 Å
R-free 0.222
|
|
4W96
Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution
Deposited 2014-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMF DIMETHYLFORMAMIDE × 1
CL CHLORIDE ION × 8
NA SODIUM ION × 1
RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 1
RU RUTHENIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;NaCl, sodium acetate
|
Resolution 1.50 Å
R-free 0.227
|
|
4WG1
Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL)
Deposited 2014-09-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.70 Å
R-free 0.255
|
|
4WG7
Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a nano focused beam.
Deposited 2014-09-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.70 Å
R-free 0.239
|
|
4WL6
Raster-scanning protein crystallography using micro and nano-focused synchrotron beams
Deposited 2014-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;293 K;50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.85 Å
R-free 0.271
|
|
4WL7
Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a micro focused beam (Conventional resolution cut-off)
Deposited 2014-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.95 Å
R-free 0.264
|
|
4WLD
High pressure protein crystallography of hen egg white lysozyme at 0.1 MPa
Deposited 2014-10-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;sodium chloride
|
Resolution 1.54 Å
R-free 0.179
|
|
4WLT
High pressure protein crystallography of hen egg white lysozyme at 190 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.197
|
|
4WLX
High pressure protein crystallography of hen egg white lysozyme at 280 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.193
|
|
4WLY
High pressure protein crystallography of hen egg white lysozyme at 380 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.62 Å
R-free 0.194
|
|
4WM1
High pressure protein crystallography of hen egg white lysozyme at 500 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.208
|
|
4WM2
High pressure protein crystallography of hen egg white lysozyme at 600 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.201
|
|
4WM3
High pressure protein crystallography of hen egg white lysozyme at 710 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.55 Å
R-free 0.259
|
|
4WM4
High pressure protein crystallography of hen egg white lysozyme at 800 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.224
|
|
4WM5
High pressure protein crystallography of hen egg white lysozyme at 890 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.60 Å
R-free 0.217
|
|
4WM6
High pressure protein crystallography of hen egg white lysozyme at 950 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.85 Å
R-free 0.284
|
|
4WM6
High pressure protein crystallography of hen egg white lysozyme at 950 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.85 Å
R-free 0.284
|
|
4WM6
High pressure protein crystallography of hen egg white lysozyme at 950 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.85 Å
R-free 0.284
|
|
4WM6
High pressure protein crystallography of hen egg white lysozyme at 950 MPa
Deposited 2014-10-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.85 Å
R-free 0.284
|
|
4WMG
Structure of hen egg-white lysozyme from a microfludic harvesting device using synchrotron radiation (2.5A)
Deposited 2014-10-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;294 K;15% sodium chloride, 6% poly-ethylene glycol 8000 and 0.5M sodium acetate
|
Resolution 2.50 Å
R-free 0.306
|
|
4WO6
Lysozyme Pre-surface acoustic wave
Deposited 2014-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.6;277 K;1 M NaCl, 25% Glycerol, 0.1 M Na Acetate, pH 4.6, gentle agitation
|
Resolution 2.00 Å
R-free 0.209
|
|
4WO9
Lysozyme Post-Surface Acoustic Waves
Deposited 2014-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.6;277 K;1M NaCl, 25% Glycerol, 0.1 M Na Acetate, pH 4.6, gentle agitation
|
Resolution 1.99 Å
R-free 0.202
|
|
4WOA
Lysozyme Multiple Crystals After Surface Acoustic Wave Alignment
Deposited 2014-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.6;277 K;1 M NaCl, 0.1 M Na Acetate, 25% Glycerol, gentle agitation
|
Resolution 1.80 Å
R-free 0.228
|
|
4X3B
A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
Deposited 2014-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: Monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4;293 K;0.1 M Sodium Acetate pH 4.0, 8% (w/v) NaCl
|
Resolution 2.10 Å
R-free 0.229
|
|
4XAD
Crystal structure of hen egg white lysozyme in complex with Galf-GlcNAc
Deposited 2014-12-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;100 mM NaOAc, 1.5 M NaCl
|
Resolution 1.25 Å
R-free 0.168
|
|
4XEN
High pressure protein crystallography of hen egg white lysozyme in complex with Tetra-N-acetylchitotetraose at 920 MPa
Deposited 2014-12-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.55 Å
R-free 0.210
|
|
4XJB
X-ray structure of Lysozyme1
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1 M NaCl, 50-100 mM CH3COONa, pH4.5, and 15-30% PEG 400
|
Resolution 1.80 Å
R-free 0.213
|
|
4XJD
X-ray structure of Lysozyme2
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1 M NaCl, 50-100 mM CH3COONa, pH4.5, and 15-30% PEG 400
|
Resolution 1.80 Å
R-free 0.267
|
|
4XJF
X-ray structure of Lysozyme B1
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;1M NaBr, 50-100 mM CH3COONa, pH4.5, 15-30% pEG 400
|
Resolution 1.80 Å
R-free 0.207
|
|
4XJG
X-ray structure of Lysozyme B2
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;1M NaBr, 50-100 mM CH3COONa, pH4.5, 15-30% pEG 400
|
Resolution 1.80 Å
R-free 0.243
|
|
4XJH
X-ray structure of LysozymeS1
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1M NaCl, 50-100 mM CH3COONa, pH4.5, 15-30% PEG 400
|
Resolution 2.00 Å
R-free 0.204
|
|
4XJI
X-ray structure of LysozymeS2
Deposited 2015-01-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1M NaCl, 50-100 mM CH3COONa, pH4.5, 15-30% PEG 400
|
Resolution 2.00 Å
R-free 0.210
|
|
4XN6
Crystal structure at room temperature of hen-egg lysozyme in complex with benzamidine
Deposited 2015-01-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: Monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BEN BENZAMIDINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;298 K;NaOAc 100mM
,4% (w/v) NaCl
|
Resolution 1.35 Å
R-free 0.166
|
|
4XYY
Hen Egg-White Lysozyme (HEWL) complexed with Zr(IV)-substituted Keggin-type polyoxometalate
Deposited 2015-02-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ZKG ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN × 1
DMS DIMETHYL SULFOXIDE × 1
EDN ETHANE-1,2-DIAMINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;289 K;0.1 M Sodium HEPES pH 7.5, 2.0 M Ammonium sulphate
|
Resolution 1.38 Å
R-free 0.184
|
|
4YEM
Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 0.9163A - new refinement
Deposited 2015-02-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 3
BR BROMIDE ION × 16
NA SODIUM ION × 1
DMS DIMETHYL SULFOXIDE × 2
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;297 K;co-crystallizing 20 mg ml HEWL with 1.4 mg carboplatin in 75 ml DMSO, 462.5 ml 0.1 M sodium acetate, 462.5 ml 1 M NaBr solution.
|
Resolution 1.47 Å
R-free 0.156
|
|
4YEN
Room temperature X-ray diffraction studies of cisplatin binding to HEWL in DMSO media after 14 months of crystal storage - new refinement
Deposited 2015-02-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 2
CL CHLORIDE ION × 5
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;295 K;HEWL co-crystallized with cisplatin with 5% DMSO media in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7
|
Resolution 2.00 Å
R-free 0.179
|
|
4YEO
Triclinic HEWL co-crystallised with cisplatin, studied at a data collection temperature of 150K - new refinement
Deposited 2015-02-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
CPT Cisplatin × 1
PT PLATINUM (II) ION × 4
EDO 1,2-ETHANEDIOL × 1
DMS DIMETHYL SULFOXIDE × 2
NO3 NITRATE ION × 7
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.7;294 K;40mg HEWL co-crystallised with 2.6mg cisplatin, with the platinum compounds being in a 3-fold molar excess to the protein. 462.5 ul of a 0.02M NaAc solution along with 462.5 ul of a 0.5M NaNo3 solution was used with 75 ul DMSO added
|
Resolution 0.98 Å
R-free 0.131
|
|
4YM8
Crystal structure of hen egg-white lysozyme
Deposited 2015-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.10 Å
R-free 0.179
|
|
4YOP
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Deposited 2015-03-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;sodium chloride, PEG 6000
|
Resolution 2.10 Å
R-free 0.191
|
|
4Z3M
X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Complex with S,O Bidentate Ligands (9b)
Deposited 2015-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
4KV 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol × 1
DMS DIMETHYL SULFOXIDE × 1
NO3 NITRATE ION × 3
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;20% ethylene glycol, 0.1 M sodium acetate pH 4.5, 0.6 M sodium nitrate
|
Resolution 2.15 Å
R-free 0.233
|
|
4Z41
X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Compound with a S,O Bidentate Ligand (9a=Chloro-(1-(3'-hydroxy)-3-(methylthio)-3-thioxo-prop-1-en-1-olate-O,S)-(dimethylsulfoxide-S)-platinum(II))
Deposited 2015-04-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
4KV 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol × 1
DMS DIMETHYL SULFOXIDE × 1
NO3 NITRATE ION × 6
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;20 % ethylene glycol, 0.1 M sodium acetate pH 4.5, 0.6 M sodium nitrate
|
Resolution 1.89 Å
R-free 0.219
|
|
4Z46
X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin
Deposited 2015-04-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 9
NA SODIUM ION × 2
1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1
CPT Cisplatin × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.6 M sodium nitrate, 0.1 M sodium acetate pH 4.4, 20 %ethylene glycol
|
Resolution 1.85 Å
R-free 0.218
|
|
4Z98
Crystal Structure of Hen Egg White Lysozyme using Serial X-ray Diffraction Data Collection
Deposited 2015-04-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3.5;277 K;20% w/v NaCl, 8% w/v PEG 8000, 0.5 M Sodium acetate
|
Resolution 1.55 Å
R-free 0.246
|
|
4ZEE
X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin (preparation 2)
Deposited 2015-04-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 9
EDO 1,2-ETHANEDIOL × 2
1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1
CPT Cisplatin × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;Best crystals grow within 2-10 days from the following conditions: 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol.
|
Resolution 1.95 Å
R-free 0.230
|
|
4ZFP
A new crystal structure for the adduct formed in the reaction between AuSac2, a cytotoxic homoleptic gold(I) compound with the saccharinate ligand, and the model protein hen egg white lysozyme
Deposited 2015-04-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NO3 NITRATE ION × 6
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;Best crystals grow within 2 days from the following conditions: 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol.
|
Resolution 1.96 Å
R-free 0.235
|
|
4ZIX
Structure of HEWL using Serial Femtosecond Crystallography of Soluble Proteins in Lipidic Cubic Phase
Deposited 2015-04-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;293 K;Lysozyme powder from chicken egg white was dissolved in 0.02 M Sodium acetate pH 4.6 buffer to a final concentration of 50 mg/mL. Crystallization was initiated by injecting 20 uL of lysozyme solution (50 mg/mL) into 1 mL of precipitant solution (20 %(w/v) NaCl, 6 %(v/v) PEG 6000, 1 M Na acetate pH 3.0) at room temperature.
|
Resolution 1.89 Å
R-free 0.191
|
|
5A3E
2.5A structure of lysozyme determined by MicroED with data from a single crystal
Deposited 2015-05-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
X-ray crystallization conditions
pH 4.5;pH 4.5
|
Resolution 2.50 Å
R-free 0.253
|
|
5AMY
Crystal Structure of Hen egg white lysozyme processed with the CrystalDirect automated mounting and cryo-cooling technology
Deposited 2015-09-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
0.1 M SODIUM ACETATE, 1.25 M NACL, PH=4.6
|
Resolution 1.80 Å
R-free 0.220
|
|
5APC
Hen Egg White Lysozyme illuminated with 0.4THz radiation
Deposited 2015-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;50MM NA ACETATE, PH 4.5 1M NACL 25% ETHYLENE GLYCOL 30-100MG/ML HEWL IN 50MM NA ACETATE, PH 4.5
|
Resolution 1.70 Å
R-free 0.197
|
|
5APD
Hen Egg White Lysozyme not illuminated with 0.4THz radiation
Deposited 2015-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;50MM NA ACETATE, PH 4.5 1M NACL 25% ETHYLENE GLYCOL 30-100MG/ML HEWL IN 50MM NA ACETATE, PH 4.5
|
Resolution 1.70 Å
R-free 0.196
|
|
5APE
Hen Egg White Lysozyme reference dataset odd frames
Deposited 2015-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;30-100MG/ML HEWL IN 50MM NAAC PH 4.5 RESERVOIR: 50MM NAAC PH 4.5 1M NACL 25% ETHYLENE GLYCOL
|
Resolution 1.70 Å
R-free 0.192
|
|
5APF
Hen Egg White Lysozyme reference dataset even frames
Deposited 2015-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;30-100MGML HEWL IN 50MM NAAC PH4.5 RESERVOIR: 50MM NAAC PH4.5, 1M NACL, 25% ETHYLENE GLYCOL
|
Resolution 1.70 Å
R-free 0.193
|
|
5B05
Lysozyme (control experiment)
Deposited 2015-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 4
NA SODIUM ION × 8
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;NaCl, Ethylene glycol
|
Resolution 1.80 Å
R-free 0.187
|
|
5B06
Lysozyme (denatured by NaOD and refolded)
Deposited 2015-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 4
NA SODIUM ION × 8
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;NaCl, ethylene glycol
|
Resolution 1.80 Å
R-free 0.187
|
|
5B07
Lysozyme (denatured by DCl and refolded)
Deposited 2015-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 4
NA SODIUM ION × 8
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;NaCl, ethylene glycol
|
Resolution 1.80 Å
R-free 0.187
|
|
5B1F
Crystal structure of hen egg-white lysozyme
Deposited 2015-12-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;NaCl
|
Resolution 2.30 Å
R-free 0.215
|
|
5B1G
Crystal structure of hen egg-white lysozyme
Deposited 2015-12-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;NaCl
|
Resolution 2.30 Å
R-free 0.211
|
|
5B59
Hen egg-white lysozyme modified with a keto-ABNO.
Deposited 2016-04-28
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
KTO (1~{S},5~{R})-9-oxidanyl-9-azabicyclo[3.3.1]nonan-3-one × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.8M NaCl, 0.05M AcOH
|
Resolution 2.00 Å
R-free 0.248
|
|
5B5J
Hen egg white lysozyme with boron tracedrug UTX-97
Deposited 2016-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
UTX 2-cyano-3-((6-(((2-((2-cyanoethyl)(borocaptate-10B)sulfonio)acetyl)carbamoyl)oxy)hexyl)amino)quinoxaline 1,4-dioxide × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;283 K;0.1 M sodium acetatebuffer (pH4.7), 0.4M NaCl
|
Resolution 1.26 Å
R-free 0.223
|
|
5C6I
Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation
Deposited 2015-06-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
CL CHLORIDE ION × 4
GD GADOLINIUM ATOM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 1.90 Å
R-free 0.222
|
|
5C6J
Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation
Deposited 2015-06-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
CL CHLORIDE ION × 4
GD GADOLINIUM ATOM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å
R-free 0.272
|
|
5C6L
Crystal Structure of Gadolinium derivative of HEWL solved using intense Free-Electron Laser radiation
Deposited 2015-06-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
CL CHLORIDE ION × 4
GD GADOLINIUM ATOM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å
R-free 0.280
|
|
5D5C
In meso in situ serial X-ray crystallography structure of lysozyme at 100 K
Deposited 2015-08-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.70 Å
R-free 0.222
|
|
5D5F
In meso in situ serial X-ray crystallography structure of lysozyme by bromine-SAD at 100 K
Deposited 2015-08-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.50 Å
R-free 0.212
|
|
5DL9
Structure of Tetragonal Lysozyme in complex with Iodine solved by UWO Students
Deposited 2015-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IOD IODIDE ION × 4
EDO 1,2-ETHANEDIOL × 9
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Protein Solution (60 mg/ml protein in 0.1M Na acetate pH 4.6) mixed in a 1:1 ratio with the Well Solution (10% NaCl buffered in 0.1 M Na acetate pH 4.5). Cryoprotected in 10% NaI, 0.1 M Na acetate pH 4.5 25% ethylene glycol
|
Resolution 1.38 Å
R-free 0.184
|
|
5DLA
Structure of Tetragonal Lysozyme solved by UWO Students
Deposited 2015-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
CL CHLORIDE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;Protein Solution (60 mg/ml protein in 0.1M Na acetate pH 4.6) mixed in a 1:1 ratio with the Well Solution (10% NaCl buffered in 0.1 M Na acetate pH 4.5). Cryoprotected in 10% NaCl, 0.1 M Na acetate pH 4.5 25% ethylene glycol
|
Resolution 1.22 Å
R-free 0.164
|
|
5DM9
XFEL structure of hen egg-white lysozyme solved using a droplet injector at SACLA
Deposited 2015-09-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;290 K;PEG 6000, Sodium chloride, Sodium acetate
|
Resolution 2.30 Å
R-free 0.211
|
|
5E4P
X-ray Crystal Structure Analysis of Magnetically Oriented Microcrystals of Lysozyme at 1.8 angstrom Resolution
Deposited 2015-10-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;313 K;PEG4000, Sodium chloride
|
Resolution 1.79 Å
R-free 0.226
|
|
5E9R
X-ray structure of the complex between lysozyme and the compound fac, cis-[RuII(CO)3Cl2(N3-MBI), MBI=N-methyl-benzimidazole
Deposited 2015-10-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
5LN chloranyl-bis(hydroxymethyl)-bis(oxidanyl)ruthenium × 1
CMO CARBON MONOXIDE × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;Hen egg white lysozyme was incubated for 2 h in the presence of Ru-MBI in 1:10 protein to metal compound ratio. The adduct was then crystallized by using the hanging drop vapour diffusion method. Drops of 1 microliter were prepared at room temperature mixing 0.5 microliter of adduct at concentration 15 mg/mL with an equal amount of a reservoir constituted by 1.1 M NaCl, 0.1 M acetate buffer, pH 4.0. Crystals of the adduct grow within 24-48 hours.
|
Resolution 2.25 Å
R-free 0.237
|
|
5EBH
Crystal Structure HEW Lysozyme processed with the CrystalDirect automated mounting and cryo-cooling technology
Deposited 2015-10-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;Crystallization experiments were carried out at the High Throughput Crystallization Laboratory of the EMBL Grenoble Outstation (https://embl.fr/htxlab) using the sitting-drop vapour diffusion method and CrystalDirect plates . Crystallization experiments were set up with 100 nl of sample and 100 nl of crystallization solution on the inner surface of the films within a CrystalDirect plate with a Cartesian PixSys robot (Cartesian Technologies). The crystallization solution was 0.1 M sodium acetate, pH=4.6 and 1.25 M sodium chloride.
|
Resolution 1.20 Å
R-free 0.201
|
|
5F14
Structure of native hen egg-white lysozyme
Deposited 2015-11-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;298 K;10% (w/v) sodium chloride, 0.1M sodium acetate
|
Resolution 1.15 Å
R-free 0.182
|
|
5F16
CTA-modified hen egg-white lysozyme
Deposited 2015-11-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;2M sodium chloride, 12% (w/v) PEG 6000
|
Resolution 1.20 Å
R-free 0.248
|
|
5F81
Acoustic injectors for drop-on-demand serial femtosecond crystallography
Deposited 2015-12-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.6;295 K;Batch crystallization 120 mg/ml dissolved in 0.1M sodium acetate (4.6), crystallized with 6% sodium chloride + 10% v/v glycerol
|
Resolution 2.13 Å
R-free 0.333
|
|
5F9U
X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 20 DEGREES
Deposited 2015-12-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.85 Å
R-free 0.233
|
|
5F9X
X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 55 DEGREES
Deposited 2015-12-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
CPT Cisplatin × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.94 Å
R-free 0.248
|
|
5FCP
X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN AT LONG INCUBATION TIMES
Deposited 2015-12-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 2
CPT Cisplatin × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.55 Å
R-free 0.213
|
|
5FDJ
Hen egg lysozyme at room temperature solved from datasets acquired by ultrasonic acoustic levitation method and processed by CrystFEL
Deposited 2015-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å
R-free 0.220
|
|
5FEK
Hen egg lysozyme at room temperature solved from 3600 diffraction images acquired by ultrasonic acoustic levitation method and processed by CrystFEL
Deposited 2015-12-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å
R-free 0.228
|
|
5FEL
Hen egg lysozyme at room temperature solved from dataset acquired by oscillation method
Deposited 2015-12-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å
R-free 0.199
|
|
5FHW
Hen Egg-White Lysozyme (HEWL) complexed with Hf(IV)-substituted Wells Dawson-type polyoxometalate
Deposited 2015-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
HFW Dawson-type polyoxometalate × 1
K POTASSIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;289 K;25 mg/mL Lysozyme C, 1.45 mM 1:2 Hf-Wells Dawson, 2.0 M sodium chloride, 0.1 M potassium phosphate monobasic, 0.1 M sodium phosphate monobasic monohydrate, 0.1 M MES pH = 6.5
|
Resolution 1.52 Å
R-free 0.189
|
|
5FST
Structure of lysozyme prepared by the 'soak-and-freeze' method under 100 bar of krypton pressure
Deposited 2016-01-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP RESIDUES 19-147
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
KR KRYPTON × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.8;10% (W/V) NACL, 0.1M NA ACETATE PH 4.8 25% (V/V) ETH-GLYCOL
|
Resolution 1.20 Å
R-free 0.134
|
|
5GWB
Hen Egg White Lysozyme native crystals soaked for 2 hours in precipitant solution containing 1 M guanidine hydrochloride and 25% glycerol, before data collection
Deposited 2016-09-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
GAI GUANIDINE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;300 K;Sodium Chloride
|
Resolution 2.00 Å
R-free 0.233
|
|
5HLL
Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO.
