Lysozyme C
Gallus gallus
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric（3） Consistent with protein copy count | Chain A； UniProt 19–147 | Not recorded | Src substrate cortactin × 1 （Q60598） Abelson tyrosine-protein kinase 2 × 1 （P42684） | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, HANGING DROP；pH 6；297 K；1.0M Na Citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K | Resolution 1.65 Å R-free 0.225 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 3ULR | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 132L STRUCTURAL CONSEQUENCES OF REDUCTIVE METHYLATION OF LYSINE RESIDUES IN HEN EGG WHITE LYSOZYME: AN X-RAY ANALYSIS AT 1.8 ANGSTROMS RESOLUTION Deposited 1993-06-02 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 193L THE 1.33 A STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME Deposited 1995-09-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；pH 4.3
|
Resolution 1.33 Å R-free 0.226 |
| 194L THE 1.40 A STRUCTURE OF SPACEHAB-01 HEN EGG WHITE LYSOZYME Deposited 1995-09-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；pH 4.3
|
Resolution 1.40 Å R-free 0.226 |
| 1A2Y HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3 Deposited 1998-01-13 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：D18A | PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 1.50 Å R-free 0.251 |
| 1AKI THE STRUCTURE OF THE ORTHORHOMBIC FORM OF HEN EGG-WHITE LYSOZYME AT 1.5 ANGSTROMS RESOLUTION Deposited 1997-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.48；pH 4.48
|
Resolution 1.50 Å |
| 1AT5 HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE Deposited 1997-08-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2；CRYSTALS WERE PREPARED AT 277K FROM A SOLUTION CONTAINING 20 MG/ML PROTEIN, 7 MM TRI-N-ACETYLCHITOTRIOSE, 25 MG/ML SODIUM CHLORIDE, AND 100 MM ACETATE BUFFER PH 4.2, BY EQUILIBRATING THE SOLUTION AGAINST A RESERVOIR SOLUTION CONTAINING 50 MG/ML SODIUM CHLORIDE AND 100 MM ACETATE BUFFER PH 4.2.
|
Resolution 1.80 Å R-free 0.233 |
| 1AT6 HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE Deposited 1997-08-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；277 K；CRYSTALS WERE PREPARED AT 277 K FROM THE DROPLET MIXTURE OF A 20 MG/ML PROTEIN SOLUTION CONTAINING 7 MM TRI-N-ACETYLCHITOTRIOSE (NAG3) AND 50 MM ACETATE BUFFER PH 4.2 WITH EQUAL VOLUME OF A RESERVOIR SOLUTION CONTAINING 2.0 M AMMONIUM FORMATE AND 100 MM N-(2-HYDROXYETHYL)PIPERAZINE-N'-(2-ETHANESULFONIC ACID) (HEPES) BUFFER PH 7.5. PRIOR TO THE DIFFRACTION DATA COLLECTION, THE CRYSTAL WAS SOAKED IN A CRYOPROTECTANT SOLUTION CONTAINING 30 % (W/V) POLYETHYLENE GLYCOL 20,000, 2.2 M AMMONIUM FORMATE, 100 MM HEPES BUFFER PH 7.5, AND 7 MM NAG3 FOR 2 MINUTES AT 277 K.
|
Resolution 1.80 Å R-free 0.230 |
| 1AZF CHICKEN EGG WHITE LYSOZYME CRYSTAL GROWN IN BROMIDE SOLUTION Deposited 1997-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；pH 4.6
|
Resolution 1.80 Å R-free 0.240 |
| 1B0D Structural effects of monovalent anions on polymorphic lysozyme crystals Deposited 1998-11-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TSU PARA-TOLUENE SULFONATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；291 K；THE CRYSTAL WAS OBTAINED IN PRESENCE OF NAPTS WITH A FINAL PROTEIN CONCENTRATION OF 40.5 MG/ML IN HANGING DROPS USING VAPOR DIFFUSION METHOD. THE EQUILIBRATION AT 291K WAS DONE AGAINST A RESERVOIR SOLUTION CONTAINING 90 MM NAPTS, 50 MM SODIUM ACETATE ADJUSTED AT PH 4.5., vapor diffusion - hanging drop
|
Resolution 1.84 Å R-free 0.241 |
| 1B2K Structural effects of monovalent anions on polymorphic lysozyme crystals Deposited 1998-11-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；291 K；THE ISOIONIC PROTEIN HEWL WAS ACIDIFIED BY ADDING OF HI UNTIL THE PH 4.5 WAS REACHED AT 291K WERE 25 MG/ML OF PROTEIN AND 0.07 M OF NAI VERSUS A WELL CONTAINING 0.14 M OF NAI AT PH4.5
|
Resolution 1.60 Å R-free 0.237 |
| 1B2K Structural effects of monovalent anions on polymorphic lysozyme crystals Deposited 1998-11-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；291 K；THE ISOIONIC PROTEIN HEWL WAS ACIDIFIED BY ADDING OF HI UNTIL THE PH 4.5 WAS REACHED AT 291K WERE 25 MG/ML OF PROTEIN AND 0.07 M OF NAI VERSUS A WELL CONTAINING 0.14 M OF NAI AT PH4.5
|
Resolution 1.60 Å R-free 0.237 |
| 1BGI ORTHORHOMBIC LYSOZYME CRYSTALLIZED AT HIGH TEMPERATURE (310K) Deposited 1998-05-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 4.7；310 K；CRYSTALLIZATION WAS PERFORMED BY THE BATCH METHOD AT 310 K. THE SAME WAY AS DESCRIBED BY JOLLES AND BERTHOU (1972)., pH 4.7, batch method
|
Resolution 1.70 Å R-free 0.216 |
| 1BHZ LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF HEN EGG WHITE LYSOZYME FROM MASC DATA Deposited 1998-06-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
PROTEIN WAS CRYSTALLIZED FROM SODIUM CHLORIDE SOLUTIONS
|
Resolution 3.90 Å R-free 0.308 |
| 1BVK HUMANIZED ANTI-LYSOZYME FV COMPLEXED WITH LYSOZYME Deposited 1998-09-16 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 2.70 Å R-free 0.297 |
| 1BVK HUMANIZED ANTI-LYSOZYME FV COMPLEXED WITH LYSOZYME Deposited 1998-09-16 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 2.70 Å R-free 0.297 |
| 1BVX THE 1.8 A STRUCTURE OF GEL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME Deposited 1998-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
grown in gelled protein solution with agarose；pH 4.5；HEWL CRYSTALS WERE GROWN IN A GELLED PROTEIN SOLUTION WITH AGAROSE (SIGMA, TYPE VII: OF LOW GELLING TEMPERATURE), 4 % MPD IN ACETATE BUFFER (PH 4.5), THE PRECIPITATING AGENT SOL MPD IN BUFFER. THE GLASS TUBE USED WAS 6 CM TALL WITH AN IN CRYSTALS OF TYPICAL DIMENSIONS $SIM$0.7 $TIMES$ 0.6 $TIM, grown in gelled protein solution with agarose
|
Resolution 1.80 Å R-free 0.217 |
| 1BWH THE 1.8 A STRUCTURE OF GROUND CONTROL GROWN TETRAGONAL HEN EGG WHITE LYSOZYME Deposited 1998-09-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；CRYSTALLISATION TOOK PLACE AS A GROUND CONTROL TO HEWL CRYSTALLISATION IN THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE SHUTTLE'S LIFE AND MICROGRAVITY SPACELAB (LMS) MISSION (STS-78). A SOLUTION OF 21 MG OF HEN EGG WHITE LYSOZYME (3 X CRYSTALLIZED, DIALYSED AND LYOPHILIZED POWDER OF CHICKEN EGG WHITE LYSOZYME SUPPLIED BY SIGMA, L-6876 BATCH NUMBER, LOT 53H7145) DISSOLVED IN 250 UL 0.04 M ACETATE BUFFER (PH 4.7) WAS USED TO FILL THE PROTEIN CHAMBER (188 UL). THE SALT CHAMBERS (541 UL) WERE FILLED WITH 1.35 M NACL AND THE BUFFER CHAMBER (59 UL) WITH 0.04 M ACETATE BUFFER (PH 4.7). SODIUM AZIDE WAS ALSO ADDED TO THE PROTEIN AND BUFFER SOLUTION AS AN ANTI-FUNGAL AGENT (1.92 MG PER 188 UL). CRYSTALLISATION TOOK PLACE AT 20+/-1 C.