Deposited 2016-01-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
PT PLATINUM (II) ION × 2
NH3 AMMONIA × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;295 K;HEWL CO-CRYSTALLIZED WITH CISPLATIN, WITH 5% DMSO MEDIA IN 1 ML, 10% SODIUM CHLORIDE + 1 ML 0.04 M SODIUM ACETATE, PH 4.7, BATCH, TEMPERATURE 295K
|
Resolution 1.70 Å
R-free 0.224
|
|
5HMJ
Re-refinement of 4xan: hen lysozyme with carboplatin in sodium bromide solution
Deposited 2016-01-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 14
NA SODIUM ION × 1
PT PLATINUM (II) ION × 1
ACT ACETATE ION × 1
DMS DIMETHYL SULFOXIDE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;297 K;CO-CRYSTALLIZING 20 MG ML HEWL WITH 1.4 MG CARBOPLATIN IN 75 MicroL DMSO, 462.5 MicroL 0.1 M SODIUM ACETATE, 462.5 MicroL 1 M NABR SOLUTION., PH 4.7, BATCH MODE, TEMPERATURE 297K .
|
Resolution 1.30 Å
R-free 0.215
|
|
5HMV
Re refinement of 4mwk.
Deposited 2016-01-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 3
NO3 NITRATE ION × 7
PT PLATINUM (II) ION × 7
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;294 K;40MG HEWL CO-CRYSTALLISED WITH 2.6MG CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN. 462.5 MicroL OF A 0.02M NAAC SOLUTION ALONG
WITH 462.5 MicroL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 MicroL DMSO ADDED, BATCH, PH 4.7, EVAPORATION, TEMPERATURE 294K
|
Resolution 0.98 Å
R-free 0.147
|
|
5HNC
Synchrotron X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels
Deposited 2016-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.5;313 K;PEG 4000, Sodium chloride
|
Resolution 1.76 Å
R-free 0.190
|
|
5HNL
In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels
Deposited 2016-01-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;313 K;PEG 4000, Sodium chloride
|
Resolution 2.42 Å
R-free 0.188
|
|
5HQ1
Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.
Deposited 2016-01-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 3
NO3 NITRATE ION × 4
PT PLATINUM (II) ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;294 K;CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG
CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN. 462.5 UL OF A 0.02M NAAC SOLUTION ALONG
WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO ADDED, BATCH, TEMPERATURE 294K, PH 4.7, EVAPORATION.
|
Resolution 1.00 Å
R-free 0.197
|
|
5I4W
Exploring the onset of lysozyme denaturation by urea
Deposited 2016-02-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;295 K;sodium chloride, sodium citrate
|
Resolution 1.60 Å
R-free 0.211
|
|
5I4X
Exploring onset of lysozyme denaturation by urea - soak period 2 hours
Deposited 2016-02-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
URE UREA × 7
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;295 K;Sodium chloride, sodium citrate
|
Resolution 1.61 Å
R-free 0.213
|
|
5I4Y
Exploring onset of lysozyme denaturation by urea: soak period 10 hours.
Deposited 2016-02-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
URE UREA × 21
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;295 K;sodium chloride, sodium citrate
|
Resolution 1.61 Å
R-free 0.211
|
|
5I53
Exploring onset of lysozyme denaturation by urea - soak period 7 hours
Deposited 2016-02-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
URE UREA × 12
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;295 K;Sodium chloride, sodium citrate
|
Resolution 1.61 Å
R-free 0.187
|
|
5I54
Exploring onset of lysozyme denaturation by urea - soak period 4 hours
Deposited 2016-02-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
URE UREA × 7
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;295 K;Sodium chloride, sodium citrate
|
Resolution 1.61 Å
R-free 0.199
|
|
5I5Q
Re refinement of 4mwn.
Deposited 2016-02-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
NO3 NITRATE ION × 3
PT PLATINUM (II) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;294 K;CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG
CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN, 462.5 UL OF A 0.02M NAAC SOLUTION ALONG WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO ADDED, BATCH, PH 4.7, EVAPORATION, TEMPERATURE 294K
|
Resolution 1.42 Å
R-free 0.237
|
|
5IDD
Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.
Deposited 2016-02-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
NA SODIUM ION × 2
PT PLATINUM (II) ION × 3
DMS DIMETHYL SULFOXIDE × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;293 K;CRYSTALLIZATION CONDITIONS: 40MG HEWL (2.7MM) CO-CRYSTALLISED WITH
3MG CARBOPLATIN (8.1MM). 462.5 microL OF A 0.02M NAAC SOLUTION ALONG
REMARK 280 WITH 462.5 microL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 microL DMSO.
|
Resolution 1.13 Å
R-free 0.220
|
|
5IEL
Structure of Lysozyme labeled with fluorescein isothiocyanate (FITC) at 1.15 Angstroms resolution
Deposited 2016-02-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
6B9 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;285 K;0.1M HEPES 30% v/v Jeffamine ED-2001 ; 0.2M Magnesium nitrate hexahydrate 20% w/v Polyethylene glycol 3,350
|
Resolution 1.15 Å
R-free 0.176
|
|
5IHG
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme a compound I, a platin(II) compound containing a O, S bidentate ligand
Deposited 2016-02-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
PT PLATINUM (II) ION × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;1.1 M NaCl, 0.1 M sodium acetate pH 4.4. S protein concentration :about 15 mg/ml.
|
Resolution 1.75 Å
R-free 0.203
|
|
5II3
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and compound 3, a platin(II) compound containing a O, S bidentate ligand
Deposited 2016-03-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
6B6 platinum(4+) tetrahydroxide × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;Crystals of hen egg white lysozyme-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg /ml.
|
Resolution 1.78 Å
R-free 0.190
|
|
5ILC
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme a compound 2, a platin(II) compound containing a O, S bidentate ligand
Deposited 2016-03-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 1
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 5
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;Crystals of hen egg white lysozyme (HEWL)-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor-diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg x ml.
|
Resolution 1.75 Å
R-free 0.211
|
|
5ILF
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and compound 4, a platin(II) compound containing a O, S bidentate ligand
Deposited 2016-03-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
PT PLATINUM (II) ION × 1
CL CHLORIDE ION × 4
ACT ACETATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;Crystals of hen egg white lysozyme (HEWL)-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor-diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg / ml.
|
Resolution 1.85 Å
R-free 0.233
|
|
5J7C
A picomolar affinity FN3 domain in complex with hen egg-white lysozyme
Deposited 2016-04-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.8;293 K;10% PEG 6000, 0.1 M Bicine, pH 8.8
|
Resolution 2.54 Å
R-free 0.250
|
|
5J7C
A picomolar affinity FN3 domain in complex with hen egg-white lysozyme
Deposited 2016-04-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.8;293 K;10% PEG 6000, 0.1 M Bicine, pH 8.8
|
Resolution 2.54 Å
R-free 0.250
|
|
5JEN
Crystal structure of the anti-sigma factor RsiV bound to lysozyme
Deposited 2016-04-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 3
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.2 M sodium nitrate, 20% (w/v) PEG 3350.
|
Resolution 2.30 Å
R-free 0.237
|
|
5JEN
Crystal structure of the anti-sigma factor RsiV bound to lysozyme
Deposited 2016-04-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 3
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.2 M sodium nitrate, 20% (w/v) PEG 3350.
|
Resolution 2.30 Å
R-free 0.237
|
|
5K2K
Crystal structure of lysozyme
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.1M Tris:HCl pH8.5, 1.4M Ammonium Tartrate Dibasic
|
Resolution 1.65 Å
R-free 0.236
|
|
5K2N
lysozyme with nano particles
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.1M Tris-HCl pH8.5, 1.4M Ammonium Tartrate Dibasic
|
Resolution 1.40 Å
R-free 0.179
|
|
5K2P
Crystal structure of lysozyme
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.1M Tris-HCl pH8.5, 1.3M Ammonium Tartrate Dibasic
|
Resolution 1.24 Å
R-free 0.173
|
|
5K2Q
Lysozyme with nano particles
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.1M Tris-HCl pH8.5, 1.3M Ammonium Tartrate Dibasic
|
Resolution 1.10 Å
R-free 0.180
|
|
5K2R
Crystal structure of lysozyme
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.1M Tris-HCl pH 8.5, 1.5M Ammonium Sulfate
|
Resolution 1.60 Å
R-free 0.217
|
|
5K2S
Lysozyme with nano particles
Deposited 2016-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2M Sodium Chloride, 0.1M Sodium Citrate-Citric Acid pH5.5, 1.0M Ammonium Phosphate Dibasic
|
Resolution 1.55 Å
R-free 0.185
|
|
5K7O
MicroED structure of lysozyme at 1.8 A resolution
Deposited 2016-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.80 Å
R-free 0.284
|
|
5KJ9
Anticancer activity of Ru- and Os(arene) compounds of a maleimide-functionalized bioactive pyridinecarbothioamide ligand
Deposited 2016-06-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.20 Å
R-free 0.196
|
|
5KKI
1.7-Angstrom in situ Mylar structure of hen egg-white lysozyme (HEWL) at 100 K
Deposited 2016-06-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
ACY ACETIC ACID × 1
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;100 mM NaOAc, 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 1.70 Å
R-free 0.210
|
|
5KKI
1.7-Angstrom in situ Mylar structure of hen egg-white lysozyme (HEWL) at 100 K
Deposited 2016-06-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 10
ACY ACETIC ACID × 2
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;100 mM NaOAc, 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 1.70 Å
R-free 0.210
|
|
5KKJ
2.0-Angstrom In situ Mylar structure of hen egg-white lysozyme (HEWL) at 293 K
Deposited 2016-06-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
ACY ACETIC ACID × 1
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;100 mM NaOAc 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 2.00 Å
R-free 0.200
|
|
5KXK
Hen Egg White Lysozyme at 100K, Data set 1
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
NA SODIUM ION × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.180
|
|
5KXL
Hen Egg White Lysozyme at 100K, Data set 2
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.164
|
|
5KXM
Hen Egg White Lysozyme at 100K, Data set 3
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.180
|
|
5KXN
Hen Egg White Lysozyme at 100K, Data set 4
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.178
|
|
5KXO
Hen Egg White Lysozyme at 278K, Data set 1
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.193
|
|
5KXP
Hen Egg White Lysozyme at 278K, Data set 2
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.197
|
|
5KXR
Hen Egg White Lysozyme at 278K, Data set 3
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.187
|
|
5KXS
Hen Egg White Lysozyme at 278K, Data set 4
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.193
|
|
5KXT
Hen Egg White Lysozyme at 278K, Data set 5
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.206
|
|
5KXW
Hen Egg White Lysozyme at 278K, Data set 6
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.204
|
|
5KXX
Hen Egg White Lysozyme at 278K, Data set 7
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.207
|
|
5KXY
Hen Egg White Lysozyme at 278K, Data set 8
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.210
|
|
5KXZ
Hen Egg White Lysozyme at 278K, Data set 9
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.211
|
|
5KY1
Hen Egg White Lysozyme at 278K, Data set 10
Deposited 2016-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;291 K;CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å
R-free 0.218
|
|
5L3H
Re-refinement of 4dd4; cisplatin coordination chemistry determination at hen egg white lysozyme His15 with standard uncertainties
Deposited 2016-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
PT PLATINUM (II) ION × 5
NH3 AMMONIA × 3
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;295 K;CRYSTALLIZATION CONDITIONS: HEWL CO-CRYSTALLIZED WITH CISPLATIN IN
462.5 microL 0.05 M SODIUM ACETATE AND 462.5 microL 10% SODIUM CHLORIDE
IN 75 microL DMSO MEDIA, PH 4.7, BATCH, TEMPERATURE 295K.
|
Resolution 1.70 Å
R-free 0.248
|
|
5L3I
Re-refinement of 4dd6; cisplatin coordination chemistry determination at hen egg white lysozyme His15
Deposited 2016-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 3
NA SODIUM ION × 1
PT PLATINUM (II) ION × 5
CL CHLORIDE ION × 6
NH3 AMMONIA × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;295 K;HEWL CO-CRYSTALLIZED WITH CISPLATIN IN 462.5 microL 0.05 M SODIUM ACETATE AND 462.5 microL 10% SODIUM CHLORIDE IN 75 microL DMSO, PH 4.7, BATCH, TEMPERATURE 295K.
|
Resolution 1.70 Å
R-free 0.212
|
|
5L9J
Room temperature X-ray diffraction of tetragonal HEWL. First data set (0.31 MGy)
Deposited 2016-06-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;Protein: 40-80 mg/ml of protein in 200mM NaAcetate pH 4.7
Crystallization condition: 200mM NaAcetate pH 4.7, 10% NaCl
|
Resolution 1.50 Å
R-free 0.162
|
|
5LA5
Room temperature X-ray diffraction of tetragonal HEWL. Second data set (0.62 MGy)
Deposited 2016-06-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 1.70 Å
R-free 0.185
|
|
5LA8
Room temperature X-ray diffraction of tetragonal HEWL. Third data set (0.93 MGy)
Deposited 2016-06-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 2.00 Å
R-free 0.200
|
|
5LAF
Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. First data set (0.31 MGy)
Deposited 2016-06-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 1.50 Å
R-free 0.176
|
|
5LAG
Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. Second data set (0.62 MGy)
Deposited 2016-06-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;Protein: 50 mg/ml of HEWL in mQ
Crystallization solution: 200 mM NaAcetate + 10% NaCl
|
Resolution 1.60 Å
R-free 0.173
|
|
5LAN
Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. Third data set (0.93 MGy)
Deposited 2016-06-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;291 K;protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH4.7 + 10% NaCl
|
Resolution 1.65 Å
R-free 0.173
|
|
5LIN
Lysozyme, collected at rotation 1 degree per second
Deposited 2016-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;30% w/v Polyethylene glycol monomethyl ether 5,000,
1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
|
Resolution 1.50 Å
R-free 0.233
|
|
5LIO
Lysozyme, collected at rotation 360 degree per second
Deposited 2016-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;30% w/v Polyethylene glycol monomethyl ether 5,000,
1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
|
Resolution 1.50 Å
R-free 0.249
|
|
5LVG
Hen Egg White Lysozyme co-crystallized with cis-Ru(DMSO)4Cl2
Deposited 2016-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RU RUTHENIUM ION × 1
CL CHLORIDE ION × 4
ACT ACETATE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;1M NaCl, 50 mM sodium acetate
|
Resolution 2.00 Å
R-free 0.233
|
|
5LVH
Hen Egg White Lysozyme co-crystallized with trans-Ru(DMSO)4Cl2
Deposited 2016-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RU RUTHENIUM ION × 1
CL CHLORIDE ION × 8
NA SODIUM ION × 1
ACT ACETATE ION × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.55 Å
R-free 0.210
|
|
5LVI
Hen Egg White Lysozyme co-crystallized with [HIsq][trans-RuCl4(DMSO)(Isq)]
Deposited 2016-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
ACT ACETATE ION × 3
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.70 Å
R-free 0.217
|
|
5LVJ
Hen Egg White Lysozyme co-crystallized with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Deposited 2016-09-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
ACT ACETATE ION × 4
GOL GLYCEROL × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.60 Å
R-free 0.214
|
|
5LXW
Atomic resolution X-ray crystal structure of cisplatin bound to hen egg white lysozyme stored for 5 years on the shelf
Deposited 2016-09-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 5
NA SODIUM ION × 1
PT PLATINUM (II) ION × 3
NH3 AMMONIA × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;295 K;Hen Egg White Lysozyme (49mg, ie 3.2mM), cisplatin (3mg, ie 10mM), 462.5 microlitres of 0.04 M sodium acetate, 462.5 microlitres of 10% sodium chloride, and with 7.5% DMSO (75 microlitres ie 1mM), pH 4.7, batch crystallisation method and room temperature (295K). The crystallisation pot was kept for five years.
|
Resolution 1.00 Å
R-free 0.203
|
|
5LYM
STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMENT AT 1.8 ANGSTROM RESOLUTION AND A COMPARISON OF THE VARIABLE REGIONS IN THE POLYMORPHIC FORMS
Deposited 1995-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
R-free 0.264
|
|
5LYM
STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMENT AT 1.8 ANGSTROM RESOLUTION AND A COMPARISON OF THE VARIABLE REGIONS IN THE POLYMORPHIC FORMS
Deposited 1995-07-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
R-free 0.264
|
|
5LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
5LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
5M1Y
The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this
Deposited 2016-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 2
IOD IODIDE ION × 16
DMS DIMETHYL SULFOXIDE × 3
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;293 K;CRYSTALLIZATION CONDITIONS: 20MG HEWL CO-CRYSTALLISED WITH 1.2MG
CISPLATIN WITH 75UL DMSO, 462.5UL 0.1M NAAC AND 462.5UL 1M NAI SOLUTION
|
Resolution 1.90 Å
R-free 0.262
|
|
5M1Y
The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this
Deposited 2016-10-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 1
IOD IODIDE ION × 10
DMS DIMETHYL SULFOXIDE × 3
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.7;293 K;CRYSTALLIZATION CONDITIONS: 20MG HEWL CO-CRYSTALLISED WITH 1.2MG
CISPLATIN WITH 75UL DMSO, 462.5UL 0.1M NAAC AND 462.5UL 1M NAI SOLUTION
|
Resolution 1.90 Å
R-free 0.262
|
|
5MJJ
Single-shot pink beam serial crystallography: Lysozyme
Deposited 2016-12-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;277 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.75 Å
R-free 0.188
|
|
5MYY
Hen Egg-White Lysozyme (HEWL) cocrystallized in the presence of Cadmium sulphate
Deposited 2017-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CD CADMIUM ION × 10
CL CHLORIDE ION × 10
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;0.1 M Sodium acetate pH 4.8 10-12% NaCl
20-25% Ethylene Glycol
60 mg/ ml HEWL in 0.1 M Sodium acetate pH 4.8
|
Resolution 1.10 Å
R-free 0.143
|
|
5NBJ
DLS Tetragonal - ReHEWL
Deposited 2017-03-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RE RHENIUM × 10
CL CHLORIDE ION × 9
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;10% NaCl, NaOAc 0.04 M
|
Resolution 1.27 Å
R-free 0.197
|
|
5NE0
Room temperature in-situ structure of hen egg-white lysozyme from crystals enclosed between ultrathin silicon nitride membranes
Deposited 2017-03-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;90 ul (50mg/ml H2O) lysozyme solution + 20 ul of the precipitant solution (0.1M NaAc 0.6M NaCl) and 10ul 25% ethylene glycol (in water) were mixed together. 20 microliters from this mixture deposited onto the silicon nitride chip.
|
Resolution 1.57 Å
R-free 0.184
|
|
5NJ1
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and arsenoplatin-1
Deposited 2017-03-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 5
A6R arsenoplatin-1 × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;20% ethylene glycol, 0.1 M sodium acetate at pH 4.5, 0.6 M sodium nitrate. Crystals of the adduct with AP1 were obtained upon two days soaking of pregrown HEWL crystals in a solution containing 5 mM AP1 dissolved in DMSO and added to the crystal mother liquor.
|
Resolution 1.85 Å
R-free 0.242
|
|
5NJM
Lysozyme room-temperature structure determined by serial millisecond crystallography
Deposited 2017-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;19.04% NaCl, 5.44% PEG 8,000, 68mM Na Acetate pH 3.0
|
Resolution 1.50 Å
R-free 0.200
|
|
5NJP
Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 1HEW
Deposited 2017-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;274 K;Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å
R-free 0.201
|
|
5NJQ
Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 4ET8
Deposited 2017-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;274 K;Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å
R-free 0.200
|
|
5NJR
Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 4ET8
Deposited 2017-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;274 K;Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å
R-free 0.198
|
|
5NJS
Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 1HEW
Deposited 2017-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;274 K;Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å
R-free 0.199
|
|
5O4W
Protein structure determination by electron diffraction using a single three-dimensional nanocrystal
Deposited 2017-05-31
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å
R-free 0.350
|
|
5O4W
Protein structure determination by electron diffraction using a single three-dimensional nanocrystal
Deposited 2017-05-31
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å
R-free 0.350
|
|
5O4X
Protein structure determination by electron diffraction using a single three-dimensional nanocrystal
Deposited 2017-05-31
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å
R-free 0.279
|
|
5O4X
Protein structure determination by electron diffraction using a single three-dimensional nanocrystal
Deposited 2017-05-31
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å
R-free 0.279
|
|
5O6Q
High pressure flash cooled hen egg white lysozyme
Deposited 2017-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;291 K;lysozyme was dissolved in 0.02 M sodium acetate pH 4.6 to yield 20 mg/ml and mixed 1:1 with 0.8 M sodium chloride and 0.1 M sodium acetate pH 4.6
|
Resolution 1.45 Å
R-free 0.197
|
|
5OB6
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole
Deposited 2017-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 1
RU2 pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium × 3
RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4. Adduct was prepared by mixing the protein with the metallodrug in a 1:10 molar ratio for 24 h at room temperature before crystallization trials.
|
Resolution 1.88 Å
R-free 0.242
|
|
5OB7
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole (crystal 2)
Deposited 2017-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
9QB chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium × 1
9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 1
RU RUTHENIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4
|
Resolution 2.10 Å
R-free 0.234
|
|
5OB8
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using NaCl)
Deposited 2017-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 2
9QB chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium × 1
RU2 pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.1M NaCl, 0.1 M sodium acetate pH 4.0
|
Resolution 1.85 Å
R-free 0.230
|
|
5OB9
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using ethylene glycol
Deposited 2017-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NO3 NITRATE ION × 5
9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;20% Ethylene gly-col, 0.1 M sodium acetate pH 4.0, 0.6 M sodium nitrate
|
Resolution 2.38 Å
R-free 0.308
|
|
5OCV
A Rare Lysozyme Crystal Form Solved Using High-Redundancy 3D Electron Diffraction Data from Micron-Sized Needle Shaped Crystals
Deposited 2017-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.4
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
pH 3.4
|
Resolution 2.20 Å
R-free 0.270
|
|
5OCV
A Rare Lysozyme Crystal Form Solved Using High-Redundancy 3D Electron Diffraction Data from Micron-Sized Needle Shaped Crystals
Deposited 2017-07-03
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.4
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
pH 3.4
|
Resolution 2.20 Å
R-free 0.270
|
|
5OER
Hen egg-white lysozyme refined against 5000 9 keV diffraction patterns
Deposited 2017-07-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
GD GADOLINIUM ATOM × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;Sodium chloride
|
Resolution 1.90 Å
R-free 0.214
|
|
5OLE
X-ray structure of the adduct formed upon reaction of hen egg white lysozyme with a tetranuclear Pt-thiosemicarbazone compound
Deposited 2017-07-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 6
DMS DIMETHYL SULFOXIDE × 3
PT PLATINUM (II) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.78 Å
R-free 0.238
|
|
5OOV
Designed Ankyrin Repeat Protein (DARPin) ETVD-1 in complex with Lysozyme
Deposited 2017-08-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
Fragment:Lysozyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;298 K;0.2M Na-Tartrate, 14.7% PEG3350
|
Resolution 1.36 Å
R-free 0.179
|
|
5OOY
Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme
Deposited 2017-08-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
Fragment:Lysozyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;298 K;10% PEG3000, 0.1M Imidazole pH=8.0, 0.2M LiSO4
|
Resolution 1.72 Å
R-free 0.224
|
|
5OOY
Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme
Deposited 2017-08-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
19–147(129 aa)
Fragment:Lysozyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;298 K;10% PEG3000, 0.1M Imidazole pH=8.0, 0.2M LiSO4
|
Resolution 1.72 Å
R-free 0.224
|
|
5OP1
Designed Ankyrin Repeat Protein (DARPin) A4 in complex with Lysozyme
Deposited 2017-08-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
Fragment:Lysozyme
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;298 K;0.2 M (NH4)2 Tart, 20 %w/v PEG 3350
|
Resolution 2.28 Å
R-free 0.249
|
|
5T3F
hen egg-white lysozyme soaked with selenourea for 10 min
Deposited 2016-08-25
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
SEY selenourea × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;293 K;25% (w/v) PEG3350 and 50mM citrate buffer pH 4.0.
|
Resolution 1.45 Å
R-free 0.184
|
|
5TK0
Lysozyme structure collected with 3D printed polymer mounts
Deposited 2016-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;5% NaCl 0.1M sodium acetate at pH 4.5
|
Resolution 1.79 Å
R-free 0.291
|
|
5UVJ
Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation
Deposited 2017-02-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;298 K;18 % (w/v) NaCl, 6 % (v/v) PEG 6000, 1 M sodium acetate pH 3.0
|
Resolution 2.05 Å
R-free 0.268
|
|
5V4G
Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct with two binding sites
Deposited 2017-03-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.20 Å
R-free 0.206
|
|
5V4H
Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct formed when ruthenium(II)(cymene)(bromido)2 underwent ligand exchange, resulting in one binding site
Deposited 2017-03-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.22 Å
R-free 0.190
|
|
5V4I
Osmium(II)(cymene)(chlorido)2-lysozyme adduct with one binding site
Deposited 2017-03-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
8WV dichloro[(1,2,3,4,5,6-eta)-3-methyl-6-(propan-2-yl)benzene-1,2,4,5-tetrayl]osmium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.50 Å
R-free 0.278
|
|
5WR9
Crystal structure of hen egg-white lysozyme
Deposited 2016-12-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;285 K;sodium chloride, PEG 6000, pH 3.0
|
Resolution 1.80 Å
R-free 0.184
|
|
5WRA
Crystal structure of hen egg-white lysozyme
Deposited 2016-12-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;299 K;sodium chloride, PEG 6000, pH 3.0
|
Resolution 1.45 Å
R-free 0.196
|
|
5WRB
Crystal structure of hen egg-white lysozyme
Deposited 2016-12-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;290 K;sodium chloride, PEG 6000, pH 3.0
|
Resolution 2.01 Å
R-free 0.202
|
|
5YIN
Hen egg-white lysozyme precipitant-free orthorhombic form
Deposited 2017-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-148
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;298 K;No precipitants, extensive concentration
|
Resolution 1.66 Å
R-free 0.213
|
|
5YKY
Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked with 10 mM Rose Bengal and 10mM H2PtCl6
Deposited 2017-10-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 24
PT PLATINUM (II) ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.7M NaCl, 0.1 M acetate buffer
|
Resolution 1.88 Å
R-free 0.237
|
|
6A10
Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate
Deposited 2018-06-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å
R-free 0.176
|
|
6A10
Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate
Deposited 2018-06-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å
R-free 0.176
|
|
6A10
Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate
Deposited 2018-06-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å
R-free 0.176
|
|
6A4N
HEWL crystals soaked in 2.5M GuHCl for 8 minutes
Deposited 2018-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
GAI GUANIDINE × 5
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.6;300 K;The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride.
|
Resolution 1.75 Å
R-free 0.207
|
|
6A4O
HEWL crystals soaked in 2.5M GuHCl for 20 minutes
Deposited 2018-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GAI GUANIDINE × 6
CL CHLORIDE ION × 3
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride.
|
Resolution 1.75 Å
R-free 0.204
|
|
6A4P
HEWL crystals soaked in 2.5M GuHCl for 40 minutes
Deposited 2018-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GAI GUANIDINE × 10
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1 M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride
|
Resolution 1.76 Å
R-free 0.198
|
|
6A4Q
HEWL crystals soaked in 2.5M GuHCl for 110 minutes
Deposited 2018-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
GAI GUANIDINE × 12
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride.
|
Resolution 1.75 Å
R-free 0.215
|
|
6ABN
Crystal Structure of HEWL at pH 8.6
Deposited 2018-07-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.17 Å
R-free 0.196
|
|
6ABZ
Crystal Structure of HEWL in deionized water
Deposited 2018-07-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PGO S-1,2-PROPANEDIOL × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.70 Å
R-free 0.234
|
|
6AC2
Crystal Structure of HEWL at pH 2.2
Deposited 2018-07-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PGO S-1,2-PROPANEDIOL × 2
CL CHLORIDE ION × 3
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M Sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.23 Å
R-free 0.184
|
|
6AD5
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 24 hours under fibrillation conditions
Deposited 2018-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 2
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.75 Å
R-free 0.180
|
|
6ADF
Structure of HEWL co-crystallised with TEMED
Deposited 2018-07-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 1
PGO S-1,2-PROPANEDIOL × 3
CL CHLORIDE ION × 3
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.08 Å
R-free 0.176
|
|
6AEA
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 5 hours under fibrillation conditions
Deposited 2018-08-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 4
PGO S-1,2-PROPANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;10% PEG 6000 and 2M NaCl
|
Resolution 1.40 Å
R-free 0.198
|
|
6AGN
Structure of HEWL co-crystallised with Cinnamaldehyde
Deposited 2018-08-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 3
NA SODIUM ION × 1
9Y3 (2Z)-3-phenylprop-2-enal × 1
9Y6 (2E)-3-phenylprop-2-enal × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;1.5 M NaCl and 10% Ethanol
|
Resolution 1.08 Å
R-free 0.194
|
|
6AGR
Structure of HEWL co-crystallised with phenylethyl alcohol
Deposited 2018-08-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 3
PEL 2-PHENYL-ETHANOL × 1
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6, 2M NaCl
|
Resolution 1.22 Å
R-free 0.182
|
|
6AHH
Crystal Structure of HEWL in complex with Phenylethyl alcohol (in the aroma form) after 5 hours under fibrillation conditions
Deposited 2018-08-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PGO S-1,2-PROPANEDIOL × 1
CL CHLORIDE ION × 3
PEL 2-PHENYL-ETHANOL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;292 K;2 M NaCl, 10% PEG 6000
|
Resolution 2.10 Å
R-free 0.246
|
|
6AHL
Crystal Structure of HEWL in complex with Cinnamaldehyde (in the aroma form) after 5 hours under fibrillation conditions
Deposited 2018-08-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PGO S-1,2-PROPANEDIOL × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
CIN 4-CARBOXYCINNAMIC ACID × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;292 K;0.1 M sodium acetate pH 4.6, 1.2 M NaCl
|
Resolution 1.80 Å
R-free 0.207
|
|
6APM
Hen egg-white lysozyme (WT), solved with serial millisecond crystallography using synchrotron radiation
Deposited 2017-08-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;298 K;2.5 M NaCl, 6% PEG 6K, 0.15 M sodium acetate (pH 4.5)
|
Resolution 2.05 Å
R-free 0.233
|
|
6B7U
Structure of hen egg-white lysozyme without high-pressure pre-treatment
Deposited 2017-10-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
GOL GLYCEROL × 2
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.7M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.58 Å
R-free 0.210
|
|
6B7V
Structure of hen egg-white lysozyme pre-treated with high-pressure homogenization at 120 MPa
Deposited 2017-10-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
GOL GLYCEROL × 2
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.7M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.48 Å
R-free 0.203
|
|
6B7W
Structure of hen egg-white lysozyme pre-treated with high pressure (600 MPa) under isobaric condition
Deposited 2017-10-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
GOL GLYCEROL × 2
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.9M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.48 Å
R-free 0.187
|
|
6BO1
Mono-adduct formed after 3 days in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Deposited 2017-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
E3D dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Ru(II)(cymene)(1,3-dimethylbenzimidazol-2-ylidene)(chlorido)2 (1.04 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.24 Å
R-free 0.239
|
|
6BO2
Adducts formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Deposited 2017-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
RU RUTHENIUM ION × 1
E3D dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Ru(II)(cymene)(1,3-dimethylbenzimidazol-2-ylidene)(chlorido)2 (1.04 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.48 Å
R-free 0.233
|
|
6BRE
Hen Egg-White Lysozyme cocrystallized with Cadmium sulphate using CuKalpha source.
Deposited 2017-11-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CD CADMIUM ION × 10
CL CHLORIDE ION × 6
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;1.5 M Sodium Chloride, Sodium acetate
|
Resolution 1.86 Å
R-free 0.248
|
|
6CIW
Hen Egg White Lysozyme Cocrystallized with 1,3-Di(2-pyridyl)propane
Deposited 2018-02-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
F44 2,2'-(propane-1,3-diyl)dipyridine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;0.1 M sodium acetate pH 5.0
1M NaCl
|
Resolution 1.42 Å
R-free 0.276
|
|
6D6E
Triclinic lysozyme (295 K) in the presence of 47% xylose
Deposited 2018-04-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Protein: 10 mg/mL
Well: 0.3 M NaNO3
|
Resolution 2.00 Å
R-free 0.187
|
|
6D6F
Triclinic lysozyme cryocooled to 100 K with 47% xylose as cryoprotectant
Deposited 2018-04-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
XYS alpha-D-xylopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Protein: 10 mg/mL
Well: 0.3 M NaNO3
|
Resolution 2.00 Å
R-free 0.200
|
|
6D6G
Triclinic lysozyme (295 K) in the presence of 47% MPD
Deposited 2018-04-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Protein: 10 mg/mL in water
Well: 0.3 M NaNO3
|
Resolution 2.00 Å
R-free 0.182
|
|
6D6H
Triclinic lysozyme cryocooled to 100 K with 47% MPD as cryoprotectant
Deposited 2018-04-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Protein: 10 mg/mL in water
Well: 0.3 M NaNO3
|
Resolution 2.00 Å
R-free 0.193
|
|
6F1L
Lysozyme crystallized in presence of 100 mM sodium phosphate at pH 4.5
Deposited 2017-11-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–145(127 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.5 M Sodium Chloride, 0.1 M Sodium Phosphate. 0.1 M Sodium Acetate
|
Resolution 1.30 Å
R-free 0.180
|
|
6F1M
Lysozyme crystallized in presence of 100 mM sodium phosphate at pH 4.5: low-humidity form
Deposited 2017-11-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.5 M Sodium Chloride, 0.1 M Sodium Phosphate. 0.1 M Sodium Acetate
|
Resolution 1.48 Å
R-free 0.258
|
|
6F1O
Orthorhombic Lysozyme crystallized at 298 K and pH 4.5
Deposited 2017-11-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.2 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 0.96 Å
R-free 0.142
|
|
6F1P
Tetragonal Lysozyme crystallized at 298 K and pH 4.5 with phosphate bound
Deposited 2017-11-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.2 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.12 Å
R-free 0.168
|
|
6F1R
Tetragonal Lysozyme crystallized at 298 K and pH 4.5 with phosphate bound: control experiment
Deposited 2017-11-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.5 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.10 Å
R-free 0.164
|
|
6F2I
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4
Deposited 2017-11-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
7MT Tb-Xo4 × 2
CL CHLORIDE ION × 4
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM Sodium acetate pH 4.6, 0.2 to 0.8 M Chlorure de Sodium.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.20 Å
R-free 0.193
|
|
6F2J
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM sodium sulfate
Deposited 2017-11-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
7MT Tb-Xo4 × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM Sodium acetate pH 4.6, 200mM to 800 mM sodium chloride and 100 mM sodium sulfate.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.30 Å
R-free 0.179
|
|
6F2K
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium phosphate monobasic.
Deposited 2017-11-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM sodium acetate pH 4.6, 200 to 800 sodium chloride, 100 mM Potassium phosphate monobasic.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.50 Å
R-free 0.240
|
|
6F9X
Lysozyme crystallized in presence of 100 mM lithium sulphate at pH 4.5
Deposited 2017-12-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–145(127 aa)
|
Not recorded
|
SO4 SULFATE ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;100 mM Lithium Sulphate, 0.3 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.25 Å
R-free 0.194
|
|
6F9Y
Lysozyme crystallized in presence of 10 mM lithium sulphate at pH 4.5
Deposited 2017-12-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–145(127 aa)
|
Not recorded
|
SO4 SULFATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;10 mM Lithium Sulphate, 0.3 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.20 Å
R-free 0.201
|
|
6F9Z
Lysozyme crystallized in presence of 5 mM ammonium sulphate at pH 4.5
Deposited 2017-12-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–145(127 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 mM Ammonium Sulphate, 0.4 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.20 Å
R-free 0.178
|
|
6FA0
Lysozyme crystallized in presence of 100 mM ammonium sulphate at pH 4.5
Deposited 2017-12-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–145(127 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;100 mM Ammonium Sulphate, 0.4 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.30 Å
R-free 0.188
|
|
6FRO
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide.
Deposited 2018-02-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
IOD IODIDE ION × 5
NA SODIUM ION × 1
7MT Tb-Xo4 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Sodium acetate pH 4.6 100 mM, Sodium Chloride 800 mM, potassium iodide 100 mM.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.42 Å
R-free 0.276
|
|
6FRQ
Structure of tetragonal Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM Potassium sodium tartrate tetrahydrate.
Deposited 2018-02-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM sodium acetate pH 4.6, 800 mM sodium chloride, 100 mM sodium and potassium tartrate, 100 mM Tb-Xo4
|
Resolution 1.69 Å
R-free 0.239
|
|
6FSJ
Crystal structure of TCE-treated Lysozyme
Deposited 2018-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
CIT CITRIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;30 mg/ml Lysozyme in 20 mM Tris pH 7.5, 200 mM NaCl 1:1 with 1.0 M LiCl, 0.1 M Na citrate pH 4.0 20 % w/v PEG 6000
Cryoprotectant: Etylene glycol
30 mM TCE
|
Resolution 1.20 Å
R-free 0.170
|
|
6FTR
Serial Femtosecond Crystallography at Megahertz pulse rates
Deposited 2018-02-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 2
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;293 K;NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
|
Resolution 1.76 Å
R-free 0.173
|
|
6G5C
Interaction of TiO2 nanoparticles (NM-101) with Lysozyme
Deposited 2018-03-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NA SODIUM ION × 5
4TI TITANIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;296 K;20 mg/ml Lys in
TiO2 2.56 mg/ml (JRC NM-101 )
Well/solution
10% (w/v) sodium chloride
0.1 M Sodium acetate buffer pH 5.0
25% (v/v) ethylene glycol
drop 4 microliter Lys + 2 microliter TiO2
|
Resolution 1.80 Å
R-free 0.204
|
|
6G5V
The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (pH 7.0)
Deposited 2018-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 6
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid/NaOH, 0.10 M HEPES pH 7.0, 1% MPEG 2K
|
Resolution 1.96 Å
R-free 0.250
|
|
6G5Y
The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (acid pH)
Deposited 2018-03-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
PT PLATINUM (II) ION × 8
DMS DIMETHYL SULFOXIDE × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;283 K;20% ethylene glicol, 0.10 M sodium acetate pH 4.4, 0.60 M sodium nitrate
|
Resolution 1.49 Å
R-free 0.240
|
|
6G8A
Lysozyme solved by Native SAD from a dataset collected in 5 seconds at 1 A wavelength with JUNGFRAU detector
Deposited 2018-04-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 17
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;5% PEG MME 5000, 2 M NaCl, 50 mM Sodium Acetate pH 4.5, 25%
480 ethylene glycol
|
Resolution 1.14 Å
R-free 0.130
|
|
6GF0
Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip
Deposited 2018-04-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 % NaCl, 6 % PEG 6000, 0.1 M sodium acetate pH 3.0
|
Resolution 2.07 Å
R-free 0.235
|
|
6GNL
Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL)
Deposited 2018-05-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ZKG ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN × 2
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;289 K;1.75 mM HEWL, 0.88 mM 2:2 Zr(IV)-Keggin, 1.5 M NH4Cl, 0.1 M Bis-Tris propane pH = 7.0
|
Resolution 1.23 Å
R-free 0.171
|
|
6GOB
X-ray structure of the adduct formed upon reaction of lysozyme with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain
Deposited 2018-06-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PD PALLADIUM ION × 2
NO3 NITRATE ION × 2
F6Q N,N-pyridylbenzimidazole derivative-Pd complex × 5
SO4 SULFATE ION × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 1.96 Å
R-free 0.231
|
|
6GOH
X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain
Deposited 2018-06-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 2
PT PLATINUM (II) ION × 2
CL CHLORIDE ION × 1
F7T alkylated sulphonate-N,N-pyridylbenzimidazole-Pt complex × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 2.43 Å
R-free 0.273
|
|
6GOI
X-ray structure of the adduct formed upon reaction of lysozyme with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated triphenylphosphonium cation
Deposited 2018-06-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
PD PALLADIUM ION × 2
CL CHLORIDE ION × 2
DMS DIMETHYL SULFOXIDE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;20% ethylene glycol
0.6 M sodium nitrate
0.1 M sodium acetate pH 4.4
|
Resolution 1.99 Å
R-free 0.242
|
|
6GOJ
X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated triphenylphosphonium cation
Deposited 2018-06-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 2
NO3 NITRATE ION × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;293 K;20% ethylene glycol
0.6 M sodium nitrate
0.1 M sodium acetate pH 4.4
|
Resolution 2.25 Å
R-free 0.279
|
|
6H0K
Hen egg-white lysozyme structure determined with data from the EuXFEL, the first MHz free electron laser, 7.47 keV photon energy
Deposited 2018-07-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20% NaCl, 6% PEG 6000
|
Resolution 2.20 Å
R-free 0.240
|
|
6H0L
Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy
Deposited 2018-07-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;20% NaCl, 6% PEG 6000
|
Resolution 1.90 Å
R-free 0.237
|
|
6H3B
Lysozyme: Machining protein microcrystals for structure determination by electron diffraction
Deposited 2018-07-18
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
ELECTRON CRYSTALLOGRAPHY
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.283
|
|
6H79
SSX structure of Lysozyme in flow - metal-kapton microfluidic device
Deposited 2018-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;275 K;3:1 v/v precipitant solution:protein solution
precipitant: 50 mM NaAc pH 3.5, 1M NaCl, 35% ethylene glycol, 20% PEG3350
protein buffer: 50 mM NaAc (pH 3.5)
|
Resolution 2.10 Å
R-free 0.216
|
|
6HT2
STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION
Deposited 2018-10-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.5 M SODIUM CHLORIDE
|
Resolution 2.60 Å
R-free 0.252
|
|
6HT2
STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION
Deposited 2018-10-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.5 M SODIUM CHLORIDE
|
Resolution 2.60 Å
R-free 0.252
|
|
6HU5
STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION
Deposited 2018-10-05
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
1.5 M SODIUM CHLORIDE
|
Resolution 2.80 Å
R-free 0.339
|
|
6HU5
STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION
Deposited 2018-10-05
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
1.5 M SODIUM CHLORIDE
|
Resolution 2.80 Å
R-free 0.339
|
|
6HY4
Co(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Deposited 2018-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
CWO Co(II)-substituted Wells-Dawson × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;289 K;1.40 mM HEWL, 1.0 mM 1:1 Co(II)-Wells-Dawson, 0.50 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.83 Å
R-free 0.214
|
|
6HY6
Ni(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Deposited 2018-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–146(128 aa)
|
Not recorded
|
GXZ Ni(II)-substituted Wells-Dawson × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;289 K;1.40 mM HEWL, 1.0 mM 1:1 Ni(II)-Wells-Dawson, 0.75 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.87 Å
R-free 0.192
|
|
6HY8
Cu(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Deposited 2018-10-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GXW Cu(II)-substituted Wells-Dawson × 1
K POTASSIUM ION × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;289 K;1.75 mM HEWL, 0.8 mM 1:1 Cu(II)-Wells-Dawson, 2.60 M NaCl, 0.1 M Bis-Tris pH = 5.5
|
Resolution 1.22 Å
R-free 0.155
|
|
6HYB
Zr(IV)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Deposited 2018-10-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–146(128 aa)
|
Not recorded
|
ZRW W-Zr-cluster × 1
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;289 K;1.75 mM HEWL, 0.8 mM 1:1 Zr(IV)-Wells-Dawson, 1 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.96 Å
R-free 0.204
|
|
6IG6
Crystal structure of lysozyme delivered in polyacrylamide using x-ray free electron laser
Deposited 2018-09-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.70 Å
R-free 0.217
|
|
6IRJ
Crystal structure of lysozyme by fixed-target serial femtosecond crystallography
Deposited 2018-11-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:UNP residues 19-147
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.65 Å
R-free 0.229
|
|
6JB2
Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme
Deposited 2019-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 2
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;20mM TRIS HCl, 100mM NaCl, 100mM Sodium nitrate, 16% (w/v) PEG 3350
|
Resolution 1.50 Å
R-free 0.165
|
|
6JB5
Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II)
Deposited 2019-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;20mM Tris-HCl pH 8.0, 100mM NaCl, 100mM LiCl, 18 % PEG 3350
|
Resolution 1.55 Å
R-free 0.169
|
|
6JB8
Crystal structure of nanobody D3-L11 in complex with hen egg-white lysozyme
Deposited 2019-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
NA SODIUM ION × 3
GOL GLYCEROL × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;20mM Tris-HCl, 100mM NaCl, 100mM NaNO3, 16% PEG 3350
|
Resolution 1.65 Å
R-free 0.207
|
|
6JXP
Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography
Deposited 2019-04-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.56 Å
R-free 0.200
|
|
6JXQ
Room temperature structure of lysozyme delivered in polyacrylamide by serial millisecond crystallography
Deposited 2019-04-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.76 Å
R-free 0.202
|
|
6JZI
Structure of hen egg-white lysozyme obtained from SFX experiments under atmospheric pressure
Deposited 2019-05-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;28% NaCl, 8% PEG6000, 0.1 M Na-acetate pH 3.0
|
Resolution 2.00 Å
R-free 0.202
|
|
6K5Q
Crystal structure of lysozyme complexed with a bioactive compound from Jatropha gossypiifolia
Deposited 2019-05-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
GOL GLYCEROL × 1
NA SODIUM ION × 1
D2L [(3R,6R)-6-methyloctan-3-yl] 2-[(2S,4S,6R)-2-[(2S)-2-ethylpentyl]-6-methyl-1-(2-oxidanylideneethyl)piperidin-4-yl]ethanesulfonate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;100mM Sodium Acetate pH 4.5, 20% (v/v) Ethylene Glycol
|
Resolution 1.18 Å
R-free 0.194
|
|
6K8G
H/D exchanged Hen egg-white lysozyme
Deposited 2019-06-11
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;NaCl, sodium acetate-d3, acetic acid-d4, 100% D2O
|
Resolution not provided
|
|
6KCB
Room temperature structure of lysozyme delivered in shortening A by serial millisecond crystallography
Deposited 2019-06-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.80 Å
R-free 0.205
|
|
6KCD
Room temperature structure of lysozyme delivered in shortening B by serial millisecond crystallography
Deposited 2019-06-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.50 Å
R-free 0.207
|
|
6KD1
Room temperature structure of lysozyme delivered in agarose by serial millisecond crystallography
Deposited 2019-06-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å
R-free 0.224
|
|
6LAV
MicroED structure of lysozyme at 1.73A determained using crystal lamellas prepared by focused ion beam milling
Deposited 2019-11-13
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 2
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.73 Å
R-free 0.258
|
|
6LL3
Crystal structure of lysozyme by fixed-target serial femtosecond crystallography
Deposited 2019-12-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å
R-free 0.246
|
|
6LT5
Lysozyme protected by alginate gel
Deposited 2020-01-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;277 K;50mM sodium acetate, 1.5M NaCl, pH 4.5
|
Resolution 1.32 Å
R-free 0.180
|
|
6LYT
COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES
Deposited 1992-03-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
|
|
6LYZ
Real-space refinement of the structure of hen egg-white lysozyme
Deposited 1975-02-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
6MQV
Structure of HEWL from LCP injector using synchrotron radiation
Deposited 2018-10-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.8;293 K;1.5M lithium chloride, 0.2M sodium acetate, 40% polyethelyene glycol 6,000
|
Resolution 2.00 Å
R-free 0.249
|
|
6MUZ
Lysozyme, room temperature structure solved by serial 3 degree oscillation crystallography
Deposited 2018-10-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;277 K;50 mg/ml Lysozyme solution (in deionized H2O) was used for crystallization. A mixture of 1 mL of Lysozyme sample and 3 mL of precipitant (20% w/v NaCl, 6% PEG 6K, 0.5 M NaOAc pH 4.0)
|
Resolution 1.84 Å
R-free 0.204
|
|
6MX9
Lysozyme bound to 3-Aminophenol
Deposited 2018-10-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NA SODIUM ION × 2
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 1
K5V 3-aminophenol × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;10uL of 50mM 3-aminophenol was deposited on a cover slip and allowed to dry. A 20 uL pellet of 4% sodium chloride + 5% ethylene glycol + 10% glycerol in 2% agar was deposited on the cover slip. Adjacent to this was positioned lysozyme (10 ul of 30 mg/ml lysozyme in 100 mM sodium acetate pH 4.6). The cover slip was equilibrated over precipitant containing all the crystallization components.