|
Resolution 1.80 Å R-free 0.233 |
| 1BWI THE 1.8 A STRUCTURE OF MICROBATCH OIL DROP GROWN TETRAGONAL HEN EGG WHITE LYSOZYME Deposited 1998-09-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
drops under paraffin oil；pH 4.7；291 K；A SOLUTION CONTAINING 40 MG/ML OF LYSOZYME (SIGMA L-6876, BATCH NUMBER, LOT 65H7025, IE A DIFFERENT SIGMA SAMPLE TO THE EXPERIMENTS DESCRIBED ABOVE) IN 10 MM SODIUM CITRATE BUFFER PH 4.7 WAS MIXED IN AN EPPENDORF TUBE WITH EQUAL VOLUMES OF 12 % SODIUM CHLORIDE (BDH). THE MIXTURE WAS FILTERED THROUGH A 0.22 UM FILTER AND 8 UL DROPS WERE MANUALLY DISPENSED UNDER PARAFFIN OIL USING A GILSON MICRO PIPPETTE. OVER 20 IDENTICAL DROPS WERE SET UP AND, WITHIN A WEEK, SINGLE CRYSTALS TYPICALLY MEASURING 0.5 X 0.4 X 0.3 MM WERE OBTAINED IN MOST OF THE DROPS. CRYSTALLISATION TOOK PLACE AT A TEMPERATURE OF 18 - 20 C., drops under paraffin oil, temperature 291K
|
Resolution 1.80 Å R-free 0.206 |
| 1BWJ THE 1.8 A STRUCTURE OF MICROGRAVITY GROWN TETRAGONAL HEN EGG WHITE LYSOZYME Deposited 1998-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
microgravity experiment；pH 4.7；293 K；CRYSTALLISATION TOOK PLACE IN THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE SHUTTLE'S LIFE AND MICROGRAVITY SPACELAB (LMS) MISSION (STS-78). A SOLUTION OF 21 MG OF HEN EGG WHITE LYSOZYME (3 X CRYSTALLIZED, DIALYSED AND LYOPHILIZED POWDER OF CHICKEN EGG WHITE LYSOZYME SUPPLIED BY SIGMA, L-6876 BATCH NUMBER, LOT 53H7145) DISSOLVED IN 250 UL 0.04 M ACETATE BUFFER (PH 4.7) WAS USED TO FILL THE PROTEIN CHAMBER (188 UL). THE SALT CHAMBERS (541 UL) WERE FILLED WITH 1.35 M NACL AND THE BUFFER CHAMBER (59 UL) WITH 0.04 M ACETATE BUFFER (PH 4.7). SODIUM AZIDE WAS ALSO ADDED TO THE PROTEIN AND BUFFER SOLUTION AS AN ANTI-FUNGAL AGENT (1.92 MG PER 188 UL). CRYSTALLISATION TOOK PLACE AT 20+/-0.1 C., microgravity experiment, temperature 293K
|
Resolution 1.80 Å R-free 0.213 |
| 1C08 CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX Deposited 1999-07-15 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；293 K；HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.175 |
| 1C10 CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF XENON (8 BAR) Deposited 1999-07-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 6 XE XENON × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.5；SODIUM CHLORIDE, PH = 5.5
|
Resolution 2.03 Å |
| 1DPW STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD Deposited 1999-12-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 2 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293 K；2-METHYL-2,4-PENTANEDIOL, TRISHYDROXYMETHYLAMINOMETHANE, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.64 Å R-free 0.222 |
| 1DPX STRUCTURE OF HEN EGG-WHITE LYSOZYME Deposited 1999-12-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；SODIUM ACETATE, SODIUM CHLORIDE, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å R-free 0.246 |
| 1DQJ CRYSTAL STRUCTURE OF THE ANTI-LYSOZYME ANTIBODY HYHEL-63 COMPLEXED WITH HEN EGG WHITE LYSOZYME Deposited 2000-01-04 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；PEG 4K, Ammonium acetate, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.250 |
| 1E8L NMR solution structure of hen lysozyme Deposited 2000-09-27 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 3.8；308 K；Pressure 1
|
Resolution not provided |
| 1F0W CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5 Deposited 2000-05-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 1.90 Å R-free 0.279 |
| 1F10 CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 6.5 AT 88% RELATIVE HUMIDITY Deposited 2000-05-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 1.70 Å R-free 0.268 |
| 1F3J HISTOCOMPATIBILITY ANTIGEN I-AG7 Deposited 2000-06-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 6 PDB declaration: hexameric |
Chain P
29–42（14 aa）
Fragment：RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
Chain Q
29–42（14 aa）
Fragment：RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.4；pH 4.4
|
Resolution 3.10 Å R-free 0.299 |
| 1FDL CRYSTALLOGRAPHIC REFINEMENT OF THE THREE-DIMENSIONAL STRUCTURE OF THE FAB D1.3-LYSOZYME COMPLEX AT 2.5-ANGSTROMS RESOLUTION Deposited 1990-08-27 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å |
| 1FLQ HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE Deposited 2000-08-15 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：G117A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；295 K；sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.80 Å R-free 0.237 |
| 1FLU HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE Deposited 2000-08-15 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：G67A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；295 K；sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.78 Å R-free 0.250 |
| 1FLW HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE Deposited 2000-08-15 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：G71A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；295 K；sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.81 Å R-free 0.231 |
| 1FLY HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE Deposited 2000-08-15 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：G102A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；295 K；sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.83 Å R-free 0.232 |
| 1FN5 HEN EGG WHITE LYSOZYME MUTANT WITH ALANINE SUBSTITUTED FOR GLYCINE Deposited 2000-08-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：G49A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；295 K；sodium chloride, sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.78 Å R-free 0.229 |
| 1G7H CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3(VLW92A) Deposited 2000-11-10 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.85 Å |
| 1G7I CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92F) Deposited 2000-11-10 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；15-18%poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.248 |
| 1G7J CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92H) Deposited 2000-11-10 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.75 Å R-free 0.229 |
| 1G7L CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92S) Deposited 2000-11-10 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；15-18% poly(ethylene glycol) 8000; 0.1 M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.240 |
| 1G7M CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3 (VLW92V) Deposited 2000-11-10 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；14% poly(ethylene glycol) 8000; 0.1 M sodium acetate; 0.05 M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.226 |
| 1GPQ Structure of ivy complexed with its target, HEWL Deposited 2001-11-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain C
19–147（129 aa）
Chain D
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9；15% PEG 4000, 5% GLYCEROL, CHES BUFFER 0.1M PH 9.0, PROTEIN CONCENTRATION: 5MG.ML-1
|
Resolution 1.60 Å R-free 0.212 |
| 1GWD Tri-iodide derivative of hen egg-white lysozyme Deposited 2002-03-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 5 EDO 1,2-ETHANEDIOL × 2 CMO CARBON MONOXIDE × 1 CL CHLORIDE ION × 7 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；2M NACL, 0.025M SODIUM ACETATE AT PH4.7,0.1% SODIUM AZIDE, 25% ETHYLENE GLYCOL AND THEN SOAKED IN AN EQUIVALENT SOLUTION WITH 50MM KI/50MM I2., pH 4.70
|
Resolution 1.77 Å R-free 0.211 |
| 1GXV Solution structure of lysozyme at low and high pressure Deposited 2002-04-12 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain 2
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 2；298 K；Ionic strength (raw mmCIF value) 0.1；Pressure 1
|
Resolution not provided |
| 1GXX Solution structure of lysozyme at low and high pressure Deposited 2002-04-15 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 2；298 K；Ionic strength (raw mmCIF value) 0.1；Pressure 2000
|
Resolution not provided |
| 1H6M Covalent glycosyl-enzyme intermediate of hen egg white lysozyme Deposited 2001-06-19 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：YES | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；289 K；CRYSTALS OF THE HEWL COVALENT INTERMEDIATE WERE GROWN BY THE HANGING-DROPLET VAPOUR DIFFUSION METHOD OVER 4 DAYS AT 16 C. THE DROPLET CONTAINED 2.5 UL OF A SOLUTION OF 7.5 MG/ML HEWL(E35Q), 20 MM NAG2FGLCF, 200 MM SODIUM ACETATE (NAOAC) BUFFER PH 5.0 AND 2.5 UL OF RESERVOIR SOLUTION (200MM) NAOAC, CONTAINING 4.0 % NACL (W/V), PH 4.5 WAS SUSPENDED OVER THE RESERVOIR SOLUTION.
|
Resolution 1.64 Å R-free 0.222 |
| 1H87 Gadolinium derivative of tetragonal Hen Egg-White Lysozyme at 1.7 A resolution Deposited 2001-01-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 CL CHLORIDE ION × 4 GD GADOLINIUM ATOM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；NACL 0.8 M, SODIUM ACETATE 50 MM, PH4.5, GD-HP-DO3A 100MM, [PROT]=40 MG/ML, 293 K, pH 4.50
|
Resolution 1.72 Å R-free 0.210 |
| 1HC0 structure of lysozyme with periodate Deposited 2001-04-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 10 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；SOAKED AT PERIODATE, pH 4.50
|
Resolution 1.82 Å |
| 1HEL STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1HEM STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HEN STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HEO STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HEP STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HEQ STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HER STRUCTURAL AND THERMODYNAMIC ANALYSIS OF COMPENSATING MUTATIONS WITHIN THE CORE OF CHICKEN EGG WHITE LYSOZYME Deposited 1992-01-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1HEW REFINEMENT OF AN ENZYME COMPLEX WITH INHIBITOR BOUND AT PARTIAL OCCUPANCY. HEN EGG-WHITE LYSOZYME AND TRI-N-ACETYLCHITOTRIOSE AT 1.75 ANGSTROMS RESOLUTION Deposited 1992-01-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.75 Å |
| 1HF4 STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS Deposited 2000-11-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；CRYSTALS OF NITRATE-LYSOZYME WERE GROWN UNDER A MICRO GRAVITY ENVIRONMENT DURING THE USML-2 MISSION LAUNCHED ON OCTOBER 1995 (SHUTTLE COLUMBIA). THE CRYSTALLIZATION SETUP WAS THE APCF DEVELOPPED BY EUROPEAN SPACE AGENCY. PROTEIN CONCENTRATION 10 MG/ML IN 50 MM SODIUM ACETATE BUFFER AT PH 4.5. GRADIENT CONCENTRATION APPLIED FROM 0 TO FINAL 290 MM AT 293K
|
Resolution 1.45 Å R-free 0.256 |
| 1HF4 STRUCTURAL EFFECTS OF MONOVALENT ANIONS ON POLYMORPHIC LYSOZYME CRYSTALS Deposited 2000-11-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 NO3 NITRATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；CRYSTALS OF NITRATE-LYSOZYME WERE GROWN UNDER A MICRO GRAVITY ENVIRONMENT DURING THE USML-2 MISSION LAUNCHED ON OCTOBER 1995 (SHUTTLE COLUMBIA). THE CRYSTALLIZATION SETUP WAS THE APCF DEVELOPPED BY EUROPEAN SPACE AGENCY. PROTEIN CONCENTRATION 10 MG/ML IN 50 MM SODIUM ACETATE BUFFER AT PH 4.5. GRADIENT CONCENTRATION APPLIED FROM 0 TO FINAL 290 MM AT 293K
|
Resolution 1.45 Å R-free 0.256 |
| 1HSW LYSOZYME (MUCOPEPTIDE N-ACETYLMURAMYL HYDROLASE) Deposited 1998-06-04 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9.6；pH 9.6
|
Resolution 2.00 Å R-free 0.291 |
| 1HSX LYSOZYME GROWN AT BASIC PH AND ITS LOW HUMIDITY VARIANT Deposited 1998-06-04 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 9.6；pH 9.6
|
Resolution 1.90 Å R-free 0.267 |
| 1IC4 CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX Deposited 2001-03-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；293 K；HEPES, MPD, PEG6000, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.50 Å R-free 0.279 |
| 1IC5 CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX Deposited 2001-03-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；293 K；HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.252 |
| 1IC7 CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX Deposited 2001-03-30 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；293 K；HEPES, PEG6000, MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.230 |
| 1IEE STRUCTURE OF TETRAGONAL HEN EGG WHITE LYSOZYME AT 0.94 A FROM CRYSTALS GROWN BY THE COUNTER-DIFFUSION METHOD Deposited 2001-04-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Counter-Diffusion in modified APCF reactors；pH 4.5；293 K；CRYSTALLISATION TOOK PLACE IN
THE EUROPEAN SPACE AGENCY (ESA) ADVANCED PROTEIN
CRYSTALLISATION FACILITY (APCF) ONBOARD THE NASA SPACE
SHUTTLE'S STS-95 MISSION. A NEW APCF REACTOR WITH A LONG
PROTEIN CHAMBER (67 MM) WAS DESIGNED TO PERFORM
CRYSTALLIZATION USING THE COUNTER-DIFFUSION METHOD UNDER
MICROGRAVITY CONDITIONS. THE PROTEIN CHAMBER WAS FILLED
WITH A SOLUTION OF 99 MG/ML OF HEN EGG WHITE LYSOZYME
(SUPPLIED BY SEIKAGAKU, BATCH NUMBER 100940, LOT E96302)
DISSOLVED IN 0.05 M ACETATE BUFFER (PH 4.5). THE SALT
CHAMBER CONTAINED 20% W/V NACL AND 0.05 M ACETATE BUFFER
(PH 4.5). THE ROTATORY PLUG CONNECTING THE PROTEIN AND
THE SALT CHAMBERS WAS FILLED WITH 10% W/V NACL, 0.5% W/V
AGAROSE GEL AND 0.05 M ACETATE BUFFER. CRYSTALLISATION
TOOK PLACE IN MICROGRAVITY AT 20+/-0.1 C., Counter-Diffusion in modified APCF reactors, temperature 293K
|
Resolution 0.94 Å R-free 0.151 |
| 1IO5 HYDROGEN AND HYDRATION OF HEN EGG-WHITE LYSOZYME DETERMINED BY NEUTRON DIFFRACTION Deposited 2001-01-14 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
NEUTRON DIFFRACTION
X-ray crystallization conditions
concentration gradient method；pH 7；291 K；NiCl2, pH 7.0, concentration gradient method, temperature 291K
|
Resolution 2.00 Å R-free 0.323 |
| 1IOQ STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION Deposited 2001-03-28 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：M12F/L56F | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, Na-acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.79 Å |
| 1IOR STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION Deposited 2001-03-28 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：M12L/L56F | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, Na-acetete, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.76 Å |