|
Resolution 1.35 Å
R-free 0.186
|
|
6O2H
Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset
Deposited 2019-02-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;295 K;8 microliter drops with 5-15 mg/mL protein, 224-300 mM NaNO3, 50 mM NaOAc pH 4.5, under paraffin oil
|
Resolution 1.21 Å
R-free 0.117
|
|
6P4A
HyHEL10 Fab complexed with hen egg lysozyme carrying two mutations (HEL2x-rigid): R21Q and R73E
Deposited 2019-05-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:R21Q, R73E
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM Bis-Tris propane, pH 7.0, 22% PEG3350
|
Resolution 2.20 Å
R-free 0.292
|
|
6P4B
HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S)
Deposited 2019-05-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Mutation:R21Q, R73E, C76S, C94S
|
CL CHLORIDE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM citrate, pH 4.2, 1 M lithium chloride, 11% w/v PEG3350
|
Resolution 1.90 Å
R-free 0.244
|
|
6P4B
HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S)
Deposited 2019-05-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain D
19–147(129 aa)
|
Mutation:R21Q, R73E, C76S, C94S
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM citrate, pH 4.2, 1 M lithium chloride, 11% w/v PEG3350
|
Resolution 1.90 Å
R-free 0.244
|
|
6P4D
Hen egg lysozyme (HEL) containing three point mutations (HEL3x): R21Q, R73E, and D101R
Deposited 2019-05-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:R21Q, R73E, D101R
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;293 K;12 mg/mL protein, 25 mM Tris, pH 8.0, 150 mM sodium chloride, spontaneous crystal growth
|
Resolution 1.05 Å
R-free 0.145
|
|
6Q88
RT structure of HEWL at 5 kGy
Deposited 2018-12-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PEG DI(HYDROXYETHYL)ETHER × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4;293 K;20 % NaCl
6 % PEG 6000
150 mM ammonium acetate pH 4.0
|
Resolution 1.74 Å
R-free 0.199
|
|
6Q8R
HEW Lysozyme under 2 kbar of argon
Deposited 2018-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 12
NA SODIUM ION × 1
AR ARGON × 8
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;298 K;10 % (W/V) NACL, 0.1 M ACETATE BUFFER PH 4.8. + 25 % (V/V) ETH-GLYCOL
|
Resolution 1.70 Å
R-free 0.188
|
|
6Q8T
Cryo structure of HEWL at 81 kGy
Deposited 2018-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4;293 K;20 % NaCl
6 % PEG 6000
150 mM ammonium acetate pH 4.0
|
Resolution 1.74 Å
R-free 0.242
|
|
6QEA
The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and complex I, a pentacoordinate Pt(II) compound containing 2,9-dimethyl-1,10-phenanthroline, dimethylfumarate, methyl and iodine as ligands
Deposited 2019-01-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 5
J9H pentacoordinate Pt(II) compound × 1
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.4;298 K;20% glycol ethylene
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 1.96 Å
R-free 0.205
|
|
6QNB
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3
Deposited 2019-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.70 Å
R-free 0.211
|
|
6QQ3
The room temperature structure of lysozyme via the acoustic levitation of a droplet
Deposited 2019-02-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 5
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.8;291 K;10 % w/v NaCl, 25 % w/v ethylene glycol, 100 mM Na Acetate pH 4.8
|
Resolution 1.53 Å
R-free 0.201
|
|
6QQC
Cryogenic temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 110 kGy
Deposited 2019-02-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.8;293 K;6-9% NaCl et 0.1M Na Acetate pH 4.8.
|
Resolution 1.42 Å
R-free 0.204
|
|
6QQD
Cryogenic temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 10 MGy
Deposited 2019-02-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.8;293 K;6-9% NaCl, 0.1M Na Acetate pH 4.8
|
Resolution 1.92 Å
R-free 0.216
|
|
6QQE
Room temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 20 kGy
Deposited 2019-02-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.8;293 K;6-9% NaCl, 0.1M Na Acetate pH 4.8
|
Resolution 1.37 Å
R-free 0.188
|
|
6QQF
Room temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 100 kGy
Deposited 2019-02-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.8;293 K;6-9% NaCl, 0.1M Na Acetate pH4.8
|
Resolution 1.95 Å
R-free 0.230
|
|
6QWW
HEWL lysozyme, crystallized from CuCl2 solution
Deposited 2019-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CU COPPER (II) ION × 4
CL CHLORIDE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;CuCl2
|
Resolution 1.35 Å
R-free 0.190
|
|
6QWX
HEWL lysozyme, crystallized from NiCl2 solution
Deposited 2019-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NI NICKEL (II) ION × 2
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;NiCl2
|
Resolution 1.35 Å
R-free 0.193
|
|
6QWY
HEWL lysozyme, crystallized from NaCl solution
Deposited 2019-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 3
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;NaCl
|
Resolution 1.35 Å
R-free 0.199
|
|
6QWZ
HEWL lysozyme, crystallized from KCl solution
Deposited 2019-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;KCl
|
Resolution 1.35 Å
R-free 0.216
|
|
6QX0
HEWL lysozyme, crystallized from LiCl solution
Deposited 2019-03-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;LiCl
|
Resolution 1.35 Å
R-free 0.210
|
|
6QXW
Pink beam serial crystallography: Lysozyme, 5 us exposure, 24344 patterns merged (3 chips)
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.174
|
|
6QXX
Pink beam serial crystallography: Lysozyme, 5 us exposure, 14793 patterns merged
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.180
|
|
6QXY
Pink beam serial crystallography: Lysozyme, 5 us exposure, 8813 patterns merged (1 chip)
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.186
|
|
6QY0
Pink beam serial crystallography: Lysozyme, 5 us exposure, 3000 patterns merged
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.195
|
|
6QY1
Pink beam serial crystallography: Lysozyme, 5 us exposure, 1500 patterns merged
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.206
|
|
6QY2
Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 patterns merged
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å
R-free 0.242
|
|
6QY4
Pink beam serial crystallography: Lysozyme, 1 us exposure, 14793 patterns merged
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.84 Å
R-free 0.183
|
|
6QY5
Pink beam serial crystallography: Lysozyme, 1 us exposure, 4448 patterns merged (1 chip)
Deposited 2019-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;277 K;50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.84 Å
R-free 0.202
|
|
6RNB
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3 50ms diffusion time
Deposited 2019-05-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.70 Å
R-free 0.186
|
|
6RNC
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3 - 100ms diffusion time.
Deposited 2019-05-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.80 Å
R-free 0.192
|
|
6RO3
2Yr-X: Lysozyme with Re Cluster 2 year on shelf
Deposited 2019-05-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 2
RE RHENIUM × 2
KBW Re4(mu3-OH)4(CO)12 × 3
RRE fac-tricarbonyl-triaqua rhenium(I) × 2
BR BROMIDE ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.03 Å
R-free 0.118
|
|
6RO5
1Yr-Y: Lysozyme with Re Cluster 1 year on shelf
Deposited 2019-05-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RE RHENIUM × 7
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
QEB [Re4(mu3-OH)4(CO)12] × 6
RRE fac-tricarbonyl-triaqua rhenium(I) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.68 Å
R-free 0.273
|
|
6RO5
1Yr-Y: Lysozyme with Re Cluster 1 year on shelf
Deposited 2019-05-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
RE RHENIUM × 6
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
RRE fac-tricarbonyl-triaqua rhenium(I) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.7;298 K;Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.68 Å
R-free 0.273
|
|
6RT1
Native tetragonal lysozyme - home source data
Deposited 2019-05-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
CL CHLORIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;100 mM Sodium Acetate pH 4.8, 10% (w/v) NaCl, 25% (v/v) Ethylene Glycol
|
Resolution 1.34 Å
R-free 0.162
|
|
6RT3
Native tetragonal lysozyme - synchrotron data
Deposited 2019-05-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 7
CL CHLORIDE ION × 8
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Sodium Acetate pH 4.8, 10% (w/v) NaCl, 25% (v/v) Ethylene Glycol
|
Resolution 1.05 Å
R-free 0.147
|
|
6RT9
Orthorhombic lysozyme grown with 300g/L sucrose
Deposited 2019-05-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;310 K;0.2M Sodium Acetate pH 4.7, 3% (w/v) NaCl, 300 g/L sucrose
|
Resolution 1.55 Å
R-free 0.228
|
|
6RTA
Tetragonal lysozyme grown with 300g/L Ficoll
Deposited 2019-05-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;310 K;0.2M Sodium Acetate pH 4.7, 3% (w/v) NaCl, 300 g/L Ficoll
|
Resolution 1.80 Å
R-free 0.191
|
|
6RXI
In-flow serial synchrotron crystallography using a 3D-printed microfluidic device (3D-MiXD): Lysozyme
Deposited 2019-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PEG DI(HYDROXYETHYL)ETHER × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;30 mg/mL lysozyme in 100 mM NaAc (pH3.0) rapidly mixed in a 1:1 ratio with precipitant (100 mM NaAc pH 3.0, 20% NaCl, 6% PEG 6000)
|
Resolution 2.00 Å
R-free 0.201
|
|
6S2N
Hen egg-white lysozyme by serial electron diffraction
Deposited 2019-06-21
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.80 Å
R-free 0.316
|
|
6S7N
Crystal structure of orthorhombic lysozyme grown at pH 5.5 with a 26% of solvent content
Deposited 2019-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.2 M sodium chloride, 5mM lithium sulphate, 0.1M sodium acetate
|
Resolution 1.20 Å
R-free 0.174
|
|
6SET
X-ray structure of the gold/lysozyme adduct formed upon 3 days exposure of protein crystals to compound 1
Deposited 2019-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
EDO 1,2-ETHANEDIOL × 1
DMS DIMETHYL SULFOXIDE × 1
CL CHLORIDE ION × 1
AU GOLD ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.90 Å
R-free 0.215
|
|
6SEU
X-ray structure of the gold/lysozyme adduct formed upon 21h exposure of protein crystals to compound 2
Deposited 2019-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NO3 NITRATE ION × 5
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.95 Å
R-free 0.260
|
|
6SEW
X-ray structure of the gold/lysozyme adduct formed upon 24h exposure of protein crystals to compound 2
Deposited 2019-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 7
AU GOLD ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 2.12 Å
R-free 0.294
|
|
6SEX
X-ray structure of the gold/lysozyme adduct formed upon 21h exposure of protein crystals to compound 1
Deposited 2019-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 1
DMS DIMETHYL SULFOXIDE × 1
EDO 1,2-ETHANEDIOL × 1
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.78 Å
R-free 0.224
|
|
6SEZ
X-ray structure of the gold/lysozyme adduct formed upon 24h exposure of protein crystals to compound 1
Deposited 2019-07-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 2
NO3 NITRATE ION × 3
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 2.22 Å
R-free 0.249
|
|
6SIJ
SAD structure of Hen Egg White Lysozyme recovered by continuous rotation data collection and multivariate analysis of Friedel pairs
Deposited 2019-08-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50mM Na acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å
R-free 0.167
|
|
6SIK
SAD structure of Hen Egg White Lysozyme recovered by continuous rotation data collection and univariate analysis
Deposited 2019-08-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50mM Na acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å
R-free 0.163
|
|
6SIL
SAD structure of Hen Egg White Lysozyme recovered by inverse beam geometry data collection and multivariate analysis of Friedel pairs
Deposited 2019-08-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50mM Na Acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å
R-free 0.169
|
|
6SIM
SAD structure of Hen Egg White Lysozyme recovered by inverse beam geometry data collection and univariate analysis
Deposited 2019-08-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50mM Na Acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å
R-free 0.174
|
|
6SR0
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: single colour reference data
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.239
|
|
6SR1
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 35 fs time delay
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.245
|
|
6SR2
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 37 fs time delay
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.294
|
|
6SR3
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 62 fs time delay
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.286
|
|
6SR4
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 112 fs time delay
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.278
|
|
6SR5
X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 102 fs time delay
Deposited 2019-09-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;277 K;20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å
R-free 0.241
|
|
6SYC
Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5
Deposited 2019-09-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
LYE bromophenol blue × 2
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.3 M sodium chloride, 0.1 M imidazole. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M imidazole buffer at pH 6.5.
|
Resolution 1.38 Å
R-free 0.226
|
|
6SYC
Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5
Deposited 2019-09-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
LYE bromophenol blue × 6
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.3 M sodium chloride, 0.1 M imidazole. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M imidazole buffer at pH 6.5.
|
Resolution 1.38 Å
R-free 0.226
|
|
6SYD
Crystal structure of the lysozyme in presence of bromophenol blue at pH 5.5
Deposited 2019-09-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
LYE bromophenol blue × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.1 M sodium acetate, 0.3-0.5 sodium chloride at pH 4.6. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M sodium acetate buffer at pH 5.5.
|
Resolution 1.10 Å
R-free 0.232
|
|
6SYE
Crystal structure of orthorhombic lysozyme in presence of the dye bromophenol blue at pH 7.0
Deposited 2019-09-27
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
LYE bromophenol blue × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Crystals grew in 0.1 M sodium acetate, 0.3 M sodium chloride at pH 4.6 in the presence of 0.1 M Lithium sulfate. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 100 mM Lithium sulfate, 100 mM phosphate buffer at pH 7.0
|
Resolution 0.97 Å
R-free 0.198
|
|
6TVL
Hen Egg White Lysozyme in complex with a "half sandwich"-type Ru(II) coordination compound
Deposited 2020-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
NYN chlorido(1,2-diaminoethane-k2N,N')(1,4,7-trithiacyclononane-k3S,S',S'')ruthenium(II) trifluoromethanesulfonate × 1
TFS trifluoromethanesulfonic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;289 K;NaCl 0.7-1.5 M, 0.1 M Na acetate
|
Resolution 1.40 Å
R-free 0.243
|
|
6TVY
Structure of hen egg white lysozyme crystallized in the presence of Tb-Xo4 crystallophore in the XtalController device
Deposited 2020-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
7MT Tb-Xo4 × 1
TB TERBIUM(III) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;Lysozyme stock solution at 50 mg/ml in 10 mM Sodium Acetate pH 4.5, 40 mM NaCl, incubated in the XtalController instrument. The crystallization was triggered by the addition of 10mM Tb-Xo4 crystallophore.
|
Resolution 1.51 Å
R-free 0.175
|
|
6YBF
RT structure of HEW Lysozyme obtained at 1.13 A resolution from crystal grown in a Kapton microchip.
Deposited 2020-03-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;293.5 K;5% w/v NaCl, 50 mM AcNa pH 4.5
|
Resolution 1.13 Å
R-free 0.160
|
|
6YBI
RT structure of HEW Lysozyme obtained at 1.12 A resolution from crystal grown in a Mylar microchip.
Deposited 2020-03-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;293.5 K;5% w/v NaCl, 50 mM AcNa pH 4.5
|
Resolution 1.12 Å
R-free 0.152
|
|
6YJX
Structure of Hen egg-white lysozyme crystallized with PAS polypeptide
Deposited 2020-04-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;12.5 % (w/v) PA200
0.1 M NaOAc
0.2 M NaCl
|
Resolution 1.20 Å
R-free 0.175
|
|
6YOB
Structure of Lysozyme from COC IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Deposited 2020-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
PG0 2-(2-METHOXYETHOXY)ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.85 Å
R-free 0.239
|
|
6YOC
Structure of Lysozyme from COC IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Deposited 2020-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.86 Å
R-free 0.242
|
|
6YOD
Structure of Lysozyme from SiN IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Deposited 2020-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
PG0 2-(2-METHOXYETHOXY)ETHANOL × 1
AE3 2-(2-ETHOXYETHOXY)ETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.60 Å
R-free 0.211
|
|
6YOE
Structure of Lysozyme from SiN IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Deposited 2020-04-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
AE3 2-(2-ETHOXYETHOXY)ETHANOL × 1
BR BROMIDE ION × 7
NA SODIUM ION × 1
ACY ACETIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.85 Å
R-free 0.285
|
|
6ZS8
X-ray structure of the adduct formed upon treating lysozyme with an aged solution of arsenoplatin-1
Deposited 2020-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
EDO 1,2-ETHANEDIOL × 1
A6R arsenoplatin-1 × 7
DMS DIMETHYL SULFOXIDE × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium nitrate
|
Resolution 2.15 Å
R-free 0.239
|
|
7A70
HEW lysozyme in complex with Ti(OH)4
Deposited 2020-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
R3H tetrakis(oxidanyl)titanium × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.5 M Tris-HCl, 0.7 M NaCl
|
Resolution 1.80 Å
R-free 0.239
|
|
7AC2
Structure of Hen Egg White Lysozyme collected by rotation serial crystallography on a COC membrane at a synchrotron source
Deposited 2020-09-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;dissolved 50 mg/ml in 100 mM Na Acetate pH 3.0. mixed 1:1 (v:v) with 19.04% NaCl, 5.44% PEG 8000, 68 mM Na acetate pH 3.0
|
Resolution 1.51 Å
R-free 0.209
|
|
7AVE
Perdeuterated refolded hen egg-white lysozyme at 100 K
Deposited 2020-11-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
18–147(130 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;291 K;0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 0.98 Å
R-free 0.115
|
|
7AVF
Triclinic hydrogenated hen egg-white lysozyme at 100 K (control)
Deposited 2020-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.5;291 K;sodium nitrate, sodium acetate pH 4.5
|
Resolution 1.00 Å
R-free 0.132
|
|
7AVG
Perdeuterated hen egg-white lysozyme at 100 K
Deposited 2020-11-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.5;291 K;sodium nitrate, sodium acetate pD 4.5
|
Resolution 1.00 Å
R-free 0.134
|
|
7B9J
Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Urea 1:2
Deposited 2020-12-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CHT CHOLINE ION × 2
CL CHLORIDE ION × 13
NA SODIUM ION × 5
URE UREA × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;sodium chloride, sodium acetate, DES: Choline chloride/Urea
|
Resolution 2.20 Å
R-free 0.225
|
|
7BAZ
Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Glycerol 1:2
Deposited 2020-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CHT CHOLINE ION × 2
CL CHLORIDE ION × 13
NA SODIUM ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;sodium chloride, sodium acetate,
DES: Choline chloride/Glycerol
|
Resolution 1.30 Å
R-free 0.164
|
|
7BB1
Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Glutamic acid 2:1
Deposited 2020-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CHT CHOLINE ION × 2
CL CHLORIDE ION × 13
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;sodium chloride, sodium acetate,
DES: Choline chloride/Glutamic acid
|
Resolution 1.30 Å
R-free 0.141
|
|
7BCU
The adduct of NAMI-A with Hen Egg White Lysozyme at 1.5 hours.
Deposited 2020-12-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IMD IMIDAZOLE × 3
DMS DIMETHYL SULFOXIDE × 3
CL CHLORIDE ION × 21
RU RUTHENIUM ION × 3
NA SODIUM ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;289 K;NACL 0.7-1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K
|
Resolution 0.98 Å
R-free 0.144
|
|
7BCX
The adduct of NAMI-A with Hen Egg White Lysozyme at 8 hours.
Deposited 2020-12-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 10
IMD IMIDAZOLE × 3
DMS DIMETHYL SULFOXIDE × 3
RU RUTHENIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;289 K;NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.06 Å
R-free 0.184
|
|
7BD0
The adduct of NAMI-A with Hen Egg White Lysozyme at 26 hours.
Deposited 2020-12-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NA SODIUM ION × 3
IMD IMIDAZOLE × 3
RU RUTHENIUM ION × 3
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;289 K;NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.06 Å
R-free 0.185
|
|
7BDM
The adduct of NAMI-A with Hen Egg White Lysozyme at 98 hours.
Deposited 2020-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 6
RU RUTHENIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;289 K;NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.07 Å
R-free 0.201
|
|
7BDZ
X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (1)
Deposited 2020-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 9
ACT ACETATE ION × 7
EDO 1,2-ETHANEDIOL × 2
RH Rhodium × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.94 Å
R-free 0.217
|
|
7BE0
X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (2)
Deposited 2020-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
ACT ACETATE ION × 7
EDO 1,2-ETHANEDIOL × 2
RH Rhodium × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.62 Å
R-free 0.203
|
|
7BE1
X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (3)
Deposited 2020-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
NO3 NITRATE ION × 11
RH Rhodium × 2
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.40 Å
R-free 0.209
|
|
7BE2
X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (6)
Deposited 2020-12-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 1
GOL GLYCEROL × 1
RH Rhodium × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.01 M HEPES, 2.00 M sodium formate
|
Resolution 1.65 Å
R-free 0.234
|
|
7BEB
Unusual structural features in the adduct of dirhodium tetraacetate with lysozyme (4)
Deposited 2020-12-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
NO3 NITRATE ION × 12
RH Rhodium × 2
EDO 1,2-ETHANEDIOL × 3
ACT ACETATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.32 Å
R-free 0.223
|
|
7BEC
Unusual structural features in the adduct of dirhodium tetraacetate with lysozyme (5)
Deposited 2020-12-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
NO3 NITRATE ION × 5
ACT ACETATE ION × 2
RH Rhodium × 3
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1 M sodium acetate, 20% ethylene glicol, 0.1 M sodium nitrate
|
Resolution 1.74 Å
R-free 0.228
|
|
7BHK
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method.
Deposited 2021-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0.
|
Resolution 1.45 Å
R-free 0.214
|
|
7BHL
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 0.2 s mixing with N-acetyl-D-glucosamine.
Deposited 2021-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å
R-free 0.211
|
|
7BHM
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 0.7 s mixing with N-acetyl-D-glucosamine.
Deposited 2021-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å
R-free 0.220
|
|
7BHN
Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 2 s mixing with N-acetyl-D-glucosamine.
Deposited 2021-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å
R-free 0.194
|
|
7BMO
HEWL in cesium chloride (0.25 M CsCl in protein buffer)
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.90 Å
R-free 0.254
|
|
7BMP
HEWL in cesium chloride (0.25 M CsCl in protein buffer and cryo protectant).
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
EDO 1,2-ETHANEDIOL × 2
CS CESIUM ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.90 Å
R-free 0.195
|
|
7BMQ
HEWL in cesium chloride (1.71 M CsCl in cryo protectant)
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 1
CS CESIUM ION × 15
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.79 Å
R-free 0.257
|
|
7BMR
HEWL in cesium chloride (0.25 M CsCl in protein buffer and 1.71 M CsCl in cryo protectant)
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 2
CS CESIUM ION × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.78 Å
R-free 0.212
|
|
7BMS
HEWL in cesium chloride (1.5 M CsCl in crystallization condition and cryo protectant)
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
CS CESIUM ION × 16
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.5 M cesium chloride
|
Resolution 1.75 Å
R-free 0.209
|
|
7BMT
HEWL in sodium chloride
Deposited 2021-01-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 14
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293.15 K;50 mM sodium acetate pH 4.5, 1.71 M sodium chloride, 15 % (w/v) ethylene glycol
|
Resolution 1.47 Å
R-free 0.169
|
|
7BR5
Lysozyme-sugar complex in H2O
Deposited 2020-03-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;293 K;40mg/mL lysozyme containing 2.1mg/mL (GlcNAc)4, 0.7M NaCl in a buffer of 50mM sodium-acetate (pH4.5)
|
Resolution 1.00 Å
R-free 0.167
|
|
7BVM
Crystal structure of lysozyme delivered in wheat starch
Deposited 2020-04-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 2.00 Å
R-free 0.233
|
|
7BVO
Crystal structure of lysozyme delivered in alginate
Deposited 2020-04-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å
R-free 0.238
|
|
7BYO
Lysozyme structure SS1 from SS mode
Deposited 2020-04-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;291 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.60 Å
R-free 0.194
|
|
7BYP
Lysozyme structure SASE1 from SASE mode
Deposited 2020-04-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;291 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.60 Å
R-free 0.202
|
|
7C09
Structure of lysozyme obtained in SSRF using serial crystallography
Deposited 2020-04-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;NaCl
|
Resolution 2.20 Å
R-free 0.228
|
|
7CDK
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (4500 images from 1st half of data set)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å
R-free 0.227
|
|
7CDM
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (4500 images from 2nd half of data set)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å
R-free 0.215
|
|
7CDN
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (9000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å
R-free 0.211
|
|
7CDO
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 21 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.227
|
|
7CDP
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.216
|
|
7CDQ
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 83 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.226
|
|
7CDR
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 210 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.224
|
|
7CDS
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 420 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.225
|
|
7CDT
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 830 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.219
|
|
7CDU
Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 1700 kGy (3000 images)
Deposited 2020-06-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
MLI MALONATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å
R-free 0.242
|
|
7CJZ
Room temperature structure of lysozyme delivered in lard by serial millisecond crystallography
Deposited 2020-07-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.75 Å
R-free 0.186
|
|
7CQO
Lysozyme grown in LCP soaked with selenourea for 6 min
Deposited 2020-08-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
SEY selenourea × 6
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;297 K;35% (v/v) PEG 400, 0.8 M NaCl, 100 mM sodium citrate/citric acid pH 4.5
|
Resolution 1.71 Å
R-free 0.199
|
|
7CVJ
Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (100 ms)
Deposited 2020-08-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.50 Å
R-free 0.185
|
|
7CVL
Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (500 ms)
Deposited 2020-08-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å
R-free 0.215
|
|
7D01
Lysozyme structure SS2 from SS mode
Deposited 2020-09-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.65 Å
R-free 0.203
|
|
7D02
Lysozyme structure SASE2 from SASE mode
Deposited 2020-09-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.65 Å
R-free 0.205
|
|
7D04
Lysozyme structure SS3 from SS mode
Deposited 2020-09-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.70 Å
R-free 0.248
|
|
7D05
Lysozyme structure SASE3 from SASE mode
Deposited 2020-09-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.70 Å
R-free 0.215
|
|
7DEQ
Lysozyme-sugar complex in D2O
Deposited 2020-11-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;40mg/mL lysozyme containing 2.1mg/mL (GlcNAc)4, 0.7M NaCl in a buffer of 50mM sodium-acetate (pD4.5)
|
Resolution 1.03 Å
R-free 0.148
|
|
7DER
Lysozyme alone in H2O
Deposited 2020-11-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;15mg/mL lysozyme, 0.7M NaCl in a buffer of 50mM sodium-acetate (pH4.5)
|
Resolution 1.03 Å
R-free 0.173
|
|
7DLN
Structure of lysozyme obtained on SSRF using serial synchrotron crystallography
Deposited 2020-11-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;sodium chloride, PEG20000
|
Resolution 2.15 Å
R-free 0.200
|
|
7DTB
Room tempeature structure of lysozyme by fixed-target serial crystallography
Deposited 2021-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.65 Å
R-free 0.209
|
|
7DTF
Room temperature structure of lysozyme by serial millisecond crystallography
Deposited 2021-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å
R-free 0.256
|
|
7E02
Room temperature structure of lysozyme delivered in beef tallow by serial millisecond crystallography
Deposited 2021-01-26
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.55 Å
R-free 0.188
|
|
7F26
Crystal structure of lysozyme
Deposited 2021-06-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.2M citric acid and 0.2M sodium acetate were mixed in a ratio of 1:1 to form a buffer solution, and the buffer solution was mixed with 12%-16% sodium chloride in a ratio of 1:1 to form the mother liquor
|
Resolution 1.70 Å
R-free 0.198
|
|
7FCU
X-ray structure of D2O-solvent lysozyme
Deposited 2021-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NI NICKEL (II) ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 1.42 Å
R-free 0.190
|
|
7FCW
X-ray structure of H2O-solvent lysozyme
Deposited 2021-07-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NI NICKEL (II) ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 1.43 Å
R-free 0.186
|
|
7FG8
H/D exchanged Hen egg-white lysozyme denatured in acidic conditions and refolded in solution
Deposited 2021-07-26
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;NACL, SODIUM ACETATE-D3, ACETIC ACID-D4
|
Resolution not provided
|
|
7FGU
H/D exchanged Hen egg-white lysozyme denatured in basic conditions and refolded in solution
Deposited 2021-07-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;NACL, SODIUM ACETATE-D3, ACETIC ACID-D4, 100% D2O, PH 4.6
|
Resolution not provided
|
|
7FGV
H/D exchanged Hen egg-white lysozyme denatured in heat condition and refolded in solution
Deposited 2021-07-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;NACL, SODIUM ACETATE-D3, ACETIC ACID-D4, 100% D2O, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution not provided
|
|
7JMU
Hen egg-white lysozyme with ionic liquid ethylammonium nitrate
Deposited 2020-08-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;298.15 K;5.7% w/v ethylammonium nitrate
|
Resolution 1.20 Å
R-free 0.183
|
|
7JMU
Hen egg-white lysozyme with ionic liquid ethylammonium nitrate
Deposited 2020-08-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;298.15 K;5.7% w/v ethylammonium nitrate
|
Resolution 1.20 Å
R-free 0.183
|
|
7KH5
Hen Egg White Lysozyme in complex with tetrabromoterephthalic acid
Deposited 2020-10-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
WE4 2,3,5,6-tetrabromobenzene-1,4-dicarboxylic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289.15 K;0.2 M Potassium sulfate, 20% w/v Polyethylene glycol 3,350
|
Resolution 1.29 Å
R-free 0.224
|
|
7KNK
STRUCTURE OF HEN EGG-WHITE LYSOZYME grown with Kitchen recipe
Deposited 2020-11-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;293 K;Rice vinegar, Common salt and Baking powder
|
Resolution 1.45 Å
R-free 0.213
|
|
7L84
Hen Egg White Lysozyme by Native S-SAD at Room Temperature
Deposited 2020-12-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;50 mM citrate buffer (pH 5.2 - 5.8), 20-25% PEG 4000, 20-25% glycerol
|
Resolution 1.70 Å
R-free 0.162
|
|
7LLP
X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 1
Deposited 2021-02-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium Sulfate well solution.
|
Resolution 1.13 Å
R-free 0.155
|
|
7LN8
X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 3
Deposited 2021-02-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.52 Å
R-free 0.200
|
|
7LN9
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 1
Deposited 2021-02-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.13 Å
R-free 0.156
|
|
7LOQ
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 2
Deposited 2021-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.30 Å
R-free 0.169
|
|
7LOR
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 3
Deposited 2021-02-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.52 Å
R-free 0.197
|
|
7LP6
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 2 (merged)
Deposited 2021-02-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.13 Å
R-free 0.156
|
|
7LPL
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 3 (merged)
Deposited 2021-02-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.14 Å
R-free 0.158
|
|
7LPM
X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, crystal 2
Deposited 2021-02-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.10 Å
R-free 0.158
|
|
7LYZ
PROTEIN MODEL BUILDING BY THE USE OF A CONSTRAINED-RESTRAINED LEAST-SQUARES PROCEDURE
Deposited 1977-05-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
|
|
7MRP
MicroED structure of lysozyme from milled crystals at 1.75A
Deposited 2021-05-07
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 4
CL CHLORIDE ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.75 Å
R-free 0.213
|
|
7NJF
Hen egg white lysozyme (HEWL) grown inside HARE serial crystallography chip
Deposited 2021-02-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;33% PEG 4000, 0.5 M NaCl, 50 mM sodium acetate pH 4.5
|
Resolution 1.70 Å
R-free 0.203
|
|
7NKF
Hen egg white lysozyme (HEWL) Grown inside (Not centrifuged) HARE serial crystallography chip.
Deposited 2021-02-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;33% PEG 4000, 0.5 M NaCl, 50 mM sodium acetate pH 4.5
|
Resolution 1.70 Å
R-free 0.212
|
|
7O2O
Lysozyme structure from microfluidic-based in situ data collection
Deposited 2021-03-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;283.15 K;50 mM NaOAc/HOAc, pH 3.5
1 M NaCl
35% EG, 12.5% PEG-3350
|
Resolution 1.83 Å
R-free 0.196
|
|
7OL5
Crystal structure of Lysozyme in complex with Hepes
Deposited 2021-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
IPA ISOPROPYL ALCOHOL × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;0.1M Hepes, 10% isopropanol, 20% PEG 4000
|
Resolution 0.94 Å
R-free 0.163
|
|
7OL6
Crystal structure of Lysozyme in complex with Imidazole
Deposited 2021-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
IMD IMIDAZOLE × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;298 K;0.2M NaCl, 0.1M Imidazole, 10mM NaH2PO4 plus 10% TFE in the reservoir
|
Resolution 1.10 Å
R-free 0.160
|
|
7OL7
Crystal structure of Lysozyme in complex with trifluoroethanol: tetragonal form
Deposited 2021-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
ETF TRIFLUOROETHANOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;0.4M NaCl, 0.1M Sodium Acetate plus 15% TFE in the reservoir
|
Resolution 1.15 Å
R-free 0.174
|
|
7OL8
Crystal structure of Lysozyme in complex with trifluoroethanol: orthorhombic form
Deposited 2021-05-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ETF TRIFLUOROETHANOL × 2
SO4 SULFATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;298 K;0.3M NaCl, 0.1M MES, 10mM NaH2PO4 plus 20% TFE in the reservoir
|
Resolution 1.15 Å
R-free 0.182
|
|
7P6M
Hydrogenated refolded hen egg-white lysozyme
Deposited 2021-07-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
18–147(130 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;291 K;0.05 M sodium acetate pH 4.5, 0.3 M sodium nitrate, micro seeds of G. gallus HEWL
|
Resolution 0.89 Å
R-free 0.153
|
|
7PNH
X-ray structure of the adduct formed upon reaction of Pt(II) complex 2c with lysozyme
Deposited 2021-09-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
NO3 NITRATE ION × 8
PT PLATINUM (II) ION × 2
DMS DIMETHYL SULFOXIDE × 1
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;20% ethylene glycol
0.1 M sodium acetate buffer pH 4.0
0.6 M sodium nitrate
|
Resolution 1.22 Å
R-free 0.174
|
|
7Q05
Crystal structure of TPADO in complex with TPA
Deposited 2021-10-14
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain H
19–147(129 aa)
|
Not recorded
|
FES FE2/S2 (INORGANIC) CLUSTER × 3
SO4 SULFATE ION × 11
UB7 terephthalic acid × 3
FE FE (III) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12.5% MPD,
12.5% PEG 3350,
12.5% PEG 1000,
0.3 M sodium nitrate,
0.3 M sodium phosphate dibasic,
0.3 M ammonium sulfate,
0.1 M buffer Imidazole/MES pH 6.5
|
Resolution 2.08 Å
R-free 0.214
|
|
7Q06
Crystal structure of TPADO in complex with 2-OH-TPA
Deposited 2021-10-14
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain H
19–147(129 aa)
|
Not recorded
|
SO4 SULFATE ION × 6
FES FE2/S2 (INORGANIC) CLUSTER × 3
FE FE (III) ION × 2
8IB 2-Hydroxyterephthalic acid × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;12.5% MPD,
12.5% PEG 3350,
12.5% PEG 1000,
0.3 M sodium nitrate,
0.3 M sodium phosphate dibasic,
0.3 M ammonium sulfate,
0.1 M buffer Imidazole/MES pH 6.5
|
Resolution 1.95 Å
R-free 0.202
|
|
7Q0T
Lysozyme soaked with V(IV)OSO4
Deposited 2021-10-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
ACT ACETATE ION × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 4
V VANADIUM ION × 3
O OXYGEN ATOM × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.34 Å
R-free 0.171
|
|
7Q0U
Lysozyme soaked with V(IV)OSO4 and bipy
Deposited 2021-10-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
0BP 2,2'-bipyridine × 1
V VANADIUM ION × 1
O OXYGEN ATOM × 1
CL CHLORIDE ION × 5
NA SODIUM ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.19 Å
R-free 0.156
|
|
7Q0V
Lysozyme soaked with V(IV)OSO4 and phen
Deposited 2021-10-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
PHN 1,10-PHENANTHROLINE × 1
V VANADIUM ION × 4
O OXYGEN ATOM × 1
NA SODIUM ION × 1
CL CHLORIDE ION × 6
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.12 Å
R-free 0.176
|
|
7QNP
Designed Armadillo repeat protein N(A4)M4C(AII) co-crystallized with hen egg white lysozyme
Deposited 2021-12-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain BBB
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 7
DIO 1,4-DIETHYLENE DIOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;35% (v/v) dioxane, pH undefined
|
Resolution 1.59 Å
R-free 0.218
|
|
7QQ1
X-ray structure of the adduct obtained upon reaction of [cis-Rh2(OCOCH3)2(OCOCF3)2] with HEWL
Deposited 2022-01-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
RH Rhodium × 3
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.10 M HEPES pH 7.5
2.00 M sodium formate
|
Resolution 1.48 Å
R-free 0.224
|
|
7R1Q
X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au2 with lysozyme
Deposited 2022-02-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 1
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate
0.1 M hepes buffer pH 7.5
|
Resolution 1.10 Å
R-free 0.170
|
|
7RXY
Hen egg-white lysozyme with ionic liquid ethylammonium nitrate 5 mol%
Deposited 2021-08-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293.15 K;ionic liquid ethylammonium nitrate 5 mol% (ca. 24wt%) in water
|
Resolution 1.60 Å
R-free 0.207
|
|
7RXY
Hen egg-white lysozyme with ionic liquid ethylammonium nitrate 5 mol%
Deposited 2021-08-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain BBB
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293.15 K;ionic liquid ethylammonium nitrate 5 mol% (ca. 24wt%) in water
|
Resolution 1.60 Å
R-free 0.207
|
|
7RYD
Hen egg-white lysozyme with ionic liquid butylammonium nitrate 1 mol%
Deposited 2021-08-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;298.15 K;butylammonium nitrate 1 mol% (ca. 7wt%) in water
|
Resolution 1.18 Å
R-free 0.230
|
|
7RYD
Hen egg-white lysozyme with ionic liquid butylammonium nitrate 1 mol%
Deposited 2021-08-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain BBB
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;298.15 K;butylammonium nitrate 1 mol% (ca. 7wt%) in water
|
Resolution 1.18 Å
R-free 0.230
|
|
7RYK
Hen egg-white lysozyme with ionic liquid ethanolammonium nitrate 1 mol%
Deposited 2021-08-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;293.15 K;ethanolammonium nitrate 1mol% (ca. 7wt%) in water
|
Resolution 1.76 Å
R-free 0.224
|
|
7RYK
Hen egg-white lysozyme with ionic liquid ethanolammonium nitrate 1 mol%
Deposited 2021-08-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain BBB
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;293.15 K;ethanolammonium nitrate 1mol% (ca. 7wt%) in water
|
Resolution 1.76 Å
R-free 0.224
|
|
7RZ0
Hen egg-white lysozyme with ionic liquid ethanolammonium formate 6.7 mol%
Deposited 2021-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
FMT FORMIC ACID × 5
ETA ETHANOLAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;ethanolammonium formate 6.7 mol% (ca. 30wt%) in water
|
Resolution 1.38 Å
R-free 0.176
|
|
7RZ1
Hen egg-white lysozyme with ionic liquid ethanolammonium formate 14.4 mol%
Deposited 2021-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
FMT FORMIC ACID × 5
ETA ETHANOLAMINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;ethanolammonium formate 14.4mol% (ca. 50wt%) in water
|
Resolution 2.05 Å
R-free 0.243
|
|
7RZ2
Hen egg-white lysozyme with ionic liquid ethanolammonium formate 4 mol%
Deposited 2021-08-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
FMT FORMIC ACID × 5
ETA ETHANOLAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;ethanolammonium formate 4mol% (ca. 20wt%) in water
|
Resolution 1.07 Å
R-free 0.170
|
|
7S27
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.216
|
|
7S28
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.202
|
|
7S29
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.218
|
|
7S2A
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.218
|
|
7S2B
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.213
|
|
7S2C
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.210
|
|
7S2D
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.206
|
|
7S2E
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.212
|
|
7S2F
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.58 Å
R-free 0.244
|
|
7S2G
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.255
|
|
7S2Q
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.214
|
|
7S2U
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.208
|
|
7S2V
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.232
|
|
7S2W
Crystal structure of hen egg white lysozyme
Deposited 2021-09-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.251
|
|
7S30
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.216
|
|
7S31
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.236
|
|
7S32
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.223
|
|
7S33
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.196
|
|
7S34
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.238
|
|
7S35
Crystal structure of hen egg white lysozyme
Deposited 2021-09-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.243
|
|
7S4W
Serial Macromolecular Crystallography at ALBA Synchrotron Light Source - Lysozyme
Deposited 2021-09-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;298 K;0.1 M sodium acetate pH 3.0, 18 % (w/v) sodium chloride, 6% PEG 400
|
Resolution 2.10 Å
R-free 0.232
|
|
7SKW
Ab initio structure of triclinic lysozyme from electron-counted MicroED data
Deposited 2021-10-21
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 0.87 Å
R-free 0.221
|
|
7TUM
Multi-Hit SFX using MHz XFEL sources- first hit
Deposited 2022-02-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;293 K;NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
|
Resolution 3.20 Å
R-free 0.426
|
|
7ULY
MicroED structure of triclinic lysozyme
Deposited 2022-04-05
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 4
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 0.87 Å
R-free 0.220
|
|
7VEI
Neutron structure of D2O-solvent lysozyme
Deposited 2021-09-08
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NI NICKEL (II) ION × 1
CL CHLORIDE ION × 1
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.5;293 K;15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 2.00 Å
R-free 0.215
|
|
7VGO
Hen egg lysozyme
Deposited 2021-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.20 Å
R-free 0.162
|
|
7VGP
Hen egg lysozyme refolded after denaturation at acidic pH
Deposited 2021-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.91 Å
R-free 0.255
|
|
7VGP
Hen egg lysozyme refolded after denaturation at acidic pH
Deposited 2021-09-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.91 Å
R-free 0.255
|
|
7WBD
Crystal structure of lysozyme (multilcrystal diffraction, CrystFEL/XGANDALF)
Deposited 2021-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.15 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å
R-free 0.264
|
|
7WBE
Crystal structure of lysozyme (multilcrystal diffraction, CrystFEL/MOSFLM)
Deposited 2021-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.15 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å
R-free 0.246
|
|
7WBF
Crystal structure of lysozyme
Deposited 2021-12-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.5;293.15 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å
R-free 0.209
|
|
7WKR
Room temperature structure of lysozyme solved by serial synchrotron crystallography
Deposited 2022-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å
R-free 0.198
|
|
7WUC
Room-temperature structure of lysozyme by serial femtosecond crystallography (BITS)
Deposited 2022-02-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;298.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 2.10 Å
R-free 0.249
|
|
7WXS
Lysozyme protected by polyacrylamide gel
Deposited 2022-02-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;50mM sodium acetate, 1.5M NaCl, pH 4.5
|
Resolution 1.25 Å
R-free 0.195
|
|
7Y6A
Crystal structure of Chicken Egg Lysozyme
Deposited 2022-06-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;294 K;0.09 M HEPES-NaOH pH 7.5, 1.26 M sodium citrate tribasic dihydrate, 10% v/v glycerol
|
Resolution 1.50 Å
R-free 0.256
|
|
7YNU
Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Deposited 2022-08-01
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.6;293 K;28% NaCl, 8% PEG6000, 100 mM Na-acetate (pH3.6)
|
Resolution 1.44 Å
R-free 0.223
|
|
7YNV
Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Deposited 2022-08-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.6;293 K;28% NaCl, 8% PEG6000, 100 mM Na-acetate (pH3.6)
|
Resolution 1.39 Å
R-free 0.192
|
|
7YRK
Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex
Deposited 2022-08-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 4
JI6 (6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one × 1
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M of acetic acid-sodium acetate buffer (pH 4.7) including 2-6 % (m/v) of NaCl
|
Resolution 0.92 Å
R-free 0.128
|
|
7Z6J
X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with HEWL
Deposited 2022-03-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NA SODIUM ION × 1
RH Rhodium × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.10 M HEPES pH 7.5
2.00 M sodium formate
|
Resolution 1.53 Å
R-free 0.248
|
|
7ZU6
Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to tetra-vanadate ion (structure 1)
Deposited 2022-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
V4O CYCLO-TETRAMETAVANADATE × 1
VVB bis(oxidanyl)vanadium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate
0.1 M hepes buffer pH 7.5
|
Resolution 1.18 Å
R-free 0.196
|
|
8A9D
Multicrystal room temperature structure of Lysozyme collected using a double multilayer monochromator.