| 1IOS STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION Deposited 2001-03-28 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：M12F | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, Na-acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.76 Å |
| 1IOT STABILIZATION OF HEN EGG WHITE LYSOZYME BY A CAVITY-FILLING MUTATION Deposited 2001-03-28 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：M12L | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, Na-acetete, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.75 Å |
| 1IR7 IM mutant of lysozyme Deposited 2001-09-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：I78M | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å |
| 1IR8 IM mutant of lysozyme Deposited 2001-09-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：I58M | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.63 Å |
| 1IR9 IM mutant of lysozyme Deposited 2001-09-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：I98M | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；296 K；NaCl, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å |
| 1J1O Crystal Structure of HyHEL-10 Fv mutant LY50F complexed with hen egg white lysozyme Deposited 2002-12-13 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.215 |
| 1J1P Crystal structure of HyHEL-10 Fv mutant LS91A complexed with hen egg white lysozyme Deposited 2002-12-13 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.212 |
| 1J1X Crystal Structure of HyHEL-10 Fv mutant LS93A complexed with hen egg white lysozyme Deposited 2002-12-20 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.217 |
| 1JA2 BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2001-05-29 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation；pH 4.8；296 K；rapid precipitation from 0.5M NACL IN PH 5.0 0.05M KHPHTHALATE/NAOH BUFFER, at 296K, pH 4.8
|
Resolution 2.87 Å |
| 1JA4 BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2001-05-29 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation；pH 4.8；296 K；rapid precipitation from 0.5M NACL IN PH 5.0 0.05M KHPHTHALATE/NAOH BUFFER, at 296K, pH 4.8
|
Resolution 2.94 Å |
| 1JA6 BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2001-05-29 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation；pH 5.2；296 K；rapid precipitation from 0.5M NACL IN PH 6.0 0.05M NA2HPO4/KH2PO4 BUFFER, at 296K, pH 5.2
|
Resolution 2.96 Å |
| 1JA7 BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2001-05-29 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
POWDER DIFFRACTION
X-ray crystallization conditions
precipitation；pH 5.1；296 K；rapid precipitation from 0.5M NACL IN PH 6.0 0.05M NA2HPO4/KH2PO4 BUFFER, at 296K, pH 5.1
|
Resolution 2.98 Å |
| 1JIS CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN AT PH 4.6 Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.234 |
| 1JIT CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE 30% TREHALOSE Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, 30% trehalose, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.225 |
| 1JIY CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE 20% SORBITOL Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, 20% sorbitol, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.212 |
| 1JJ0 CRYSTAL STRUCTURE OF TETRAGONAL LYSOZYME GROWN IN PRESENCE of 30% SUCROSE Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, 30% sucrose, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.233 |
| 1JJ1 CRYSTAL STRUCTURE OF ORTHORHOMBIC LYSOZYME GROWN AT PH 4.6 IN PRESENCE OF 5% SORBITOL Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, 5% sorbitol, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.223 |
| 1JJ3 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.207 |
| 1JJ3 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2001-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Na-acetate buffer, pH 4.6, 10% NaCl, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.207 |
| 1JPO LOW TEMPERATURE ORTHORHOMBIC LYSOZYME Deposited 1997-07-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 1JTO Degenerate interfaces in antigen-antibody complexes Deposited 2001-08-21 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
Fragment：Enzyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；300 K；PEG 8000, potassium phosphate, , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.50 Å R-free 0.240 |
| 1JTO Degenerate interfaces in antigen-antibody complexes Deposited 2001-08-21 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
Fragment：Enzyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；300 K；PEG 8000, potassium phosphate, , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.50 Å R-free 0.240 |
| 1JTT Degenerate interfaces in antigen-antibody complexes Deposited 2001-08-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–138（120 aa）
Fragment：Enzyme
|
Not recorded | NA SODIUM ION × 6 FMT FORMIC ACID × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；300 K；2M NaFormate, 100mM Na Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.10 Å R-free 0.204 |
| 1JTT Degenerate interfaces in antigen-antibody complexes Deposited 2001-08-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–138（120 aa）
Fragment：Enzyme
|
Not recorded | NA SODIUM ION × 6 FMT FORMIC ACID × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；300 K；2M NaFormate, 100mM Na Citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.10 Å R-free 0.204 |
| 1KIP FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME Deposited 1996-10-23 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
FREE TEXT GOES HERE.
|
Resolution 2.10 Å |
| 1KIQ FV MUTANT Y(B 101)F (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME Deposited 1996-10-23 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.85 Å |
| 1KIR FV MUTANT Y(A 50)S (VL DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME Deposited 1996-10-23 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1KXW ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-22 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：N27D | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.96 Å |
| 1KXX ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-22 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：D18N, N27D | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.71 Å |
| 1KXY ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-22 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：D18N | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.79 Å |
| 1LCN Monoclinic hen egg white lysozyme, thiocyanate complex Deposited 1998-10-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | SCN THIOCYANATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5；KSCN 190MM BUFFER CH3COOK 50MM, PH=5, pH 5.0
|
Resolution 1.63 Å R-free 0.237 |
| 1LCN Monoclinic hen egg white lysozyme, thiocyanate complex Deposited 1998-10-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | SCN THIOCYANATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5；KSCN 190MM BUFFER CH3COOK 50MM, PH=5, pH 5.0
|
Resolution 1.63 Å R-free 0.237 |
| 1LJ3 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2002-04-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；298 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 298K
|
Resolution 2.00 Å R-free 0.233 |
| 1LJ3 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2002-04-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；298 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 298K
|
Resolution 2.00 Å R-free 0.233 |
| 1LJ4 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2002-04-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 1.95 Å R-free 0.230 |
| 1LJ4 CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN AT PH 4.6 Deposited 2002-04-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 1.95 Å R-free 0.230 |
| 1LJE CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive, pH 4.6, LIQUID DIFFUSION at 298K, temperature 293K
|
Resolution 2.00 Å R-free 0.212 |
| 1LJE CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive, pH 4.6, LIQUID DIFFUSION at 298K, temperature 293K
|
Resolution 2.00 Å R-free 0.212 |
| 1LJF CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å R-free 0.227 |
| 1LJF CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% SUCROSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) - Precipitant,
Sucrose (0.29M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å R-free 0.227 |
| 1LJG CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
glycerol(0.54M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.243 |
| 1LJG CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
glycerol(0.54M) - Additive; pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.90 Å R-free 0.243 |
| 1LJH CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant, glycerol(0.54M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å R-free 0.226 |
| 1LJH CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 5% GLYCEROL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant, glycerol(0.54M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 1.80 Å R-free 0.226 |
| 1LJI CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE 10% SORBITOL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å R-free 0.232 |
| 1LJI CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE 10% SORBITOL Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) Buffer, Sodium Nitrate (0.44M) Precipitant, pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å R-free 0.232 |
| 1LJJ CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% TREHALOSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) -
Precipitant, Trehalose(0.29M) - Additive; pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å R-free 0.213 |
| 1LJJ CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 10% TREHALOSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate (0.1M) - Buffer, Sodium Nitrate (0.44M) -
Precipitant, Trehalose(0.29M) - Additive; pH 4.6,
LIQUID DIFFUSION at 293K
|
Resolution 2.00 Å R-free 0.213 |
| 1LJK CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 15% TREHALOSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
Trehalose(0.44M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 2.10 Å R-free 0.219 |
| 1LJK CRYSTAL STRUCTURE OF MONOCLINIC LYSOZYME GROWN IN PRESENCE OF 15% TREHALOSE Deposited 2002-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；293 K；Sodium Acetate(0.1M)-Buffer, Sodium Nitrate (0.44M)-Precipitant,
Trehalose(0.44M) - Additive, pH 4.6, LIQUID DIFFUSION at 293K
|
Resolution 2.10 Å R-free 0.219 |
| 1LKR MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE Deposited 1998-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 11 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；1% PROTEIN, 200 MMOLAR ACETATE BUFFER, PH 8, 5% SODIUM IODIDE, pH 8.0
|
Resolution 1.60 Å R-free 0.140 |
| 1LKR MONOCLINIC HEN EGG WHITE LYSOZYME IODIDE Deposited 1998-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；1% PROTEIN, 200 MMOLAR ACETATE BUFFER, PH 8, 5% SODIUM IODIDE, pH 8.0
|
Resolution 1.60 Å R-free 0.140 |
| 1LKS HEN EGG WHITE LYSOZYME NITRATE Deposited 1997-10-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
THE CRYSTALS WERE GROWN IN THE PRESENCE OF BROMO PHENYL BLUE (BPB), AND THE CRYSTALS WERE DARK BLUE, ALMOST BLACK. HOWEVER, NO RELIABLE TRACE OF THE BPB WAS FOUND.
|
Resolution 1.10 Å |
| 1LMA PROTEIN HYDRATION AND WATER STRUCTURE: X-RAY ANALYSIS OF A CLOSELY PACKED PROTEIN CRYSTAL WITH VERY LOW SOLVENT CONTENT Deposited 1992-08-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.75 Å |
| 1LPI HEW LYSOZYME: TRP...NA CATION-PI INTERACTION Deposited 1998-04-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；PROTEIN WAS CRYSTALLIZED FROM 2% NANO3, IN A 100 MM SODIUM ACETATE BUFFER, PH 4.6; THE PROTEIN STOCK SOLUTION CONTAINED 20 MG/ML
|
Resolution 2.00 Å R-free 0.269 |
| 1LSA THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSB THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSC THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSD THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSE THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSF THE INFLUENCE OF TEMPERATURE ON LYSOZYME CRYSTALS. STRUCTURE AND DYNAMICS OF PROTEIN AND WATER Deposited 1994-07-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSG THREE-DIMENSIONAL STRUCTURE OF THE PLATELET INTEGRIN RECOGNITION SEGMENT OF THE FIBRINOGEN GAMMA CHAIN OBTAINED BY CARRIER PROTEIN-DRIVEN CRYSTALLIZATION Deposited 1994-10-25 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.40 Å R-free 0.328 |
| 1LSM THERMAL STABILITY DETERMINANTS OF CHICKEN EGG-WHITE LYSOZYME CORE MUTANTS: HYDROPHOBICITY, PACKING VOLUME AND CONSERVED BURIED WATER MOLECULES Deposited 1994-09-13 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 1LSN THERMAL STABILITY DETERMINANTS OF CHICKEN EGG-WHITE LYSOZYME CORE MUTANTS: HYDROPHOBICITY, PACKING VOLUME AND CONSERVED BURIED WATER MOLECULES Deposited 1994-09-13 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 1LSY CRYSTAL STRUCTURE OF THE MUTANT D52S HEN EGG WHITE LYSOZYME WITH AN OLIGOSACCHARIDE PRODUCT Deposited 1994-09-27 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 1LSZ CRYSTAL STRUCTURE OF THE MUTANT D52S HEN EGG WHITE LYSOZYME WITH AN OLIGOSACCHARIDE PRODUCT Deposited 1994-09-27 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1LYO CROSS-LINKED LYSOZYME CRYSTAL IN NEAT WATER Deposited 1998-03-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å R-free 0.214 |
| 1LYS X-RAY STRUCTURE OF A MONOCLINIC FORM OF HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT 313K. COMPARISON OF TWO INDEPENDENT MOLECULES Deposited 1993-12-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.72 Å |
| 1LYS X-RAY STRUCTURE OF A MONOCLINIC FORM OF HEN EGG-WHITE LYSOZYME CRYSTALLIZED AT 313K. COMPARISON OF TWO INDEPENDENT MOLECULES Deposited 1993-12-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.72 Å |
| 1LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1LZ8 LYSOZYME PHASED ON ANOMALOUS SIGNAL OF SULFURS AND CHLORINES Deposited 1999-03-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；BATCH METHOD. 20 MG/ML PROTEIN SOLUTION IN 50MM SODIUM ACETATE PH 4.6 AND 10%
NACL. CRYSTALS GROWN AT ROOM TEMPERATURE.
|
Resolution 1.53 Å R-free 0.310 |
| 1LZ9 ANOMALOUS SIGNAL OF SOLVENT BROMINES USED FOR PHASING OF LYSOZYME Deposited 1999-03-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；CRYSTALLIZED IN HANGING DROPS. 15 MG/ML PROTEIN SOLUTION IN 100 MM SODIUM
ACETATE PH 4.6 AND 1 M SODIUM BROMIDE.
|
Resolution 1.70 Å R-free 0.290 |
| 1LZA DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.60 Å |
| 1LZB DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.50 Å |
| 1LZC DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1LZD DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1LZE DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1LZG DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY Deposited 1995-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1LZH THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION. Deposited 1981-06-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 6.00 Å |
| 1LZH THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION. Deposited 1981-06-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 6.00 Å |
| 1LZN NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME Deposited 1999-03-23 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 5 NA SODIUM ION × 1 |
NEUTRON DIFFRACTION
X-ray crystallization conditions
pH 4.7；BATCH TECHNIQUE EQUAL AMOUNT OF 1.0 % SOLUTION OF HEN EGG-WHITE LYSOZYME (
BOEHRINGER) AND 2.8 % NANO3 IN 50 MM ACETATE BUFFER (PH 4.7)
|
Resolution 1.70 Å R-free 0.221 |
| 1LZT REFINEMENT OF TRICLINIC LYSOZYME Deposited 1985-04-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.97 Å |
| 1MEL CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME Deposited 1996-06-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；HANGING DROP, pH 6.4, vapor diffusion - hanging drop
|
Resolution 2.50 Å R-free 0.323 |
| 1MEL CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY FRAGMENT IN COMPLEX WITH LYSOZYME Deposited 1996-06-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；HANGING DROP, pH 6.4, vapor diffusion - hanging drop
|
Resolution 2.50 Å R-free 0.323 |
| 1MLC MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME COMPLEXED WITH LYSOZYME Deposited 1995-03-10 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain E
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å R-free 0.282 |
| 1MLC MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME COMPLEXED WITH LYSOZYME Deposited 1995-03-10 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å R-free 0.282 |
| 1N4F Para-Arsanilate Derivative of Hen Egg-White Lysozyme Deposited 2002-10-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ASR 4-AMINOPHENYLARSONIC ACID × 3 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；291 K；250 mM sodium para-arsanilate then transferred to equivalent solution plus 15% V/V ethyleneglycol, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.78 Å R-free 0.213 |
| 1NBY Crystal Structure of HyHEL-63 complexed with HEL mutant K96A Deposited 2002-12-04 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：K96A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；PEG 4000, AMMONIUM ACETATE, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.80 Å R-free 0.250 |
| 1NBZ Crystal Structure of HyHEL-63 complexed with HEL mutant K97A Deposited 2002-12-04 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；PEG 4000, AMMONIUM ACETATE, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.85 Å R-free 0.229 |
| 1NDG Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme Deposited 2002-12-09 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：R61A | ACY ACETIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.249 |
| 1NDM Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme Deposited 2002-12-09 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：R61A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.10 Å R-free 0.258 |
| 1P2C crystal structure analysis of an anti-lysozyme antibody Deposited 2003-04-15 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.6；298 K；PEG 1000, CaCl2, pH 4.6, vapor diffusion, temperature 298.K
|
Resolution 2.00 Å R-free 0.242 |
| 1P2C crystal structure analysis of an anti-lysozyme antibody Deposited 2003-04-15 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.6；298 K；PEG 1000, CaCl2, pH 4.6, vapor diffusion, temperature 298.K
|
Resolution 2.00 Å R-free 0.242 |
| 1PS5 STRUCTURE OF THE MONOCLINIC C2 FORM OF HEN EGG-WHITE LYSOZYME AT 2.0 ANGSTROMS RESOLUTION Deposited 2003-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；313 K；2 M Lithium Sulfate, 8% MPD , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 313K
|
Resolution 2.00 Å R-free 0.250 |
| 1QIO SPECIFIC CHEMICAL AND STRUCTURAL DAMAGE CAUSED BY INTENSE SYNCHROTRON RADIATION TO HEN EGG WHITE LYSOZYME Deposited 1999-06-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；CRYSTALLIZED FROM 2-6% NACL, 0.2 M SODIUM ACETATE PH 4.7.
|
Resolution 1.20 Å R-free 0.188 |
| 1QTK CRYSTAL STRUCTURE OF HEW LYSOZYME UNDER PRESSURE OF KRYPTON (55 BAR) Deposited 1999-06-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 KR KRYPTON × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；290 K；Sodium chloride , pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 290.0K
|
Resolution 2.03 Å R-free 0.216 |
| 1RCM CRYSTAL STRUCTURE OF A UBIQUITIN-DEPENDENT DEGRADATION SUBSTRATE: A THREE-DISULFIDE FORM OF LYSOZYME Deposited 1993-01-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACY ACETIC ACID × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 1RCM CRYSTAL STRUCTURE OF A UBIQUITIN-DEPENDENT DEGRADATION SUBSTRATE: A THREE-DISULFIDE FORM OF LYSOZYME Deposited 1993-01-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | ACY ACETIC ACID × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 1RFP ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-14 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.75 Å |
| 1RI8 Crystal Structure of the Camelid Single Domain Antibody 1D2L19 in complex with Hen Egg White Lysozyme Deposited 2003-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；PEG 4000, lithium sulphate, Tris-HCl, glycerol, sodium chloride, potassium phosphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.85 Å R-free 0.196 |
| 1RJC Crystal structure of the camelid single domain antibody cAb-Lys2 in complex with hen egg white lysozyme Deposited 2003-11-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；298 K；PEG 8000, glycerol, ammonium sulphate, potassium phosphate, sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å R-free 0.235 |
| 1SF4 BINDING OF N,N'-DIACETYLCHITOBIOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2004-02-19 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation；pH 6；298 K；NaCl, Na2HPO4, KH2PO4, N.N'-diacetylchitobiose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 2.98 Å |
| 1SF6 BINDING OF N,N',N"-TRIACETYLCHITOTRIOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2004-02-19 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | POWDER DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.22 Å |
| 1SF7 BINDING OF TETRA-N-ACETYLCHITOTETRAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2004-02-19 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation；pH 6；298 K；NaCl, Na2HPO4, KH2PO4, tetra-N-acetylchitotetraose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å |
| 1SFB BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY Deposited 2004-02-19 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation；pH 6；298 K；NaCl, Na2HPO4, KH2PO4, penta-N-acetylchitopentaose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å |
| 1SFG BINDING OF HEXA-N-ACETYLCHITOHEXAOSE: A POWDER DIFFRACTION STUDY Deposited 2004-02-19 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
rapid precipitation；pH 6；298 K；NaCl, Na2HPO4, KH2PO4, hexa-N-acetylchitohexaose, pH 6.0, rapid precipitation, temperature 298K
|
Resolution 3.22 Å |
| 1SQ2 Crystal Structure Analysis of the Nurse Shark New Antigen Receptor (NAR) Variable Domain in Complex With Lysozyme Deposited 2004-03-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；295 K；15% PEG 10,000, 0.1M imidazole HCl, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295.0K
|
Resolution 1.45 Å R-free 0.225 |
| 1T3P Half-sandwich arene ruthenium(II)-enzyme complex Deposited 2004-04-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；277 K；NaCl, Na acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å R-free 0.217 |
| 1T6V Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme Deposited 2004-05-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；295 K；15% PEG 10,000, 0.1M imidazole malate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.70 Å R-free 0.221 |
| 1T6V Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme Deposited 2004-05-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；295 K；15% PEG 10,000, 0.1M imidazole malate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.70 Å R-free 0.221 |
| 1UA6 Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex Deposited 2003-02-28 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 8000, ETHYLENE GLYCOL, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.90 Å R-free 0.265 |
| 1UC0 Crystal structure of wild-type hen-egg white lysozyme singly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine Deposited 2003-04-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；298 K；sodium acetate, sodium chloride, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 1.85 Å R-free 0.254 |
| 1UCO HEN EGG-WHITE LYSOZYME, LOW HUMIDITY FORM Deposited 1995-12-31 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1UCO HEN EGG-WHITE LYSOZYME, LOW HUMIDITY FORM Deposited 1995-12-31 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1UIA ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：DEL(14,15) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.76 Å |
| 1UIB ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：DEL(14,15) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.76 Å |
| 1UIC ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：H15A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å |
| 1UID ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：H15F | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 1.8 M NACL
|
Resolution 1.95 Å |
| 1UIE ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：H15G | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å |
| 1UIF ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：H15V | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.85 Å |
| 1UIG ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.95 Å |
| 1UIH ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS Deposited 1996-11-26 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL
|
Resolution 1.75 Å |
| 1UUZ IVY:A NEW FAMILY OF PROTEIN Deposited 2004-01-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；20% POLYETHYLENEGLYCOL 4000, IMIDAZOLE/MALATE 0.2M PH 6.0, 5% GLYCEROL
|
Resolution 1.80 Å R-free 0.250 |
| 1UUZ IVY:A NEW FAMILY OF PROTEIN Deposited 2004-01-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；20% POLYETHYLENEGLYCOL 4000, IMIDAZOLE/MALATE 0.2M PH 6.0, 5% GLYCEROL
|
Resolution 1.80 Å R-free 0.250 |
| 1V7S Triclinic hen lysozyme crystallized at 313K from a D2O solution Deposited 2003-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION, RECRYSTALLIZATION；pH 4.5；313 K；sodium nitrate, sodium acetate, pH 4.5, EVAPORATION, RECRYSTALLIZATION, temperature 313K
|
Resolution 1.14 Å R-free 0.120 |
| 1V7T Triclinic lysozyme with low solvent content obtained by phase transition Deposited 2003-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；313 K；sodium nitrate, sodium acetate, pH 4.5, phase transition, temperature 313K
|
Resolution 1.13 Å R-free 0.162 |
| 1V7T Triclinic lysozyme with low solvent content obtained by phase transition Deposited 2003-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；313 K；sodium nitrate, sodium acetate, pH 4.5, phase transition, temperature 313K
|
Resolution 1.13 Å R-free 0.162 |
| 1VAT Iodine derivative of hen egg-white lysozyme Deposited 2004-02-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；293 K；50mg/ml HEWL, 20%(w/v) PEG4000, 100mM sodium citrate (pH 5.5), 100mM sodium iodide, and 20%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.60 Å R-free 0.232 |
| 1VAU Xenon derivative of hen egg-white lysozyme Deposited 2004-02-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 XE XENON × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；50mg/ml HEWL, 1.8M NaCl, 100mM sodium citrate (pH 4.5), 30%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.203 |
| 1VDP The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space Deposited 2004-03-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å R-free 0.221 |
| 1VDP The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space Deposited 2004-03-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å R-free 0.221 |
| 1VDQ The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution Deposited 2004-03-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；batch method