Deposited 2022-06-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 4.5;293 K;1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
|
Resolution 2.10 Å
R-free 0.249
|
|
8A9E
Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
Deposited 2022-06-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4;293 K;10 % NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in 100 mM gadoteridol 30 min. before data collection
|
Resolution 1.67 Å
R-free 0.240
|
|
8A9R
Tetragonal Hen Egg-White (HEW) Lysozyme soaked in reduced resazurin in a glovebox and flash-cooled using a miniature-airlock
Deposited 2022-06-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;100 mM sodium acetate pH 4.6, 1M NaCl
|
Resolution 1.60 Å
R-free 0.230
|
|
8AAZ
High resolution X-ray analysis of ATP lysozyme complex in the presence of 80 mM ATP
Deposited 2022-07-04
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;294 K;10 mM Tris-HCl pH 7.0, 80 mM Na2-ATP
|
Resolution 1.27 Å
R-free 0.171
|
|
8AJ3
X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure A)
Deposited 2022-07-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
H1W pentakis(oxidanyl)vanadium × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
MKO 8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene] × 1
MNW 8,8,8,8-tetrakis($l^{1}-oxidanyl)-2-methyl-3,7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1,5-diene × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;2.0 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.13 Å
R-free 0.249
|
|
8AJ4
X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure A')
Deposited 2022-07-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
MKO 8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene] × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate
0.1 M hepes pH 7.5
|
Resolution 1.22 Å
R-free 0.203
|
|
8AJ5
X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure B)
Deposited 2022-07-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
VO4 VANADATE ION × 3
VVO oxovanadium(2+) × 1
VVB bis(oxidanyl)vanadium × 1
ACT ACETATE ION × 2
NO3 NITRATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium nitrate
|
Resolution 1.31 Å
R-free 0.198
|
|
8B3L
Hen Egg White Lysozyme 2s in situ crystallization
Deposited 2022-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;293 K;0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.71 Å
R-free 0.209
|
|
8B3T
Hen Egg White Lysozyme 4s in situ crystallization
Deposited 2022-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;293 K;0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.78 Å
R-free 0.200
|
|
8B3U
Hen Egg White Lysozyme 6s in situ crystallization
Deposited 2022-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;293 K;0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.71 Å
R-free 0.194
|
|
8B3V
Hen Egg White Lysozyme 8s in situ crystallization
Deposited 2022-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
ACT ACETATE ION × 1
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;293 K;0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.74 Å
R-free 0.185
|
|
8BOV
X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 7.5
Deposited 2022-11-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
ACT ACETATE ION × 2
R0I 1-[1,3-dimethyl-4-(1~{H}-1,2,3-triazol-5-yl)imidazol-1-ium-2-yl]-1,2',11'-trimethyl-spiro[1$l^{6}-platinacycloprop-2-ene-1,15'-1,12-diaza-15$l^{6}-platinatetracyclo[10.2.1.0^{5,14}.0^{8,13}]pentadeca-2,4,6,8,10,13-hexaene] × 1
DMS DIMETHYL SULFOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate
0.1 M Hepes buffer pH 7.5
|
Resolution 1.25 Å
R-free 0.218
|
|
8BOY
X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 4.0
Deposited 2022-11-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 10
R0I 1-[1,3-dimethyl-4-(1~{H}-1,2,3-triazol-5-yl)imidazol-1-ium-2-yl]-1,2',11'-trimethyl-spiro[1$l^{6}-platinacycloprop-2-ene-1,15'-1,12-diaza-15$l^{6}-platinatetracyclo[10.2.1.0^{5,14}.0^{8,13}]pentadeca-2,4,6,8,10,13-hexaene] × 1
PT PLATINUM (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium Nitrate
|
Resolution 1.33 Å
R-free 0.219
|
|
8BPH
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 3)
Deposited 2022-11-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
SIN SUCCINIC ACID × 1
R3D Ru2-(OH)8 cluster × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid
|
Resolution 1.07 Å
R-free 0.209
|
|
8BPJ
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 1)
Deposited 2023-01-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
NO3 NITRATE ION × 5
TZ6 9,11-bis(4-fluorophenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;20% ethylene glycol, 0.1 M sodium acetate buffer at pH 4.0, 0.6 M sodium nitrate
|
Resolution 1.38 Å
R-free 0.231
|
|
8BPU
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 2)
Deposited 2022-11-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
R2I 9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 1
R2U Ru2-(OH)6 cluster × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate, 0.1 M Hepes buffer pH 7.5
|
Resolution 1.81 Å
R-free 0.289
|
|
8BQM
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 4)
Deposited 2022-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 1
ACT ACETATE ION × 2
R2U Ru2-(OH)6 cluster × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M sodium chloride, 0.1 M sodium acetate buffer pH 4.0
|
Resolution 1.17 Å
R-free 0.225
|
|
8BQP
Hen Egg-White Lysozyme (HEWL) complexed with methyl-functionalised Anderson-Evans polyoxometalate
Deposited 2022-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
U7U Mn-Mo(6)-O(24)-C(10) cluster × 1
ACT ACETATE ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;130 mg/mL Lysozyme, 20 mM AE-CH3, 1.0 M lithium chloride, 0.1 M sodium acetate and 30% (w/v) PEG 6000
|
Resolution 1.24 Å
R-free 0.167
|
|
8BQQ
Hen Egg-White Lysozyme (HEWL) complexed with amine-functionalised Anderson-Evans polyoxometalate
Deposited 2022-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
RJU Mn-Mo(6)-N(2)-O(24)-C(8) cluster × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;130 mg/mL Lysozyme, 20 mM AE-NH2, 1.0 M lithium chloride, 0.1 M sodium acetate and 30% (w/v) PEG 6000
|
Resolution 1.57 Å
R-free 0.232
|
|
8BQR
Hen Egg-White Lysozyme (HEWL) complexed with biotin-functionalised Anderson-Evans polyoxometalate
Deposited 2022-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
R9H Anderson-Evans polyoxometalate (biotin-functionalised) × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;50 mg/mL Lysozyme, 200 mg/mL AE-Biot, of 0.5 M calcium chloride, 30% (w/v) PEG 4000 and 0.1 M HEPES buffer (pH 8.5).
|
Resolution 2.32 Å
R-free 0.278
|
|
8BQT
Hen Egg-White Lysozyme (HEWL) complexed with two methyl-functionalised Anderson-Evans polyoxometalates
Deposited 2022-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
U7U Mn-Mo(6)-O(24)-C(10) cluster × 2
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;130 mg/mL Lysozyme, 20 mM AE-CH3, 0.1 M magnesium chloride, 0.1 M sodium acetate buffer (pH 4.6) and 25% (w/v) PEG 400.
|
Resolution 1.47 Å
R-free 0.202
|
|
8C39
X-ray structure of HEWL upon reaction with a Ruthenium(II)-arene Complexed with Glycosylated Carbene Ligands (5)
Deposited 2022-12-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
NO3 NITRATE ION × 10
CL CHLORIDE ION × 1
T8K [1-[(3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-3-methyl-imidazol-1-ium-2-yl]-nitrooxy-tris(oxidanyl)ruthenium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;20% ethylene glycol, 0.1 M sodium acetate buffer at pH 4.0, 0.6 M sodium nitrate
|
Resolution 1.20 Å
R-free 0.221
|
|
8CPC
3D electron diffraction structure of Hen Egg-White Lysozyme from nano-crystals obtained by high pressure freezing and cryo-sectioning
Deposited 2023-03-02
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 5.5;100 mM sodium citrate pH 5.5, 0.8-1.6 M NaCl
cryo-EM vitrification conditions
Cryogen NITROGEN;Freezing carried out at high pressure (210 MPa) and -196 C, using a Leica EM HPM100
|
Resolution 2.91 Å
R-free 0.295
|
|
8CVU
20ns Temperature-Jump (Light) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.172
|
|
8CVV
20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.170
|
|
8CVW
20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.167
|
|
8CW0
20us Temperature-Jump (Light) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.167
|
|
8CW1
20us Temperature-Jump (Dark1) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.168
|
|
8CW3
20us Temperature-Jump (Dark2) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.169
|
|
8CW5
200us Temperature-Jump (Light) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.181
|
|
8CW6
200us Temperature-Jump (Dark1) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.65 Å
R-free 0.172
|
|
8CW7
200us Temperature-Jump (Dark2) XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.176
|
|
8CW8
Laser Off Temperature-Jump XFEL structure of Lysozyme
Deposited 2022-05-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å
R-free 0.183
|
|
8CWB
Laser Off Temperature-Jump XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.51 Å
R-free 0.168
|
|
8CWC
20ns Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å
R-free 0.169
|
|
8CWD
20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å
R-free 0.163
|
|
8CWE
20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å
R-free 0.162
|
|
8CWF
200us Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å
R-free 0.166
|
|
8CWG
200us Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å
R-free 0.167
|
|
8CWH
200us Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 2
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;291 K;Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å
R-free 0.168
|
|
8D5S
Crystal structure of hen egg white lysozyme at 100 Kelvin
Deposited 2022-06-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.213
|
|
8D5T
Crystal structure of hen egg white lysozyme at 100 Kelvin (Duplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.212
|
|
8D5U
Crystal structure of hen egg white lysozyme at 100 Kelvin (Triplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.212
|
|
8D5W
Crystal structure of hen egg white lysozyme at 125 Kelvin
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.214
|
|
8D5X
Crystal structure of hen egg white lysozyme at 125 Kelvin (Duplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.214
|
|
8D5Z
Crystal structure of hen egg white lysozyme at 125 Kelvin (Triplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.217
|
|
8D60
Crystal structure of hen egg white lysozyme at 150 Kelvin
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.209
|
|
8D61
Crystal structure of hen egg white lysozyme at 150 Kelvin (Duplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.211
|
|
8D62
Crystal structure of hen egg white lysozyme at 150 Kelvin (Triplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.190
|
|
8D69
Crystal structure of hen egg white lysozyme at 175 Kelvin
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.220
|
|
8D6B
Crystal structure of hen egg white lysozyme at 175 Kelvin (Duplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.204
|
|
8D6I
Crystal structure of hen egg white lysozyme at 175 Kelvin (Triplicate)
Deposited 2022-06-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.223
|
|
8D75
Crystal structure of hen egg white lysozyme at 200 Kelvin
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.202
|
|
8D77
Crystal structure of hen egg white lysozyme at 200 Kelvin (Duplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.202
|
|
8D7A
Crystal structure of hen egg white lysozyme at 200 Kelvin (Triplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.195
|
|
8D7B
Crystal structure of hen egg white lysozyme at 225 Kelvin
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.226
|
|
8D7C
Crystal structure of hen egg white lysozyme at 225 Kelvin (Duplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.195
|
|
8D7D
Crystal structure of hen egg white lysozyme at 225 Kelvin (Triplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.207
|
|
8D7J
Crystal structure of hen egg white lysozyme at 250 Kelvin
Deposited 2022-06-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.191
|
|
8D7L
Crystal structure of hen egg white lysozyme at 250 Kelvin (Duplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.196
|
|
8D7Q
Crystal structure of hen egg white lysozyme at 250 Kelvin (Triplicate)
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.220
|
|
8D7S
Crystal structure of hen egg white lysozyme at 275 Kelvin
Deposited 2022-06-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.234
|
|
8D8A
Crystal structure of hen egg white lysozyme at 275 Kelvin (Duplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.260
|
|
8D8B
Crystal structure of hen egg white lysozyme at 275 Kelvin (Triplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.190
|
|
8D8C
Crystal structure of hen egg white lysozyme at 300 Kelvin
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.228
|
|
8D8D
Crystal structure of hen egg white lysozyme at 300 Kelvin (Duplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.203
|
|
8D8E
Crystal structure of hen egg white lysozyme at 300 Kelvin (Triplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.196
|
|
8D8F
Crystal structure of hen egg white lysozyme at 325 Kelvin
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.243
|
|
8D8G
Crystal structure of hen egg white lysozyme at 325 Kelvin (Duplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.236
|
|
8D8H
Crystal structure of hen egg white lysozyme at 325 Kelvin (Triplicate)
Deposited 2022-06-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 7
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å
R-free 0.241
|
|
8DCT
Lysozyme cluster 3 dual apo structure
Deposited 2022-06-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å
R-free 0.265
|
|
8DCU
Lysozyme cluster 0028 (benzamidine ligand)
Deposited 2022-06-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å
R-free 0.262
|
|
8DCV
Lysozyme cluster 0043, NAG ligand
Deposited 2022-06-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å
R-free 0.187
|
|
8DCW
Lysozyme cluster 0062 (NAG and benzamidine ligands)
Deposited 2022-06-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
BEN BENZAMIDINE × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å
R-free 0.237
|
|
8DYZ
Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset
Deposited 2022-08-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.8;295 K;Reservoir contained 1.1 M NaCl, 0.1 M NaOAc pH 4.8. Drops contained 2 microliters each of 40 mg/mL protein and well solution.
|
Resolution 1.27 Å
R-free 0.133
|
|
8DZ7
Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset
Deposited 2022-08-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;318 K;Reservoir contained 1.0-1.1 M NaCl, 0.1 M NaOAc pH 4.6. Drops of 30 microliters contained a 1:2 ratio of 90-100 mg/mL protein and reservoir solution.
|
Resolution 1.34 Å
R-free 0.136
|
|
8E54
MicroED structure of triclinic lysozyme recorded on K3
Deposited 2022-08-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
1–147(147 aa)
|
Not recorded
|
NO3 NITRATE ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.20 Å
R-free 0.242
|
|
8EZO
Lysozyme Anomalous Dataset at 220 K and 7.1 keV
Deposited 2022-11-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 10
NA SODIUM ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å
R-free 0.191
|
|
8EZP
Lysozyme Anomalous Dataset at 260 K and 7.1 keV
Deposited 2022-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 7
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å
R-free 0.172
|
|
8EZU
Lysozyme Anomalous Dataset at 273 K and 7.1 keV
Deposited 2022-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 11
NA SODIUM ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å
R-free 0.171
|
|
8EZX
Lysozyme Anomalous Dataset at 293 K and 7.1 keV
Deposited 2022-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 8
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å
R-free 0.166
|
|
8F00
Lysozyme Anomalous Dataset at 293 K and 12 keV
Deposited 2022-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 10
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate
|
Resolution 1.20 Å
R-free 0.146
|
|
8F0B
Lysozyme Anomalous Dataset at 240 K and 7.1 keV
Deposited 2022-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 10
NA SODIUM ION × 2
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å
R-free 0.198
|
|
8F28
Lysozyme Structures from Single-Entity Crystallization Method NanoAC
Deposited 2022-11-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
ACT ACETATE ION × 3
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.8;295 K;A new crystallization method named NanoAC was used. Protein solution and precipitant solution were connected through a single nanopipette to control (in time and space) nucleation and crystal growth
|
Resolution 1.20 Å
R-free 0.170
|
|
8F2G
Crystal structure of Hen Egg White Lysozyme at 0.44 GPa
Deposited 2022-11-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;293 K;1 M NaCl, 100 mM Na acetate, pH 4.7
|
Resolution 1.84 Å
R-free 0.263
|
|
8FP6
Crystal structure of hen egg white lysozyme
Deposited 2023-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.228
|
|
8FP7
Crystal structure of hen egg white lysozyme
Deposited 2023-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.245
|
|
8FP8
Crystal structure of hen egg white lysozyme
Deposited 2023-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.219
|
|
8FPB
Crystal structure of hen egg white lysozyme
Deposited 2023-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.254
|
|
8FPD
Crystal structure of hen egg white lysozyme
Deposited 2023-01-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.291
|
|
8FPM
Crystal structure of hen egg white lysozyme
Deposited 2023-01-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.279
|
|
8FPN
Crystal structure of hen egg white lysozyme
Deposited 2023-01-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.292
|
|
8FPP
Crystal structure of hen egg white lysozyme
Deposited 2023-01-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.240
|
|
8FPR
Crystal structure of hen egg white lysozyme
Deposited 2023-01-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.253
|
|
8FPU
Crystal structure of hen egg white lysozyme
Deposited 2023-01-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.262
|
|
8FRY
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.269
|
|
8FS0
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.287
|
|
8FS9
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.305
|
|
8FSA
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.267
|
|
8FSC
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.230
|
|
8FSF
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.239
|
|
8FSG
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.246
|
|
8FSH
Crystal structure of hen egg white lysozyme
Deposited 2023-01-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.238
|
|
8FSM
Crystal structure of hen egg white lysozyme
Deposited 2023-01-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.250
|
|
8FSN
Crystal structure of hen egg white lysozyme
Deposited 2023-01-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.263
|
|
8FST
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.249
|
|
8FSU
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.256
|
|
8FSV
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.250
|
|
8FSW
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.265
|
|
8FSX
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.287
|
|
8FSY
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.282
|
|
8FT0
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.294
|
|
8FT1
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.271
|
|
8FT2
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.307
|
|
8FT3
Crystal structure of hen egg white lysozyme
Deposited 2023-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4.6;295 K;1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å
R-free 0.240
|
|
8GMV
Crystal structure of lysozyme
Deposited 2022-08-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.6;298 K;Na-acetate, NaCl, PEG 8000
|
Resolution 2.20 Å
R-free 0.234
|
|
8GMW
Crystal structure of lysozyme
Deposited 2022-08-22
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.6;298 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.35 Å
R-free 0.194
|
|
8GQ1
HyHEL10 Fab complexed with hen egg lysozyme carrying arginine cluster in framework region of light chain.