|
Resolution 1.50 Å R-free 0.202 |
| 1VDS The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space Deposited 2004-03-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.60 Å R-free 0.219 |
| 1VDT The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space Deposited 2004-03-24 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å R-free 0.201 |
| 1VED The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space Deposited 2004-03-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å R-free 0.220 |
| 1VFB BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION Deposited 1993-12-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1W6Z High Energy Tetragonal Lysozyme X-ray Structure Deposited 2004-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | HO3 HOLMIUM (III) ATOM × 3 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；HANGING DROP METHOD, 0.3M HOCL3, 0.9M NACL, 0.05M SODIUM ACETATE PH4.5, pH 4.50
|
Resolution 1.65 Å R-free 0.226 |
| 1WTM X-ray structure of HEW Lysozyme Orthorhombic Crystal formed in the Earth's magnetic field Deposited 2004-11-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
in the Earth's magnetic field；pH 4.5；313 K；NaCl, sodium acetate, pH 4.5, in the Earth's magnetic field, temperature 313K
|
Resolution 1.33 Å R-free 0.201 |
| 1WTN The structure of HEW Lysozyme Orthorhombic Crystal Growth under a High Magnetic Field Deposited 2004-11-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
under a High Magnetic Field of 10T；pH 4.5；313 K；NaCl, sodium acetate, pH 4.5, under a High Magnetic Field of 10T, temperature 313K
|
Resolution 1.13 Å R-free 0.200 |
| 1XEI THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION Deposited 1998-01-16 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；pH 4.6
|
Resolution 2.10 Å R-free 0.265 |
| 1XEJ THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION Deposited 1998-01-16 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；pH 4.6
|
Resolution 2.10 Å R-free 0.283 |
| 1XEK THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION Deposited 1998-01-16 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；pH 4.6
|
Resolution 2.30 Å R-free 0.304 |
| 1XFP Crystal structure of the CDR2 germline reversion mutant of cAb-Lys3 in complex with hen egg white lysozyme Deposited 2004-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | FMT FORMIC ACID × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；Sodium Formate, sodium-HEPES, sodium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.216 |
| 1XGP Structure for antibody HyHEL-63 Y33A mutant complexed with hen egg lysozyme Deposited 2004-09-17 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å R-free 0.271 |
| 1XGQ Structure for antibody HyHEL-63 Y33V mutant complexed with hen egg lysozyme Deposited 2004-09-17 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å R-free 0.277 |
| 1YIK Structure of Hen egg white lysozyme soaked with Cu-cyclam Deposited 2005-01-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 3 MM1 1,4,8,11-TETRAAZA-CYCLOTETRADECANE CU(II) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；277 K；Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K
|
Resolution 1.75 Å R-free 0.233 |
| 1YIL Structure of Hen egg white lysozyme soaked with Cu2-Xylylbicyclam Deposited 2005-01-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 MM2 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZA-CYCLOTETRADECANE]CU(II)2 × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；277 K；Acetate buffer, NaCl , pH 4.5, VAPOR DIFFUSION, temperature 277K
|
Resolution 1.60 Å R-free 0.223 |
| 1YKX Effect of alcohols on protein hydration Deposited 2005-01-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 EOH ETHANOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium chloride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.207 |
| 1YKY Effect of alcohols on protein hydration Deposited 2005-01-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 1BO 1-BUTANOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium chloride and sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.222 |
| 1YKZ Effect of alcohols on protein hydration Deposited 2005-01-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 PTL PENTANAL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium choride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.225 |
| 1YL0 Effect of alcohols on protein hydration Deposited 2005-01-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 IPA ISOPROPYL ALCOHOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium chloride, sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.233 |
| 1YL1 Effect of alcohols on protein hydration Deposited 2005-01-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ETF TRIFLUOROETHANOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium chloride, sodium acetate bufferbuffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.251 |
| 1YQV The crystal structure of the antibody Fab HyHEL5 complex with lysozyme at 1.7A resolution Deposited 2005-02-02 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å R-free 0.234 |
| 1Z55 Effect of alcohols on protein hydration Deposited 2005-03-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；sodium chloride, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 1.90 Å R-free 0.256 |
| 1ZMY cAbBCII-10 VHH framework with CDR loops of cAbLys3 grafted on it and in complex with hen egg white lysozyme Deposited 2005-05-11 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.254 |
| 1ZMY cAbBCII-10 VHH framework with CDR loops of cAbLys3 grafted on it and in complex with hen egg white lysozyme Deposited 2005-05-11 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain M
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.254 |
| 1ZV5 Crystal structure of the variable domain of the camelid heavy-chain antibody D2-L29 in complex with hen egg white lysozyme Deposited 2005-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；293 K；Ammonium sulphate, PEG 400, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å R-free 0.239 |
| 1ZVH Crystal structure of the VHH domain D2-L24 in complex with hen egg white lysozyme Deposited 2005-06-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；293 K；Ammonium Sulphate, PEG 8000, glycerol, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.234 |
| 1ZVY Crystal structure of the VHH D3-L11 in complex with hen egg white lysozyme Deposited 2005-06-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；293 K；magnesium acetate, sodium cacodylate, PEG 8000, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.63 Å R-free 0.229 |
| 23SI Hen Egg-White Lysozyme (HEWL) complexed with Trans-Ferulic Acid Deposited 2026-02-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | FER 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.50 Å R-free 0.225 |
| 2A6U pH evolution of tetragonal HEWL at 4 degrees Celcius. Deposited 2005-07-04 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | POWDER DIFFRACTION mmCIF provides none of the parsed conditions | Resolution not provided |
| 2A7D On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength Deposited 2005-07-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 XE XENON × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.66 Å R-free 0.202 |
| 2A7F On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength Deposited 2005-07-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.85 Å R-free 0.232 |
| 2AUB Lysozyme structure derived from thin-film-based crystals Deposited 2005-08-27 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å R-free 0.283 |
| 2B5Z Hen lysozyme chemically glycosylated Deposited 2005-09-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BGS (1S)-1,5-anhydro-1-(ethylsulfonyl)-D-glucitol × 4 AZI AZIDE ION × 3 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.9；293 K；Magnesium Sulfate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å R-free 0.225 |
| 2BLX HEWL before a high dose x-ray "burn" Deposited 2005-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PG4 TETRAETHYLENE GLYCOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
30 % PEG 5000 MME,1 M SODIUM CHLORIDE, 50 MM PH 4.5 SODIUM ACETATE
|
Resolution 1.40 Å R-free 0.169 |
| 2BLY HEWL after a high dose x-ray "burn" Deposited 2005-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PG4 TETRAETHYLENE GLYCOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
30 % PEG 5000 MME, 1 M SODIUM CHLORIDE,5 0 MM PH 4.5 SODIUM ACETATE
|
Resolution 1.40 Å R-free 0.170 |
| 2BPU The Kedge Holmium Derivative of Hen Egg-White Lysozyme at high resolution from Single Wavelength Anomalous Diffraction Deposited 2005-04-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 HO HOLMIUM ATOM × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；pH 4.50
|
Resolution 1.35 Å R-free 0.207 |
| 2C8O lysozyme (1sec) and UV lasr excited fluorescence Deposited 2005-12-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；pH 4.50
|
Resolution 1.50 Å R-free 0.208 |
| 2C8P lysozyme (60sec) and UV laser excited fluorescence Deposited 2005-12-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；pH 4.50
|
Resolution 1.50 Å R-free 0.200 |
| 2CDS LYSOZYME Deposited 1999-03-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；pH 7
|
Resolution 2.00 Å R-free 0.224 |
| 2CGI Siras structure of tetragonal lysozyme using derivative data collected at the high energy remote Holmium Kedge Deposited 2006-03-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；pH 4.50
|
Resolution 1.35 Å R-free 0.196 |
| 2D4I Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution Deposited 2005-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 4.5；298 K；1% protein, 2% sodium nitrate, D2O solution with pD 4.5 adjusted with 1M acetic acid, batch method, temperature 298K
|
Resolution 1.16 Å R-free 0.175 |
| 2D4I Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution Deposited 2005-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 4.5；298 K；1% protein, 2% sodium nitrate, D2O solution with pD 4.5 adjusted with 1M acetic acid, batch method, temperature 298K
|
Resolution 1.16 Å R-free 0.175 |
| 2D4J Transformed monoclinic crystal of hen egg-white lysozyme from a heavy water solution Deposited 2005-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
phase transition；pH 4.5；293 K；The crystal was created by the dehydration-induced phase transition of a monoclinic crystal obtained from a heavy water solution at pD 4.5, temperature 293K
|
Resolution 1.16 Å R-free 0.133 |
| 2D4K Monoclinic hen egg-white lysozyme crystallized at 313K Deposited 2005-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 7.6；313 K；2% protein, 10% sodium chloride, 5% 1-propanol, pH 7.6, batch method, temperature 313K
|
Resolution 1.15 Å R-free 0.164 |
| 2D4K Monoclinic hen egg-white lysozyme crystallized at 313K Deposited 2005-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain N
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 7.6；313 K；2% protein, 10% sodium chloride, 5% 1-propanol, pH 7.6, batch method, temperature 313K
|
Resolution 1.15 Å R-free 0.164 |
| 2D6B Novel Bromate Species trapped within a Protein Crystal Deposited 2005-11-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lysozyme
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 202 BROMIC ACID × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.8；273 K；pH 4.8, VAPOR DIFFUSION, temperature 273K
|
Resolution 1.25 Å R-free 0.213 |
| 2D91 Structure of HYPER-VIL-lysozyme Deposited 2005-12-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.3；293 K；2.0M NaCl, 0.1M Na acetate, 30% (v/v) glycerol, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.290 |
| 2DQC Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å R-free 0.223 |
| 2DQD Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å R-free 0.215 |
| 2DQE Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.224 |
| 2DQF Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；AMMONIUM SULFATE, PEG4000, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å R-free 0.268 |
| 2DQF Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；AMMONIUM SULFATE, PEG4000, SODIUM ACETATE, pH 4.60, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.50 Å R-free 0.268 |
| 2DQG Crystal structure of hyhel-10 FV mutant (Hy53f) complexed with hen egg lysozyme Deposited 2006-05-25 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.254 |
| 2DQH Crystal structure of hyhel-10 FV mutant (Hy58a) complexed with hen egg lysozyme Deposited 2006-05-26 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.264 |
| 2DQI Crystal structure of hyhel-10 FV mutant (Ly50a) complexed with hen egg lysozyme Deposited 2006-05-26 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.00 Å R-free 0.257 |
| 2DQJ Crystal structure of hyhel-10 FV (wild-type) complexed with hen egg lysozyme at 1.8A resolution Deposited 2006-05-26 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；HEPES, MPD, PEG6000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å R-free 0.219 |
| 2EIZ Crystal structure of humanized HYHEL-10 fv mutant(HW47Y)-hen lysozyme complex Deposited 2007-03-14 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；293 K；28-31% PEGMME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.90 Å R-free 0.253 |
| 2EKS Crystal structure of humanized HyHEL-10 FV-HEN lysozyme complex Deposited 2007-03-24 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；293 K；28-31% PEGMME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.00 Å R-free 0.265 |
| 2EPE Crystal structure analysis of Hen egg white lysozyme grown by capillary method Deposited 2007-03-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
capillary method；pH 4.7；298 K；0.04m NAOAC/HOAC buffer, pH 4.7, capillary method, temperature 298.0K
|
Resolution 2.50 Å R-free 0.211 |
| 2F2N Triclinic hen egg lysozyme cross-linked by glutaraldehyde Deposited 2005-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；300 K；sodium nitrate, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.60 Å R-free 0.169 |
| 2F30 Triclinic cross-linked Lysozyme soaked with 4.5M urea Deposited 2005-11-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 URE UREA × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；300 K；sodium nitrate as crystallizing agent
cross-linked by vapor diffusion with glutaraldehyde, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.65 Å R-free 0.191 |
| 2F4A Triclinic cross-linked lysozyme soaked with thiourea 1.5M Deposited 2005-11-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 ACT ACETATE ION × 1 TOU THIOUREA × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；300 K；SODIUM NITRATE AS CRYSTALLIZING AGENT CROSS-LINKED BY VAPOR DIFFUSION WITH GLUTARALDEHYDE,
PROTIEN CONCENTRATION 20 MG/ML, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.95 Å R-free 0.161 |
| 2F4G Triclinic cross-linked lysozyme soaked in bromoethanol 1M Deposited 2005-11-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 BRJ 2-BROMOETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；300 K；SODIUM NITRATE AS CRYSTALLIZING AGENT CROSS-LINKED BY VAPOR DIFFUSION WITH GLUTARALDEHYDE, PROTEIN 20 MG/ML, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.65 Å R-free 0.180 |
| 2FBB Crystal Structure Analysis of Hexagonal Lysozyme Deposited 2005-12-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 5 NO3 NITRATE ION × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.4；293 K；10% aqu. acetone solution saturated with sodium nitrate, 25mg/ml lysozyme, pH 8.4, batch, temperature 293.0K, pH 8.40
|
Resolution 1.46 Å R-free 0.198 |
| 2G4P Anomalous substructure of lysozyme at pH 4.5 Deposited 2006-02-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.84 Å R-free 0.214 |
| 2G4Q Anomalous substructure of lysozyme at pH 8.0 Deposited 2006-02-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.84 Å R-free 0.206 |
| 2H9J Structure of Hen egg white lysozyme soaked with Ni2-Xylylbicyclam Deposited 2006-06-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：Residues 19-147
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NI NICKEL (II) ION × 1 MM5 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZACYCLOTETRADECANE]NI(II) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；277 K；Acetate buffer, NaCl , pH 4.5, VAPOR DIFFUSION, temperature 277K, temperature 277.0K
|
Resolution 1.75 Å R-free 0.232 |
| 2H9K Structure of Hen egg white lysozyme soaked with Ni-cyclam Deposited 2006-06-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：Residues 19-147
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 MM6 NICKEL(II)(1,4,8,11-TETRAAZACYCLOTETRADECANE) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；277 K；Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 1.75 Å R-free 0.246 |
| 2HS7 Multipattern rietveld refinement with protein powder data: An approach to higher resolution Deposited 2006-07-21 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
BATCH CRYSTALLIZATION；pH 4；296 K；Rapid precipitation for 5 samples from 1.25, 1.00, 0.75, 0.50 and 0.25M NACL, in KHPHTHALATE BUFFER, pH 4.0, BATCH CRYSTALLIZATION, temperature 296K
|
Resolution 1.98 Å |
| 2HS9 Multipattern Rietveld refinement with protein powder data: An approach to higher resolution Deposited 2006-07-21 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
BATCH CRYSTALLIZATION；pH 5；298 K；Rapid precipitation for 4 samples from 1.25, 1.0, 0.75 AND 0.25M NaCl in 0.05M KHPHTHALATE BUFFER, pH 5.0, BATCH CRYSTALLIZATION, temperature 298K
|
Resolution 1.98 Å |
| 2HSO Multipattern rietveld refinement with protein powder data: An approach to higher resolution Deposited 2006-07-22 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
POWDER DIFFRACTION
X-ray crystallization conditions
batch crystallization；pH 4；298 K；Rapid precipitation from 1.25M NaCl in 0.05M KHPHTHALATE BUFFER, pH 4, batch crystallization, temperature 298K
|
Resolution 1.98 Å |
| 2HTX Crystal Structure Analysis of Hen Egg White Lysozyme Crosslinked by Polymerized Glutaraldehyde in Acidic Environment Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 1 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；291 K；0.1M Sodium Acetate, 7% NaCl, 25% Ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.56 Å R-free 0.182 |
| 2HU1 Crystal structure Analysis of Hen Egg White Lyszoyme Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 8 CL CHLORIDE ION × 4 220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 1 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；291 K；0.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.63 Å R-free 0.220 |
| 2HU1 Crystal structure Analysis of Hen Egg White Lyszoyme Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 16 CL CHLORIDE ION × 8 220 UNDECA-3,7-DIENE-1,3,7,11-TETRACARBALDEHYDE × 2 EDO 1,2-ETHANEDIOL × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；291 K；0.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.63 Å R-free 0.220 |
| 2HU3 Parent Structure of Hen Egg White Lysozyme grown in acidic pH 4.8. Refinement for comparison with crosslinked molecules of lysozyme Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 12 NA SODIUM ION × 5 NH4 AMMONIUM ION × 2 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；0.1M Na Acetate, pH 4.8, 7% NaCl, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å R-free 0.145 |
| 2HU3 Parent Structure of Hen Egg White Lysozyme grown in acidic pH 4.8. Refinement for comparison with crosslinked molecules of lysozyme Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 24 NA SODIUM ION × 10 NH4 AMMONIUM ION × 4 EDO 1,2-ETHANEDIOL × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；0.1M Na Acetate, pH 4.8, 7% NaCl, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å R-free 0.145 |
| 2HUB Structure of Hen Egg-White Lysozyme Determined from crystals grown in pH 7.5 Deposited 2006-07-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 PPI PROPANOIC ACID × 1 TAR D(-)-TARTARIC ACID × 1 FMT FORMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Microbatch, Douglas Instrument robot；pH 7.5；293 K；0.1 M HEPES-Na pH 7.5, 0.8M Potassium Sodium Tartrate tetrahydrate, Microbatch, Douglas Instrument robot, temperature 293K
|
Resolution 1.20 Å R-free 0.173 |
| 2I25 Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme Deposited 2006-08-15 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.3；295 K；38% PEG 400, 0.1M Tris, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.80 Å R-free 0.211 |
| 2I25 Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme Deposited 2006-08-15 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.3；295 K；38% PEG 400, 0.1M Tris, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 1.80 Å R-free 0.211 |
| 2I26 Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme Deposited 2006-08-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain L
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.8；295 K；11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å R-free 0.291 |
| 2I26 Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme Deposited 2006-08-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.8；295 K；11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å R-free 0.291 |
| 2I26 Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme Deposited 2006-08-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Q
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.8；295 K；11% PEG 4000, 1.8M ammonium sulfate, 0.1M BES, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.50 Å R-free 0.291 |
| 2I6Z X-ray diffraction studies of adducts between anticancer platinum drugs and hen egg white lysozyme Deposited 2006-08-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：Residues 19-147
|
Not recorded | CPT Cisplatin × 1 CL CHLORIDE ION × 1 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；5 mM sodium acetate buffer, pH 6.5 and 0.05 M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.90 Å R-free 0.243 |
| 2IFF STRUCTURE OF AN ANTIBODY-LYSOZYME COMPLEX: EFFECT OF A CONSERVATIVE MUTATION Deposited 1994-02-03 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Mutation：R68K | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.65 Å |
| 2LYM CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME AT A HYDROSTATIC PRESSURE OF 1000 ATMOSPHERES Deposited 1987-06-08 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 2LYO CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 90% ACETONITRILE-WATER Deposited 1998-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CCN ACETONITRILE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å R-free 0.203 |
| 2LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 2LZH THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION. Deposited 1981-06-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 6.00 Å |
| 2LZT REFINEMENT OF TRICLINIC LYSOZYME. II. THE METHOD OF STEREOCHEMICALLY RESTRAINED LEAST-SQUARES Deposited 1989-08-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 5 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.97 Å |
| 2PC2 Lysozyme Cocrystallized with Tris-dipicolinate Eu complex Deposited 2007-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EU EUROPIUM ION × 5 CL CHLORIDE ION × 1 PDC PYRIDINE-2,6-DICARBOXYLIC ACID × 13 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.1；293 K；0.3M NaCl, 0.1M MES, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.54 Å R-free 0.167 |
| 2Q0M Tricarbonylmanganese(I)-lysozyme complex : a structurally characterized organometallic protein Deposited 2007-05-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 MN MANGANESE (II) ION × 1 CMO CARBON MONOXIDE × 3 TFS trifluoromethanesulfonic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；0.9 M NaCl, 50 mM sodium acetate, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.70 Å R-free 0.249 |
| 2VB1 HEWL at 0.65 angstrom resolution Deposited 2007-09-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 3 NO3 NITRATE ION × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；SITTING DROP METHOD. PROTEIN SOLUTION: 35 MG/ML HEWL, 0.02 M NA ACETATE BUFFER PH 4.7 WELL SOLUTION: 1 M NANO3, 0.1 M NA ACETATE BUFFER PH 4.7, 20 % ETHYLENE GLYCOL PROTEIN AND WELL SOLUTIONS MIXED 1:1 IN A DROP AND SEEDED
|
Resolution 0.65 Å R-free 0.095 |
| 2W1L THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 0.979 a wavelength 991 images data Deposited 2008-10-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2；PLEASE SEE REFERENCE., pH 4.2
|
Resolution 1.51 Å R-free 0.210 |
| 2W1M THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 2.070 A WAVELENGTH with 2theta 30 degrees data Deposited 2008-10-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2；PLEASE SEE REFERENCE PAPER., pH 4.2
|
Resolution 1.78 Å R-free 0.238 |
| 2W1X The interdependence of wavelength, redundancy and dose in sulfur SAD experiments: 1.284 A wavelength 360 images data Deposited 2008-10-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2；PLEASE REFER TO RESEARCH PAPER, pH 4.2
|
Resolution 1.70 Å R-free 0.228 |
| 2W1Y THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 1.540 A wavelength 180 images data Deposited 2008-10-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.2；PLEASE REFER TO RESEARCH PAPER, pH 4.2
|
Resolution 1.73 Å R-free 0.214 |
| 2WAR Hen Egg White Lysozyme E35Q chitopentaose complex Deposited 2009-02-13 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：YES | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；PROTEIN AT 7MG ML-1 IN 10MM CHITOPENTAOSE 200MM NA ACETATE PH5 WAS MIXED WITH RESERVOIR OF 200MM NA ACETATE, 4% W/V NACL PH4.5
|
Resolution 1.80 Å R-free 0.196 |
| 2X0A MPD-Lysozyme structure at 55.5 keV using a TRIXXEL CsI-aSi based digital imager and the new ESRF U22 undulator source at ID15 Deposited 2009-12-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；295 K；HANGING DROP METHOD AT 295K. DROP IS 1 MICROL OF 50 MG/ML PROTEIN AND 1 MICROL OF WELL SOLUTION. WELL VOLUME IS 1ML OF 70 % MPD FROM HAMPTON RESEARCH.