Deposited 2022-08-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
19–147(129 aa)
|
Not recorded
|
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;PEG 400, sodium citrate tribasic dihydrate, Tris hydrochloride
|
Resolution 3.13 Å
R-free 0.267
|
|
8H3W
Crystal structure of chicken egg lysozyme at ambient temperature
Deposited 2022-10-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;0.09 M HEPES-NaOH pH 7.5, 1.26 M sodium citrate tribasic dihydrate, 10% v/v glycerol
|
Resolution 2.39 Å
R-free 0.225
|
|
8H8T
Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, edge)
Deposited 2022-10-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;298.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å
R-free 0.232
|
|
8H8U
Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, center)
Deposited 2022-10-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;298.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å
R-free 0.234
|
|
8H8V
Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, edge)
Deposited 2022-10-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;298.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å
R-free 0.256
|
|
8H8W
Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, center)
Deposited 2022-10-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;298.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å
R-free 0.256
|
|
8JQV
Hen egg-white lysozyme solved from 1D fixed target delivery system
Deposited 2023-06-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4;291 K;0.1M sodium acetate pH4.0, 2M NaCl, 5% PEG 6K
|
Resolution 1.83 Å
R-free 0.230
|
|
8K8M
Crystallographic structure of Lysozyme C from chicken
Deposited 2023-07-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION;pH 4.6;298 K;5%(w/v) NaCl, 0.1M Na acetate pH4.6
|
Resolution 1.60 Å
R-free 0.188
|
|
8LYZ
AN X-RAY STUDY OF THE STRUCTURE AND BINDING PROPERTIES OF IODINE-INACTIVATED LYSOZYME
Deposited 1977-09-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
|
|
8OM8
X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure A)
Deposited 2023-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
VSU tris-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(V)3O7 × 1
VTZ 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.08 Å
R-free 0.190
|
|
8OMS
X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure B)
Deposited 2023-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
VTU bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid at pH 7.0
|
Resolution 1.10 Å
R-free 0.167
|
|
8OMT
X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure C)
Deposited 2023-03-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
VTU bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 × 1
VTZ 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate
0.1 M Hepes buffer pH 7.5
|
Resolution 1.10 Å
R-free 0.144
|
|
8OWC
Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4
Deposited 2023-04-27
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
7MT Tb-Xo4 × 1
CL CHLORIDE ION × 7
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;650 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.70 Å
R-free 0.209
|
|
8P1A
Lysozyme structure solved from serial crystallography data collected at 2 kHz for 5 seconds with JUNGFRAU detector at MAXIV
Deposited 2023-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;293 K;22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 2.05 Å
R-free 0.226
|
|
8P1B
Lysozyme structure solved from serial crystallography data collected at 2 kHz with JUNGFRAU detector at MAXIV
Deposited 2023-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;293 K;22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.70 Å
R-free 0.192
|
|
8P1C
Lysozyme structure solved from serial crystallography data collected at 1 kHz with JUNGFRAU detector at MAXIV
Deposited 2023-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;293 K;22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.58 Å
R-free 0.197
|
|
8P1D
Lysozyme structure solved from serial crystallography data collected at 100 Hz with JUNGFRAU detector at MAXIV
Deposited 2023-05-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;293 K;22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.60 Å
R-free 0.190
|
|
8P2Q
Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-OH
Deposited 2023-05-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
WRT TbXo4-OH × 1
CL CHLORIDE ION × 5
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.69 Å
R-free 0.195
|
|
8PFT
X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition A
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 2
NO3 NITRATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.30 Å
R-free 0.246
|
|
8PFU
X-ray structure of the adduct formed upon reaction of Lysozyme with K3[Ru2(CO3)4] in condition A
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
NO3 NITRATE ION × 7
YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 4
CO3 CARBONATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.18 Å
R-free 0.202
|
|
8PFV
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DAniF)(O2CCH3)3] in condition A
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
NO3 NITRATE ION × 5
YMQ 9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.46 Å
R-free 0.211
|
|
8PFW
X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DAniF)(CO3)3] in condition A
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
NO3 NITRATE ION × 3
YWR K2[Ru2(DAniF)(CO3)3] × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.12 Å
R-free 0.239
|
|
8PFX
X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition B
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
FMT FORMIC ACID × 2
YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.03 Å
R-free 0.214
|
|
8PFY
X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DAniF)(CO3)3] in condition B
Deposited 2023-06-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.19 Å
R-free 0.212
|
|
8PH5
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)2(O2CCH3)2] in condition B
Deposited 2023-06-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
ZJK 1-oxidanyl-6,8,9,11-tetraphenyl-2,4-dioxa-6,8,9,11-tetraza-1$l^{5},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate and 0.1 M HEPES buffer at pH 7.5
|
Resolution 1.29 Å
R-free 0.280
|
|
8PH6
X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DPhF)(CO3)3] in condition B
Deposited 2023-06-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
ZWL [Ru2(DPhF)(Formate)(CO3)] × 1
YWV [Ru2(DPhF)(Formate)] × 1
ZWO Ru2(DPhF)(CO3)3 × 1
ZXE Ru2(DPhF)(CO3)2(Formate) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate and 0.1 M HEPES buffer at pH 7.5
|
Resolution 1.07 Å
R-free 0.193
|
|
8PH7
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)(O2CCH3)3] in condition A
Deposited 2023-06-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ZQ2 [Ru2(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol) × 1
SIN SUCCINIC ACID × 1
ZWH [Ru2Cl(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)(succinic acid)2] × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid at pH 7.0
|
Resolution 1.41 Å
R-free 0.266
|
|
8PH8
X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)2(O2CCH3)2] in condition A
Deposited 2023-06-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
SIN SUCCINIC ACID × 4
ZJO 1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid at pH 7.0
|
Resolution 1.29 Å
R-free 0.187
|
|
8PIW
Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-NMet2
Deposited 2023-06-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 1
ZHT 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-[3-(dimethylamino)propyl]-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid × 1
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.72 Å
R-free 0.196
|
|
8POB
Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-SO3
Deposited 2023-07-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
TB TERBIUM(III) ION × 2
ZW0 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-(3-sulfopropyl)-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid × 1
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.74 Å
R-free 0.228
|
|
8PTE
Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion (structure B)
Deposited 2023-07-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
JQJ Polyoxidovanadate complex × 2
H1W pentakis(oxidanyl)vanadium × 2
NO3 NITRATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;20% ethylene glycol,
0.1 M sodium acetate buffer pH 4.0,
0.6 M sodium nitrate
|
Resolution 1.80 Å
R-free 0.233
|
|
8QCU
Lysozyme covalently bound to fac-[Re(CO)3-imidazole] complex, incubated for 38 weeks.
Deposited 2023-08-28
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 5
NA SODIUM ION × 1
VHL Tricarbonyl di(imidazole) rhenium(I) × 2
REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1
IMD IMIDAZOLE × 1
RE RHENIUM × 6
BR BROMIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;290.15 K;HEWL, ReAA, Imidazole, 1.0 M NaCl, and 0.05 M sodium acetate at 4.5 pH.
|
Resolution 1.15 Å
R-free 0.178
|
|
8QV8
Cryo-EM structure of the heat-irreversible amyloid fibrils of hen egg-white lysozyme
Deposited 2023-10-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: 15-meric
|
Chain A
19–147(129 aa)
Chain C
19–147(129 aa)
Chain E
19–147(129 aa)
Chain G
19–147(129 aa)
Chain I
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;20mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.26 Å
|
|
8REG
Lysozyme measured via serial crystallography from a kapton HARE-chip (50 micron)
Deposited 2023-12-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293.15 K;100mg/ml NaCl
|
Resolution 1.70 Å
R-free 0.169
|
|
8REH
Lysozyme measured via serial crystallography from a kapton HARE-chip (125 micron)
Deposited 2023-12-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293.15 K;100mg/ml NaCl
|
Resolution 1.70 Å
R-free 0.175
|
|
8RGE
Serial synchrotron in plate room temperature structure of Lysozyme.
Deposited 2023-12-13
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;295 K;1M acetic acid pH 3, 5 % Peg 6000, 20 % NaCl
|
Resolution 1.88 Å
R-free 0.231
|
|
8RLF
Hydrogenated hen egg-white lysozyme at room temperature
Deposited 2024-01-03
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 9
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.5;291 K;2 % NaNO3, 0.1 M Na acetate pH 4.5
|
Resolution 0.96 Å
R-free 0.124
|
|
8RLG
Perdeuterated hen egg-white lysozyme at room temperature
Deposited 2024-01-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
18–147(130 aa)
|
Not recorded
|
NO3 NITRATE ION × 9
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;291 K;0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 1.07 Å
R-free 0.129
|
|
8RLH
Neutron structure of hydrogenated hen egg-white lysozyme at room temperature
Deposited 2024-01-03
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 9
ACT ACETATE ION × 1
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.5;291 K;2 % NaNO3, 0.1 M Na acetate pH 4.5
|
Resolution 1.10 Å
R-free 0.234
|
|
8RLI
Neutron structure of perdeuterated hen egg-white lysozyme at room temperature
Deposited 2024-01-03
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
18–147(130 aa)
|
Not recorded
|
NO3 NITRATE ION × 8
ACT ACETATE ION × 1
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.5;291 K;0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 0.91 Å
R-free 0.247
|
|
8RNV
Hen Egg White Lysozyme soaked with cis-Ru(DMSO)4Cl2
Deposited 2024-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
ACT ACETATE ION × 1
RU RUTHENIUM ION × 2
NA SODIUM ION × 3
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.8M NaCl, 0.05M acetate buffer
|
Resolution 1.08 Å
R-free 0.167
|
|
8RNW
Hen Egg White Lysozyme soaked with trans-Ru(DMSO)4Cl2
Deposited 2024-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
RU RUTHENIUM ION × 2
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.8 NaCl, 0.05 sodium acetate
|
Resolution 1.12 Å
R-free 0.171
|
|
8RNX
Hen Egg White Lysozyme soaked with [HIsq][trans-RuCl4(DMSO)(Isq)]
Deposited 2024-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
NA SODIUM ION × 2
CL CHLORIDE ION × 3
RU RUTHENIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.8M NaCl, 0.05M sodium acetate
|
Resolution 1.25 Å
R-free 0.248
|
|
8RNY
Hen Egg White Lysozyme soaked with with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Deposited 2024-01-11
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 2
CL CHLORIDE ION × 8
NA SODIUM ION × 3
RU RUTHENIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.8 NaCl, 0.05M sodium acetate
|
Resolution 1.02 Å
R-free 0.144
|
|
8RPM
Lysozyme structure based on automated real-time serial crystallography data processing using CrystFEL
Deposited 2024-01-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;pH 3.5;295 K;Just in-time crystallization (JINXED): a lysozyme solution in acetate buffer (pH 3.5) was mixed with crystallization solution on a running conveyor belt using 3D printed micro nozzles. Crystallization solution: N,N',N'',N''',N'''',N'''''-Hexaacetyl chitohexaose in 33 mM acetate buffer, pH3.5, 6.67% (w/v) PEG4000, 2.07 M NaCl, 6.67% DMSO
|
Resolution 1.80 Å
R-free 0.222
|
|
8RSH
Lysozyme measured via serial crystallography from a silicon HARE chip
Deposited 2024-01-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293.15 K;100mg/ml NaCl
|
Resolution 1.70 Å
R-free 0.188
|
|
8RTJ
X-ray structure of lysozyme obtained upon reaction with [VIVO(8-HQ)2] in ethylene glycol
Deposited 2024-01-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
I3Y 2,2-bis($l^{1}-oxidanyl)-3-oxa-1$l^{4}-aza-2$l^{4}-vanadatricyclo[6.3.1.0^{4,12}]dodeca-1(12),4,6,8,10-pentaene × 1
V VANADIUM ION × 1
NO3 NITRATE ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;20% ethylene glycol, 0.6 M sodium nitrate,
0.1 M sodium acetate at pH 4.5
|
Resolution 1.27 Å
R-free 0.197
|
|
8RTK
X-ray structure of lysozyme obtained upon reaction with [VIVO(8-HQ)2] in sodium formate
Deposited 2024-01-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
A1H23 2-$l^{1}-oxidanyl-2,2'-spirobi[3-oxa-1$l^{4}-aza-2$l^{7}-vanadatricyclo[6.3.1.0^{4,12}]dodeca-1(12),4,6,8,10-pentaene] 2-oxide × 1
VVO oxovanadium(2+) × 2
VVB bis(oxidanyl)vanadium × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate, 0.1 M Hepes at pH 7.5
|
Resolution 1.21 Å
R-free 0.192
|
|
8RUS
Hen egg-white lysozyme (HEWL) structure from EuXFEL FXE, multi-hit Droplet-on-Demand (DoD) injection, 9.3 keV photon energy, space group P432121
Deposited 2024-01-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
ACT ACETATE ION × 1
PEG DI(HYDROXYETHYL)ETHER × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3.5;298 K;1:2 lysozyme (100 mg mL-1 in 50 mM NaOAc (pH 3.5)) and crystallization solution (0.1 M NaOAc (pH 3.5), 5% PEG6000 (v/v), 3.2 M NaCl) at 298K.
|
Resolution 1.38 Å
R-free 0.200
|
|
8S2U
SSX structure of Lysozyme grown in batch conditions
Deposited 2024-02-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;294 K;Protein dissolved in 20 mM sodium acetate pH 4.6
Protein and precipitant mixed in a 1:4 ratio
Precipitant solution: 6% PEG 6000 (w/v), 3.4M NaCl and 1M sodium acetate pH 3.0
|
Resolution 1.80 Å
R-free 0.231
|
|
8S2V
SSX structure of Lysozyme grown in microfluidic droplets
Deposited 2024-02-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC;pH 3;294 K;20 mg/mL Lysozyme dissolved in 20 mM sodium acetate pH 4.6
Precipitant: 6% PEG 6000 (W/V), 3.4M NaCl and 1M sodium acetate pH 3.0
|
Resolution 1.80 Å
R-free 0.190
|
|
8SCY
Lysozyme crystallized in cyclic olefin copolymer-based microfluidic chips
Deposited 2023-04-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.6;277 K;2 M NaCl with 0.1 M sodium acetate buffer (pH 4.6)
|
Resolution 1.45 Å
R-free 0.212
|
|
8SIL
Lysozyme crystallized in cyclic olefin copolymer-based microfluidic chips
Deposited 2023-04-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 4.6;277 K;2 M NaCl with 0.1 M sodium acetate buffer (pH 4.6)
|
Resolution 1.70 Å
R-free 0.281
|
|
8W6K
in situ room temperature Laue crystallography
Deposited 2023-08-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;293 K;sodium acetate buffer, pH 4.55, and sodium chloride
|
Resolution 2.00 Å
R-free 0.298
|
|
8WDI
Crystal structure of lysozyme by fixed-target pink-beam serial synchrotron crystallography
Deposited 2023-09-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;295 K;Na-acetate, NaCl, PEG8000
|
Resolution 2.20 Å
R-free 0.299
|
|
8WZF
Dark state SFX structure of hen egg white lysozyme microcrystals immobilized with a Mn carbonyl complex at RT.
Deposited 2023-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;0.1M Acetate buffer (pH3.0), 28% NaCl
|
Resolution 1.60 Å
R-free 0.226
|
|
8WZG
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 10 ns after photoexcitation at RT.
Deposited 2023-11-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 4
XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å
R-free 0.201
|
|
8WZR
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT.
Deposited 2023-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å
R-free 0.197
|
|
8WZT
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation at RT.
Deposited 2023-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 2
XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å
R-free 0.212
|
|
8WZV
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation with 40 microJoules laser intensity at RT.
Deposited 2023-11-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å
R-free 0.191
|
|
8Y1R
in situ room temperature Laue crystallography
Deposited 2024-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;293 K;sodium acetate buffer, pH 4.55, and sodium chloride
|
Resolution 2.00 Å
R-free 0.260
|
|
8Y1S
in situ room temperature Laue crystallography
Deposited 2024-01-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;290 K;Crystals were grown from NaCl as a crystallizing agent at pH 4.3
|
Resolution 1.52 Å
|
|
8Y9W
CRYSTAL STRUCTURE OF A LYSOZYME FROM HEN EGG WHITE
Deposited 2024-02-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;300 K;0.1 M sodium acetate, 6% sodium chloride
|
Resolution 1.90 Å
R-free 0.255
|
|
8YA1
HEN EGG WHITE LYSOZYME
Deposited 2024-02-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;0.1 M sodium acetate, 6% sodium chloride
|
Resolution 1.57 Å
R-free 0.213
|
|
8YA4
Crystal structure of a lysozyme form hen egg white
Deposited 2024-02-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;300 K;0.1 M sodium acetate, 6% sodium chloride
|
Resolution 2.10 Å
R-free 0.240
|
|
8YBG
Crystal structure of lysozyme by serial synchrotron crystallography
Deposited 2024-02-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;sodium acetate, sodium chloride, PEG 8000
|
Resolution 1.55 Å
R-free 0.220
|
|
8YBH
Crystal structure of lysozyme by macromolecular crystallography
Deposited 2024-02-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;sodium acetate, sodium chloride, PEG 8000
|
Resolution 1.55 Å
R-free 0.189
|
|
8Z51
Hen Egg-White Lysozyme (HEWL) complexed with Emetine
Deposited 2024-04-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
34G emetine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;0.1M Na-acetate pH 4.5, 6.5 %(w/v) NaCl
|
Resolution 1.50 Å
R-free 0.213
|
|
8Z52
Hen Egg-White Lysozyme (HEWL) complexed with Theophylline
Deposited 2024-04-18
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
TEP THEOPHYLLINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.48 Å
R-free 0.209
|
|
8ZST
Lysozyme Crystallized with Bioassembler on Earth
Deposited 2024-06-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NO3 NITRATE ION × 1
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.8;294 K;SODIUM ACETATE 0.1M AT PH 4.8, NACL 13%, Gd(HP-D03A) 250mM, 294K
|
Resolution 0.80 Å
R-free 0.133
|
|
8ZSU
Lysozyme Crystallized with Bioassembler in Space Microgravity
Deposited 2024-06-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GD GADOLINIUM ATOM × 2
DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2
NO3 NITRATE ION × 1
CL CHLORIDE ION × 6
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.8;292 K;SODIUM ACETATE 0.1M AT PH 4.8, NACL 13%, Gd(HP-D03A) 250mM, 292K
|
Resolution 1.09 Å
R-free 0.142
|
|
9B7C
high-resolution ambient temperature structure of lysozyme soaked with sodium iodide
Deposited 2024-03-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 2
NA SODIUM ION × 1
IOD IODIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;PEG4000, sodium citrate, 100 mM sodium iodide, glycerol
|
Resolution 1.10 Å
R-free 0.123
|
|
9B7E
S_SAD structure of HEWL using lossy compression data with a compression ratio of 422
Deposited 2024-03-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Mutation:None
|
EDO 1,2-ETHANEDIOL × 4
CL CHLORIDE ION × 8
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;1000 mM NaCl
100 mM NaAcetate pH 4.6
50 mM Glycerol
50 mM Ethylen Glycol
Drop= 1 uL + 1uL
|
Resolution 1.65 Å
R-free 0.200
|
|
9B7F
S_SAD structure of HEWL using lossless default compression
Deposited 2024-03-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Mutation:None
|
EDO 1,2-ETHANEDIOL × 4
CL CHLORIDE ION × 8
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;1000 mM NaCl
100 mM NaAcetate pH 4.6
50 mM Glycerol
50 mM Ethylen Glycol
Drop= 1 uL + 1uL
|
Resolution 1.65 Å
R-free 0.198
|
|
9C9H
Interaction of chlorido(8-aminoquinoline)(pentamethylcyclopentadiene)rhodium(III) with HEWL
Deposited 2024-06-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
ACY ACETIC ACID × 3
A1AVD Rh(pentamethylcyclopentadiene)(8-aminoquinoline)Cl × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;294 K;Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Rh(III)(pentamethylcyclopentadiene)(8-aminoquinoline)chlorido (0.98 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.25 Å
R-free 0.188
|
|
9ENZ
X-ray structure of the adduct formed upon reaction of picoplatin with lysozyme (structure A)
Deposited 2024-03-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 2
ACT ACETATE ION × 2
NH3 AMMONIA × 2
PT PLATINUM (II) ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;20% ethylene glycol, 0.6 M sodium nitrate and 0.1 sodium acetate pH 4.5
|
Resolution 1.60 Å
R-free 0.230
|
|
9EO2
X-ray structure of the adduct formed upon reaction of picoplatin with lysozyme (structure B)
Deposited 2024-03-14
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NO3 NITRATE ION × 3
GOL GLYCEROL × 1
ACT ACETATE ION × 4
PT PLATINUM (II) ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;20% ethylene glycol, 0.6 M sodium nitrate and 0.1 sodium acetate pH 4.5
|
Resolution 1.36 Å
R-free 0.208
|
|
9EVU
HEN EGG-WHITE Lysozyme incubated at 99% relative humidity
Deposited 2024-04-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.177
|
|
9EX0
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure A)
Deposited 2024-04-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 6
NA SODIUM ION × 2
A1ICR Polyoxidovanadate complex × 2
VO4 VANADATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.45 Å
R-free 0.219
|
|
9EX1
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure B)
Deposited 2024-04-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
A1H8D Polyoxidovanadate complex × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.78 Å
R-free 0.300
|
|
9EX2
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2</sub>] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)
Deposited 2024-04-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 2
VO4 VANADATE ION × 6
A1H8D Polyoxidovanadate complex × 4
CL CHLORIDE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.17 Å
R-free 0.189
|
|
9FA5
Lysozyme structure at room temperature by serial synchrotron crystallography with COC chips
Deposited 2024-05-10
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
PEG DI(HYDROXYETHYL)ETHER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;295 K;6% (w/v) PEG 6000, 0.1 M sodium acetate pH 3.0, 20% (w/v) sodium chloride
|
Resolution 1.60 Å
R-free 0.251
|
|
9FC3
HEN EGG-WHITE Lysozyme incubated at 99% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.181
|
|
9FC4
HEN EGG-WHITE Lysozyme incubated at 94% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.178
|
|
9FC5
HEN EGG-WHITE Lysozyme incubated at 99% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.179
|
|
9FC6
HEN EGG-WHITE Lysozyme incubated at 87% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.187
|
|
9FC7
HEN EGG-WHITE Lysozyme incubated at 99% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 6
CL CHLORIDE ION × 3
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.186
|
|
9FC8
HEN EGG-WHITE Lysozyme incubated at 60% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 6
CL CHLORIDE ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.194
|
|
9FC9
HEN EGG-WHITE Lysozyme incubated at 50% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 6
CL CHLORIDE ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.185
|
|
9FCA
HEN EGG-WHITE Lysozyme incubated at 40% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 6
CL CHLORIDE ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.177
|
|
9FCB
HEN EGG-WHITE Lysozyme incubated at 34% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 7
CL CHLORIDE ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 3.5;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.190
|
|
9FCC
HEN EGG-WHITE Lysozyme incubated at 80% relative humidity
Deposited 2024-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å
R-free 0.184
|
|
9FGX
Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody
Deposited 2024-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain D
19–147(129 aa)
Chain F
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.53 Å
|
|
9FGY
Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody - Local refinement
Deposited 2024-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
19–147(129 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å
|
|
9FUD
Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - without ligand GlcNAc (apo)
Deposited 2024-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;1 M sodium acetate pH 3.0, 20% (w/v) NaCl, 5% (w/v) PEG 6000
|
Resolution 2.05 Å
R-free 0.252
|
|
9FUE
Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - with ligand GlcNAc
Deposited 2024-06-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;1 M sodium acetate pH 3.0, 20% (w/v) NaCl, 5% (w/v) PEG 6000
|
Resolution 2.05 Å
R-free 0.265
|
|
9GCV
Identification of chloride ions in lysozyme at long wavelengths
Deposited 2024-08-02
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;294 K;100 mM sodium acetate pH 4.6, 1 M NaCl and 25% ethylene glycol
|
Resolution 2.70 Å
R-free 0.217
|
|
9GHX
Lysozyme covalently bound to fac-[Re(CO)3-imidazole] complex, incubated for 112 weeks. Data collection done at mammalian body temperature.