|
Resolution 1.52 Å R-free 0.199 |
| 2XBR Raman crystallography of Hen White Egg Lysozyme - Low X-ray dose (0.2 MGy) Deposited 2010-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；75 MM SODIUM ACETATE PH 4.6, 1.0 M SODIUM CHLORIDE
|
Resolution 1.29 Å R-free 0.186 |
| 2XBS Raman crystallography of Hen White Egg Lysozyme - High X-ray dose (16 MGy) Deposited 2010-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；75 MM SODIUM ACETATE PH 4.6, 1.0 M SODIUM CHLORIDE
|
Resolution 1.37 Å R-free 0.193 |
| 2XJW Lysozyme-CO releasing molecule adduct Deposited 2010-07-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RU RUTHENIUM ION × 3 NA SODIUM ION × 1 CMO CARBON MONOXIDE × 6 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；2-10% (M/V) NACL, 0.1 M ACETATE BUFFER PH 4.5. HANGING AND SITTING DROPS
|
Resolution 1.67 Å R-free 0.208 |
| 2XTH K2PtBr6 binding to lysozyme Deposited 2010-10-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 6BP HEXABROMOPLATINATE(IV) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；10% SODIUM CHLORIDE W/V; PH 4.7 0.04M SODIUM ACETATE BUFFER; 80MG OF LYSOZYME PROTEIN 2ML AQUEOUS.
|
Resolution 1.80 Å R-free 0.249 |
| 2YBH Nitrate X-ray induced reduction on HEWL crystals (2.31 MGy). Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å R-free 0.236 |
| 2YBI Nitrate X-ray induced reduction on HEWL crystals (6.62 MGy) Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 NO2 NITRITE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å R-free 0.233 |
| 2YBJ Nitrate X-ray induced reduction on HEWL crystals (12.31 MGy) Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO2 NITRITE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å R-free 0.215 |
| 2YBL Nitrate X-ray induced reduction on HEWL crystals (17.9 MGy) Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO2 NITRITE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å R-free 0.253 |
| 2YBM Nitrate X-ray induced reduction on HEWL crystals (23.3 MGy) Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO NITRIC OXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE PH 4.7, 10% W/V NACL
|
Resolution 2.00 Å R-free 0.242 |
| 2YBN Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy) Deposited 2011-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO2 NITRITE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
|
Resolution 2.00 Å R-free 0.250 |
| 2YDG Ascorbate co-crystallized HEWL. Deposited 2011-03-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ASC ASCORBIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；200 MM SODIUM ACETATE BUFFER AT PH 4.7 CONTAINING 10 % W/V NACL.
|
Resolution 2.00 Å R-free 0.186 |
| 2YSS Crystal structure of Humanized HYHEL-10 FV mutant(HQ39KW47Y)-HEN lysozyme complex Deposited 2007-04-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；293 K；28-31% PEG MME 550, 0.01M zinc sulfate, 0.1M MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.40 Å R-free 0.265 |
| 2YVB High resolution X-ray crystal structure of Tetragonal Hen egg white lysozyme Deposited 2007-04-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；293 K；0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.62 Å R-free 0.277 |
| 2Z12 Structure of the transformed monoclinic lysozyme by controlled dehydration Deposited 2007-05-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration induced phase transition；293 K；temperature-regulated nitragen gas, Dehydration induced phase transition, temperature 293K
|
Resolution 1.15 Å R-free 0.205 |
| 2Z18 Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution Deposited 2007-05-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 HDZ NITROGEN MOLECULE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration induced phase transition；293 K；10% NaCl, temperature-regulated nitrogen gas, Dehydration induced phase transition, temperature 293K
|
Resolution 1.15 Å R-free 0.176 |
| 2Z19 Phase transition of monoclinic lysozyme crystal soaked in a saturated NaCl solution Deposited 2007-05-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Dehydration-induced phase transition；pH 7.6；293 K；NaCl, nitrogen-gas, pH 7.6, Dehydration-induced phase transition, temperature 293K
|
Resolution 1.15 Å R-free 0.203 |
| 2ZNW Crystal Structure of ScFv10 in Complex with Hen Egg Lysozyme Deposited 2008-05-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Y
19–147（129 aa）
|
Not recorded | 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；30% PEG 400, 0.2M Na Citrate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.71 Å R-free 0.250 |
| 2ZNW Crystal Structure of ScFv10 in Complex with Hen Egg Lysozyme Deposited 2008-05-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Z
19–147（129 aa）
|
Not recorded | 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；30% PEG 400, 0.2M Na Citrate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.71 Å R-free 0.250 |
| 2ZNX 5-Fluorotryptophan Incorporated ScFv10 Complexed to Hen Egg Lysozyme Deposited 2008-05-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Y
19–147（129 aa）
|
Not recorded | 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；30% PEG400, 0.2M Na Citrate; 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.232 |
| 2ZNX 5-Fluorotryptophan Incorporated ScFv10 Complexed to Hen Egg Lysozyme Deposited 2008-05-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Z
19–147（129 aa）
|
Not recorded | 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；30% PEG400, 0.2M Na Citrate; 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å R-free 0.232 |
| 2ZQ3 The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.6 angstroms resolution Deposited 2008-08-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
277 K；277K
|
Resolution 1.60 Å R-free 0.207 |
| 2ZQ4 The crystal structure of the orthorhombic form of hen egg white lysozyme at 2.0 angstroms resolution Deposited 2008-08-03 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
310 K；310K
|
Resolution 2.00 Å R-free 0.222 |
| 2ZYP X-ray structure of hen egg-white lysozyme with poly(allyl amine) Deposited 2009-01-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 AYE prop-2-en-1-amine × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.1% PAA, 1.0M sodium chloride, 0.1M sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.18 Å R-free 0.224 |
| 3A34 Effect of Ariginine on lysozyme Deposited 2009-06-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ARG ARGININE × 4 CL CHLORIDE ION × 3 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å R-free 0.226 |
| 3A3Q Structure of N59D HEN EGG-WHITE LYSOZYME in complex with (GlcNAc)3 Deposited 2009-06-16 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：N59D | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；10% sodium chloride, 0.1M sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å R-free 0.287 |
| 3A3R Structure of N59D HEN EGG-WHITE LYSOZYME Deposited 2009-06-16 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Mutation：N59D | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；10% sodium chloride, 0.1M sodium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.249 |
| 3A67 Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme Deposited 2009-08-24 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.225 |
| 3A6B Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme Deposited 2009-08-28 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.222 |
| 3A6C Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme Deposited 2009-08-28 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.6；293 K；PEG 6000, Hepes, glycerol, methyl-pentanediol, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.80 Å R-free 0.216 |
| 3A8Z Crystal structure of hen egg white lysozyme Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.40 Å R-free 0.212 |
| 3A90 Crystal structure of hen egg white lysozyme soaked with 1mM RhCl3 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.45 Å R-free 0.210 |
| 3A91 Crystal structure of hen egg white lysozyme soaked with 5mM RhCl3 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 RH3 RHODIUM(III) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å R-free 0.207 |
| 3A92 Crystal structure of hen egg white lysozyme soaked with 10mM RhCl3 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 6 RH3 RHODIUM(III) ION × 4 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.217 |
| 3A93 Crystal structure of hen egg white lysozyme soaked with 30mM RhCl3 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 RH3 RHODIUM(III) ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å R-free 0.207 |
| 3A94 Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 RH3 RHODIUM(III) ION × 11 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.55 Å R-free 0.229 |
| 3A95 Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH3.8 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 RH3 RHODIUM(III) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.243 |
| 3A96 Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2 Deposited 2009-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 RH3 RHODIUM(III) ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.75 Å R-free 0.225 |
| 3AGG X-ray analysis of lysozyme in the absence of Arg Deposited 2010-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain G
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 9 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；293 K；0.05M Sodium Acetate, 1.6M Sodium Chloride, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.60 Å R-free 0.198 |
| 3AGH X-ray analysis of lysozyme in the presence of 200 mM Arg Deposited 2010-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；293 K；0.05M Sodium Acetate, 1.6M Sodium Chloride, 0.2M Arg, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.49 Å R-free 0.205 |
| 3AGI High resolution X-ray analysis of Arg-lysozyme complex in the presence of 500 mM Arg Deposited 2010-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 ARG ARGININE × 3 NA SODIUM ION × 1 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；293 K；0.05 M Sodium Acetate
1.6 M Sodium Chloride
0.5 M Arg, pH 4.5, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.20 Å R-free 0.167 |
| 3AJN Structural basis of glycine amide on suppression of protein aggregation by high resolution X-ray analysis Deposited 2010-06-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GM1 AMINOMETHYLAMIDE × 4 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch；pH 4.5；293 K；0.05M sodium acetate, 1.0M glycine amide, pH 4.5, Batch, temperature 293K
|
Resolution 1.05 Å R-free 0.163 |
| 3ATN Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation Deposited 2011-01-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 10 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch；pH 4.5；293 K；0.05M sodium acetate, 0.8M sodium chloride, pH 4.5, Batch, temperature 293K
|
Resolution 1.17 Å R-free 0.174 |
| 3ATO Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation Deposited 2011-01-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GEE ethyl glycinate × 3 CL CHLORIDE ION × 10 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch；pH 4.5；293 K；0.05M sodium acetate, 1.0M glycine ethyl ester, pH 4.5, Batch, temperature 293K
|
Resolution 1.17 Å R-free 0.175 |
| 3AW6 Crystal structure of tetragonal hen egg white lysozyme at 84.2% relative humidity Deposited 2011-03-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 NA SODIUM ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.2；293 K；3-8%(w/v) NaCl, 100mM Na acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.220 |
| 3AW7 Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity Deposited 2011-03-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 NA SODIUM ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.2；293 K；3-8%(w/v) NaCl, 100mM Na acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.218 |
| 3AZ4 Crystal structure of Co/O-HEWL Deposited 2011-05-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CO COBALT (II) ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；300 K；Sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.62 Å R-free 0.246 |
| 3AZ5 Crystal structure of Pt/O-HEWL Deposited 2011-05-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；303 K；sodium chloride, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 30K, temperature 303K
|
Resolution 2.34 Å R-free 0.303 |
| 3AZ6 Crystal structure of Co/T-HEWL Deposited 2011-05-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CO COBALT (II) ION × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 4 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å R-free 0.222 |
| 3AZ7 Crystal structure of Pt/T-HEWL Deposited 2011-05-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 100K, temperature 293K
|
Resolution 2.10 Å R-free 0.303 |