Deposited 2024-08-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
VHL Tricarbonyl di(imidazole) rhenium(I) × 2
REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1
IMD IMIDAZOLE × 1
NA SODIUM ION × 1
RE RHENIUM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;290.15 K;HEWL, ReAA, Imidazole, 1.0 M NaCl, and 0.05 M sodium acetate at 4.5 pH.
|
Resolution 2.19 Å
R-free 0.271
|
|
9GI7
Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-OH) polyoxometalate
Deposited 2024-08-17
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1IMF hexavanadate (V6-OH) polyoxometalate × 1
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;1.0 M Lithium Chloride, 0.1 M Tris, 20% (w/v) PEG 6000,
|
Resolution 1.76 Å
R-free 0.218
|
|
9GOG
X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with furan-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide
Deposited 2024-09-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 2
ACT ACETATE ION × 2
VVB bis(oxidanyl)vanadium × 1
A1IOM dioxidovanadium(V) complex with furan-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.24 Å
R-free 0.256
|
|
9GOK
X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with (E)-N'-(1-(2-hydroxy-5-methoxyphenyl)ethylidene)furan-2-carbohydrazide)
Deposited 2024-09-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
ACT ACETATE ION × 2
CL CHLORIDE ION × 3
A1ION dioxidovanadium(V) complex with (E)-N'-(1-(2-hydroxy-5-methoxyphenyl)ethylidene)furan-2-carbohydrazide × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.18 Å
R-free 0.221
|
|
9GYH
HEW Lysozyme with His 15 functionalized with iodoacetamide
Deposited 2024-10-02
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;0.05 M sodium acetate, 30% w/v PEG MME 5.000, 1.0 M sodium chloride
|
Resolution 1.60 Å
R-free 0.211
|
|
9GYH
HEW Lysozyme with His 15 functionalized with iodoacetamide
Deposited 2024-10-02
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;0.05 M sodium acetate, 30% w/v PEG MME 5.000, 1.0 M sodium chloride
|
Resolution 1.60 Å
R-free 0.211
|
|
9H3E
Hen egg white lysozyme crystallization and structure determination at room temperature in the CrystalChip
Deposited 2024-10-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 4.5;293 K;Protein crystallized by counter-diffusion in the CrystalChip, stock solution 60 mg/ml in 50 mM Na acetate pH 4.5, reservoir solution 2 M NaCl, 50 mM Na acetate pH 4.5
|
Resolution 1.50 Å
R-free 0.177
|
|
9H7W
Hen Egg White Lysozyme in Complex with Imidizole
Deposited 2024-10-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
A1ISW 2H-imidazol-2-ol × 2
PEG DI(HYDROXYETHYL)ETHER × 1
EDO 1,2-ETHANEDIOL × 1
IMD IMIDAZOLE × 6
NA SODIUM ION × 2
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;30% PEG 6000, 1 M NaCl, 50 mM sodium acetate
|
Resolution 1.13 Å
R-free 0.168
|
|
9HC2
Crystal structure of Lysozyme in complex with Gentisic Acid
Deposited 2024-11-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
GTQ 2,5-dihydroxybenzoic acid × 2
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;100 mM tri-Sodium citrate pH 4.0, 800 mM Ammonium sulfate
|
Resolution 1.27 Å
R-free 0.209
|
|
9HLK
X-ray structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure A)
Deposited 2024-12-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NH3 AMMONIA × 2
ACT ACETATE ION × 1
CL CHLORIDE ION × 1
PT PLATINUM (II) ION × 3
IOD IODIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;1.1 M sodium chloride
0.1 M sodium acetate buffer pH 4.5
|
Resolution 1.96 Å
R-free 0.269
|
|
9HMK
X-ray structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure B)
Deposited 2024-12-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 3
IOD IODIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.8 M succinic acid pH 7.0
|
Resolution 1.48 Å
R-free 0.259
|
|
9HMQ
X-structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure C)
Deposited 2024-12-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
PT PLATINUM (II) ION × 4
NH3 AMMONIA × 4
IOD IODIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;2.0 M sodium formate and 0.1 Hepes buffer pH 7.5
|
Resolution 2.25 Å
R-free 0.277
|
|
9HRU
The Lysozyme - pctx complex in space group P3121
Deposited 2024-12-18
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:0
|
A1IXG phosphated-cyclotrixylohydroquinoylene × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;1.6 M magnesium sulfate, 0.1 M MES pH 6.5
|
Resolution 1.88 Å
R-free 0.224
|
|
9HRU
The Lysozyme - pctx complex in space group P3121
Deposited 2024-12-18
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
19–147(129 aa)
|
Mutation:0
|
A1IXG phosphated-cyclotrixylohydroquinoylene × 1
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;1.6 M magnesium sulfate, 0.1 M MES pH 6.5
|
Resolution 1.88 Å
R-free 0.224
|
|
9HTI
Adduct formed during the incubation of dichloro(3-benzylbenzoselenazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Deposited 2024-12-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1IXJ [3-(phenylmethyl)-1,3-benzoselenazol-2-ylidene]ruthenium × 1
DMS DIMETHYL SULFOXIDE × 2
EDO 1,2-ETHANEDIOL × 2
ACT ACETATE ION × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;291.15 K;0.8M NaCl 0.1M NaOAc
|
Resolution 1.17 Å
R-free 0.182
|
|
9HTJ
Adduct formed during the incubation of dichloro(3-benzylbenzothiazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Deposited 2024-12-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
DMS DIMETHYL SULFOXIDE × 2
A1IXK [3-(phenylmethyl)-1,3-benzothiazol-2-ylidene]ruthenium × 1
ACT ACETATE ION × 1
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;291.15 K;0.8M NaCl 0.1M NaOAc
|
Resolution 1.49 Å
R-free 0.187
|
|
9I6J
Hen egg-white lysozyme structure embedded in LCP medium at 95% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.199
|
|
9I6K
Hen egg-white lysozyme structure at 85% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.196
|
|
9I6L
Hen egg-white lysozyme structure at 75% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.197
|
|
9I6M
Hen egg-white lysozyme structure at 65% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 5
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.199
|
|
9I6N
Hen egg-white lysozyme structure collected at EuXFEL SPB/SFX with HVE injection method
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 3
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.199
|
|
9I6O
Hen egg-white lysozyme structure embedded in LCP medium at 95% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 3;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.199
|
|
9I6P
Hen egg-white lysozyme structure embedded in LCP medium at 85% relative humidity
Deposited 2025-01-30
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 8;297 K;20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å
R-free 0.196
|
|
9I8L
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2</sub>] at 310 K
Deposited 2025-02-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
A1ICR Polyoxidovanadate complex × 2
A1H8D Polyoxidovanadate complex × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;310 K;1,1 M sodium chloride and 0,1 M sodium acetate buffer pH 4.0
|
Resolution 1.83 Å
R-free 0.284
|
|
9IG6
Hen egg-white lysozyme structure determined by 3DED/MicroED on a 200 keV microscope
Deposited 2025-02-19
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Mutation:none
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE;12 seconds
|
Resolution 2.80 Å
R-free 0.326
|
|
9J0L
Cryo-EM Structure of Lysozyme Type 1 Amyloid Fibrils
Deposited 2024-08-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 31
PDB declaration: 36-meric
|
Chain A
23–147(125 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.29 Å
|
|
9J0M
Cryo-EM Structure of Lysozyme Type 2 Amyloid Fibrils
Deposited 2024-08-02
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 21
PDB declaration: 16-meric
|
Chain A
23–147(125 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.21 Å
|
|
9K9Z
Room-temperature structure of lysozyme determined by serial synchrotron crystallography (MOSFLM)
Deposited 2024-10-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.80 Å
R-free 0.208
|
|
9KA0
Room-temperature structure of lysozyme determined by serial synchrotron crystallography (XGANDALF)
Deposited 2024-10-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;Na-acetate, NaCl, PEG 8000
|
Resolution 1.80 Å
R-free 0.190
|
|
9KJ7
Real-space refinement for the hen egg-white lysozyme structure
Deposited 2024-11-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;277.15 K;NaCl, Acetic-sodium acetate buffer
|
Resolution 1.30 Å
R-free 0.209
|
|
9KOT
HEWL crystal soaked in buffer of pH2.0
Deposited 2024-11-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;297 K;The concentration of the protein was 25 mg/ml. The precipitant solution in the reservoir was 100 mM sodium citrate/HCl buffer of pH 4.3 containing 1.2 M sodium chloride.
|
Resolution 1.50 Å
R-free 0.227
|
|
9L1L
Structure of anti-HEL AiTab
Deposited 2024-12-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain P
68–81(14 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 3.09 Å
|
|
9L71
HEWL crystal soaked in buffer of pH12.0
Deposited 2024-12-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;297 K;The concentration of the protein was 25 mg/ml. The precipitant solution in the reservoir was 100 mM sodium citrate/HCl buffer of pH 4.3 containing 1.2 M sodium chloride.
|
Resolution 2.00 Å
R-free 0.241
|
|
9L9R
Room-temperature structure of lysozyme determined by serial synchrotron crystallography
Deposited 2024-12-31
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, NaCl, PEG8000
|
Resolution 1.45 Å
R-free 0.194
|
|
9LMK
Room temperature structure of lysozyme by serial synchrotron crystallography (XDS)
Deposited 2025-01-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;295.5 K;Na-acetate, PEG 8000, NaCl
|
Resolution 1.50 Å
R-free 0.214
|
|
9LML
Room temperature structure of lysozyme by serial synchrotron crystallography (MOSFLM)
Deposited 2025-01-19
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;295.5 K;Na-acetate, PEG 8000, NaCl
|
Resolution 1.60 Å
R-free 0.199
|
|
9LYZ
X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME
Deposited 1979-12-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
|
|
9MP3
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000
|
Resolution 1.30 Å
R-free 0.224
|
|
9MP4
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (8 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.82 Å
R-free 0.221
|
|
9MP5
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (50 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.97 Å
R-free 0.257
|
|
9MP6
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (150 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 2.22 Å
R-free 0.252
|
|
9MP7
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (300 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 2.15 Å
R-free 0.245
|
|
9MP8
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (750 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.83 Å
R-free 0.208
|
|
9MP9
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (1000 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.90 Å
R-free 0.220
|
|
9MPA
Mix & Quench Time Resolved Lysozyme - NAG1 Complex (2000 ms)
Deposited 2024-12-30
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
CL CHLORIDE ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;pH 4.6;293 K;0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.85 Å
R-free 0.239
|
|
9ORV
X-ray diffraction structure of lysozyme co-crystallized with N,N',N"-triacetylchitotriose
Deposited 2025-05-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.60 Å
R-free 0.210
|
|
9ORW
X-ray diffraction structure of apo-form lysozyme
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.50 Å
R-free 0.218
|
|
9ORX
X-ray diffraction structure of lysozyme complexed with N,N',N"-triacetylchitotriose from a cocktail-soaked crystal
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.50 Å
R-free 0.234
|
|
9ORY
X-ray diffraction structure of lysozyme soaked with N,N',N"-triacetylchitotriose
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.40 Å
R-free 0.215
|
|
9ORZ
MicroED structure of apo-form lysozyme
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8;800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
R-free 0.250
|
|
9OS0
MicroED structure of lysozyme complexed with N,N',N"-triacetylchitotriose from cocktail-soaked crystals
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8;800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.40 Å
R-free 0.256
|
|
9OS1
MicroED structure of lysozyme co-crystallized with N,N',N"-triacetylchitotriose
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8;800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
R-free 0.264
|
|
9OS8
MicroED structure of lysozyme soaked with N,N',N"-triacetylchitotriose
Deposited 2025-05-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8;800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
R-free 0.269
|
|
9OZ5
Gradient equilibration of tetragonal lysozyme from 8% NaCl to 3% NaCl over 40 minutes
Deposited 2025-06-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;8% NaCl, 20 mM NaOAc pH 5.2
|
Resolution 1.30 Å
R-free 0.175
|
|
9P12
Lysozyme Room-Temperature In-Situ, Shipped
Deposited 2025-06-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;295 K;0.78 M sodium chloride, 0.1 M sodium acetate
|
Resolution 1.57 Å
R-free 0.203
|
|
9P13
Lysozyme Room-Temperature In-Situ, Grown On-Site
Deposited 2025-06-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;295 K;0.78 M sodium chloride, 0.1 M sodium acetate
|
Resolution 1.73 Å
R-free 0.205
|
|
9P6R
Structure of lysozyme-N,N',N"-triacetylchitotriose complex determined using REyes for automated MicroED
Deposited 2025-06-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
Fragment:lyzozyme
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.20 Å
R-free 0.276
|
|
9QSQ
Mn(III)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Deposited 2025-04-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1JAD Manganese substituted Wells-Dawson polyoxometalate × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;291 K;1M LiCL, 0.1 M Citric acid, 10% (w/v) PEG6000, pH 4.0
|
Resolution 1.87 Å
R-free 0.246
|
|
9QTL
SFX crystal structure of hen egg-white lysozyme (HEWL) using a guanosine derivative hydrogel as crystal matrix
Deposited 2025-04-09
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4.6;293.15 K;0,5 M Na-Acetate, 18 % w/v NaCl, 6 % w/v PEG 6K, pH 4.6
|
Resolution 1.75 Å
R-free 0.220
|
|
9QUM
Structure of lysozyme by continuous serial electron diffraction (SerialED)
Deposited 2025-04-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–147(147 aa)
|
Not recorded
|
ACT ACETATE ION × 1
CL CHLORIDE ION × 3
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5;Crystals were produced by adding 1 part of lysozyme solution (40 mg/mL) to 1 part of precipitant (0.8 M NaNO3, 50mM NaAc, pH 4.5)
cryo-EM vitrification conditions
Cryogen ETHANE;Manual blotting in room temperature with ambient humidity
|
Resolution 0.83 Å
R-free 0.206
|
|
9RBG
X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure A)
Deposited 2025-05-26
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
DVT DECAVANADATE × 1
A1JFD 2-[(4~{S})-1,1,6,6-tetrakis(oxidanyl)-3-oxidanylidene-2,5$l^{3},7-trioxa-1$l^{5},6$l^{4}-divanadabicyclo[3.2.0]heptan-4-yl]ethanoic acid × 1
VVO oxovanadium(2+) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.46 Å
R-free 0.312
|
|
9RBT
X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure B)
Deposited 2025-05-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
ACT ACETATE ION × 2
DVT DECAVANADATE × 1
A1JFD 2-[(4~{S})-1,1,6,6-tetrakis(oxidanyl)-3-oxidanylidene-2,5$l^{3},7-trioxa-1$l^{5},6$l^{4}-divanadabicyclo[3.2.0]heptan-4-yl]ethanoic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.18 Å
R-free 0.235
|
|
9RBV
X-ray structure of lysozyme when is treated with Cs2[V(V)2O4(mal)2]2H2O at 310K
Deposited 2025-05-27
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
NA SODIUM ION × 1
VVO oxovanadium(2+) × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;310 K;1.1 M sodium chloride and 0.1 M sodium acetate pH 4.0
|
Resolution 2.09 Å
R-free 0.293
|
|
9RUV
X-ray structure of the adduct formed upon reaction of dirhodium-tetraacetate with lysozyme at body temperature
Deposited 2025-07-05
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
RH Rhodium × 7
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;310 K;2.0 M sodium formate, 0.1 M hepes buffer pH 7.5
|
Resolution 2.12 Å
R-free 0.261
|
|
9RV6
5 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Deposited 2025-07-07
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;50mg/ml hewl, 22.4% (w/v) NaCl, 6.4% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.55 Å
R-free 0.214
|
|
9RVI
10 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Deposited 2025-07-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;19.6% (w/v) NaCl, 5.6% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.47 Å
R-free 0.172
|
|
9RVO
25 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography.
Deposited 2025-07-08
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;293 K;50mg/ml hewl, 22.4% (w/v) NaCl, 6.4% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.33 Å
R-free 0.168
|
|
9RZR
Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Hex) polyoxometalate
Deposited 2025-07-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1JKF Hexavanadate (V6-Hex) polyoxometalate × 2
MLI MALONATE ION × 3
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;291 K;1.5M Sodium Malonate
|
Resolution 1.27 Å
R-free 0.163
|
|
9RZS
Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-N3) polyoxometalate
Deposited 2025-07-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1JKB Hexavanadate (V6-N3) polyoxometalate × 1
CL CHLORIDE ION × 3
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;291 K;1.0M LiCl, 0.1M Citric acid, 10%(w/v) PEG 6000
|
Resolution 1.68 Å
R-free 0.229
|
|
9RZT
Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Man) polyoxometalate
Deposited 2025-07-16
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
A1JKC Hexavanadate (V6-Man) polyoxometalate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;291 K;1.0M LiCl, 0.1M Tris, 10%(w/v) PEG 6000
|
Resolution 1.73 Å
R-free 0.235
|
|
9S2A
X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with thiophene-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide
Deposited 2025-07-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain AAA
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
A1JLF 13-ethoxy-5-thiophen-2-yl-2,4$l^{3}-dioxa-6,7$l^{4}-diaza-3$l^{7}-vanadatricyclo[7.4.0.0^{3,7}]trideca-1(9),4,7,10,12-pentaene 3,3-dioxide × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.1 M sodium chloride, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.37 Å
R-free 0.233
|
|
9TBL
SSX Lysozyme at 100K
Deposited 2025-11-20
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 9
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;19.04% NaCl, 5.44% PEG 8,000, 68mM Na Acetate pH 3.0
|
Resolution 1.75 Å
R-free 0.211
|
|
9TEJ
Lysozyme crystal structure by beam sweeping serial crystallography with pink beam
Deposited 2025-11-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 2.10 Å
R-free 0.265
|
|
9TEK
Lysozyme crystal structure by beam sweeping serial crystallography
Deposited 2025-11-25
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;296 K;1M NaCl, 40% (v/v) ethylene glycol, 15% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 2.00 Å
R-free 0.256
|
|
9UGI
Room temperature structure of lysozyme by serial synchrotron crystallography
Deposited 2025-04-12
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES;293.5 K;sodium acetate, NaCl, PEG 8000
|
Resolution 1.80 Å
R-free 0.202
|
|
9UYR
In situ structure of egg-white lysozyme using a goniometer-compatible chip-based platform
Deposited 2025-05-15
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;40mg/mL in 50mM sodium acetate, 0.8M NaCl
|
Resolution 1.59 Å
R-free 0.194
|
|
9V3D
SFX structure of 3-5 micrometers Lysozyme microcrystals
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;290 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å
R-free 0.225
|
|
9V3G
SFX structure of 1 micrometer Lysozyme microcrystals
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 1
CL CHLORIDE ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.74 Å
R-free 0.201
|
|
9V3H
Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 2 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;290 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å
R-free 0.227
|
|
9V3I
Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 5 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;290 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å
R-free 0.225
|
|
9V3J
Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 9.7 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;290 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å
R-free 0.223
|
|
9V3K
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 1.3 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.72 Å
R-free 0.206
|
|
9V3L
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 5.0 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.75 Å
R-free 0.197
|
|
9V3M
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 7.5 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.77 Å
R-free 0.219
|
|
9V3N
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 9.7 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.78 Å
R-free 0.189
|
|
9V3O
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 1.3 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.80 Å
R-free 0.206
|
|
9V3P
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 2.5 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.81 Å
R-free 0.221
|
|
9V3Q
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 4 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.80 Å
R-free 0.215
|
|
9V3R
Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 5.0 seconds delay
Deposited 2025-05-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
NA SODIUM ION × 1
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 3;285 K;8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.82 Å
R-free 0.193
|
|
9WKS
Crystal structure of hen egg-white lysozyme determined in the commissioning of NanoTerasu MX-ES
Deposited 2025-09-01
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
CL CHLORIDE ION × 4
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;293 K;50mM sodium acetate, 1M NaCl
|
Resolution 1.20 Å
R-free 0.170
|
|
9XUA
Hen Egg-White Lysozyme (HEWL) complexed with Caffeine
Deposited 2025-11-24
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
19–147(129 aa)
|
Not recorded
|
NA SODIUM ION × 8
CFF CAFFEINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.40 Å
R-free 0.179
|