| 3B6L Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol Deposited 2007-10-29 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | SDS DODECYL SULFATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；100mM sodium acetate buffer pH 4.6 and 2M sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 2.30 Å R-free 0.214 |
| 3B72 Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol Deposited 2007-10-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；300 K；50mM Tris pH8, 70% MPD and 6mM SDS, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.50 Å R-free 0.241 |
| 3D9A High Resolution Crystal Structure Structure of HyHel10 Fab Complexed to Hen Egg Lysozyme Deposited 2008-05-27 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；0.2M di-Ammonium Citrate; 20% PEG 3350, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.20 Å R-free 0.205 |
| 3E3D Structure of hen egg white lysozyme with the magic triangle I3C Deposited 2008-08-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | I3C 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid × 4 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；0.1M HEPES, 15%(wt/wt) PEG 3350, 8mM sodium I3C(magic triangle) solution, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.55 Å R-free 0.220 |
| 3EMS Effect of Ariginine on lysozyme Deposited 2008-09-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ARG ARGININE × 4 CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；1.5M NaCl, 0.5M Arg, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.235 |
| 3EXD Sulfur-SAD phased HEWL Crystal Deposited 2008-10-16 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；291 K；100MM SODIUM CITRATE, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.49 Å R-free 0.184 |
| 3F6Z Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme Deposited 2008-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
19–147（129 aa）
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；287 K；1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å R-free 0.278 |
| 3F6Z Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme Deposited 2008-11-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；287 K；1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å R-free 0.278 |
| 3F6Z Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme Deposited 2008-11-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；287 K；1.0M sodium citrate dehydrate, 0.1M HEPES (pH 7.5) , VAPOR DIFFUSION, HANGING DROP, temperature 287K
|
Resolution 2.50 Å R-free 0.278 |
| 3G3A Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 5.6；296 K；2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å R-free 0.271 |
| 3G3A Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 5.6；296 K；2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å R-free 0.271 |
| 3G3A Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 5.6；296 K；2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å R-free 0.271 |
| 3G3A Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 5.6；296 K；2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.6, EVAPORATION, temperature 296K
|
Resolution 2.20 Å R-free 0.271 |
| 3G3B Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 8.5；296 K；8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å R-free 0.286 |
| 3G3B Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 8.5；296 K；8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å R-free 0.286 |
| 3G3B Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 8.5；296 K；8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å R-free 0.286 |
| 3G3B Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen Deposited 2009-02-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 8.5；296 K；8% (w/v) polyethylene glycol 8000, 0.1 M Tris-HCl, pH 8.5, EVAPORATION, temperature 296K
|
Resolution 2.40 Å R-free 0.286 |
| 3HFM STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX. CRYSTAL STRUCTURE OF THE HY/HEL-10 FAB-LYSOZYME COMPLEX Deposited 1988-08-11 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain Y
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.00 Å |
| 3IJU Chicken egg white lysozyme by highly ordered APA (Anodic Porous Alumina) nanotemplate crystallization method Deposited 2009-08-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å R-free 0.237 |
| 3IJV Chicken egg white lysozyme by classical hanging drop vapour diffusion method Deposited 2009-08-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；0.04N NaOAc/HOAc buffer, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.70 Å R-free 0.264 |
| 3J4G Structure of lysozyme solved by MicroED to 2.9 A Deposited 2013-08-12 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
50 mM sodium acetate, 3.5 M sodium choride, 15% PEG 5000；pH 4.5；50 mM sodium acetate, 3.5 M sodium choride, 15% PEG 5000
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å R-free 0.278 |
| 3J6K 2.5A structure of lysozyme solved by MicroED Deposited 2014-03-18 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å R-free 0.255 |
| 3KAM Hen Egg White Lysozyme Derivatized with rhenium(I) diaquatricarbonyl cation Deposited 2009-10-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | RE RHENIUM × 1 CMO CARBON MONOXIDE × 3 CL CHLORIDE ION × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；292 K；0.1 M MES, pH 5.5, 8% NaCl, 50 mg/mL protein, VAPOR DIFFUSION, HANGING DROP, temperature 292K
|
Resolution 1.59 Å R-free 0.215 |
| 3LYM CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME AT A HYDROSTATIC PRESSURE OF 1000 ATMOSPHERES Deposited 1987-06-08 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 3LYO CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 95% ACETONITRILE-WATER Deposited 1998-03-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CCN ACETONITRILE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 1.93 Å R-free 0.208 |
| 3LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 3LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 3LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 3LZT REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION Deposited 1997-03-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 ACT ACETATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 4.6；BATCH METHOD USED. 1% PROTEIN SOLUTION IN 100MM SODIUM ACETATE PH 4.5-4.6. SODIUM NITRATE ADDED TO A CONCENTRATION OF 20MGS/ML. CRYSTALS GROWN AT ROOM TEMPERATURE., batch method
|
Resolution 0.93 Å R-free 0.114 |
| 3M18 Crystal structure of variable lymphocyte receptor VLRA.R2.1 in complex with hen egg lysozyme Deposited 2010-03-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；15% (w/v) polyethylene glycol 2000 and 0.1 M Bis-Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.95 Å R-free 0.240 |
| 3M3U Effect of temperature on tryptophan fluorescence in lysozyme crystals Deposited 2010-03-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；295 K；0.1M Sodium Acetate, 7% NaCl, 25% Ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.35 Å R-free 0.199 |
| 3MBE TCR 21.30 in complex with MHC class II I-Ag7HEL(11-27) Deposited 2010-03-25 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Heteromer；Protein × 5 PDB declaration: pentameric |
Chain P
28–45（18 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；295 K；20% PEG4000, 0.2M K formate, 0.1M Na Cacodylate., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.89 Å R-free 0.281 |
| 3MBE TCR 21.30 in complex with MHC class II I-Ag7HEL(11-27) Deposited 2010-03-25 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Other combination Heteromer；Protein × 5 PDB declaration: pentameric |
Chain Q
28–45（18 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；295 K；20% PEG4000, 0.2M K formate, 0.1M Na Cacodylate., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.89 Å R-free 0.281 |
| 3N9A Mite-y Lysozyme: Vegemite Deposited 2010-05-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；Crystals were obtained by counter diffusion in capillary tubes stuck into Vegemite., pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.40 Å R-free 0.189 |
| 3N9C Mite-y Lysozyme: Marmite Deposited 2010-05-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；Crystals were obtained using counter diffusion using Marmite, pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.50 Å R-free 0.190 |
| 3N9E Mite-y Lysozyme: Promite Deposited 2010-05-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；Crystals were obtained by counter diffusion against Promite, pH 4.5, LIQUID DIFFUSION, temperature 293K
|
Resolution 1.38 Å R-free 0.183 |
| 3OJP D52N Mutant of Hen Egg White Lysozyme (HEWL) Deposited 2010-08-23 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：D52N | ACT ACETATE ION × 3 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；291 K；NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.81 Å R-free 0.219 |
| 3OK0 E35A Mutant of Hen Egg White Lysozyme (HEWL) Deposited 2010-08-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：E35A | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；291 K；NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.82 Å R-free 0.184 |
| 3P4Z Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU GOLD ION × 1 CL CHLORIDE ION × 2 AU3 GOLD 3+ ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.60 Å R-free 0.236 |
| 3P64 Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU3 GOLD 3+ ION × 3 AU GOLD ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.30 Å R-free 0.234 |
| 3P65 Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU3 GOLD 3+ ION × 4 AU GOLD ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 2.10 Å R-free 0.225 |
| 3P66 Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU3 GOLD 3+ ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.36 Å R-free 0.243 |
| 3P66 Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | AU3 GOLD 3+ ION × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K
|
Resolution 1.36 Å R-free 0.243 |
| 3P68 Time-dependent and Protein-directed In Situ Growth of Gold Nanoparticles in a Single Crystal of Lysozyme Deposited 2010-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU3 GOLD 3+ ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.8；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.8, EVAPORATION, temperature 298K
|
Resolution 1.60 Å R-free 0.255 |
| 3QE8 Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(H2O)(Im)]+ Deposited 2011-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.54；298 K；0.05M acetate buffer pH 4.54, 0.9M NaCl, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.49 Å R-free 0.219 |
| 3QE8 Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(H2O)(Im)]+ Deposited 2011-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.54；298 K；0.05M acetate buffer pH 4.54, 0.9M NaCl, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.49 Å R-free 0.219 |
| 3QNG Crystal Structure Analysis of Lysozyme-bound fac-[Re(CO)3(L-serine)] Deposited 2011-02-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | REJ Tricarbonyl (L-serine) rhenium(I) × 1 CL CHLORIDE ION × 1 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.54；298 K；0.05M Acetate buffer, 0.9M NaCl, pH 4.54, temperature 298K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.55 Å R-free 0.217 |
| 3QY4 Crystallization and in situ data collection of Lysozyme using the Crystal Former Deposited 2011-03-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；298 K；Crystals were grown through liquid-liquid diffusion using the Crystal Former from Microlytic, pH 4.6, microfluidic, temperature 298K
|
Resolution 1.65 Å R-free 0.212 |
| 3RNX Crystal Structure of Lysozyme in 30% ethanol Deposited 2011-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EOH ETHANOL × 8 CL CHLORIDE ION × 9 ACT ACETATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；277 K；40 mM sodium acetate, 150mM sodium chloride, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.86 Å R-free 0.207 |
| 3RT5 Lysozyme in 30% propanol Deposited 2011-05-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain X
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 8 IPA ISOPROPYL ALCOHOL × 6 POL N-PROPANOL × 1 ACT ACETATE ION × 1 CL CHLORIDE ION × 14 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；277 K；40mM Sodium Acetate, 150mM Sodium chloride, 30% 2-propanol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.75 Å R-free 0.214 |
| 3RU5 Silver Metallated Hen Egg White Lysozyme at 1.35 A Deposited 2011-05-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP RESIDUES 19-147
|
Not recorded | AG SILVER ION × 1 NO3 NITRATE ION × 6 NA SODIUM ION × 5 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；293 K；5 mM silver(I) 3-hydroxybutyrate, 3% (w/v) sodium nitrate, 25% (v/v) ethylene glycol, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.35 Å R-free 0.215 |
| 3RW8 Crystal structure of lysozyme in 40% ethanol Deposited 2011-05-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EOH ETHANOL × 14 CL CHLORIDE ION × 9 NA SODIUM ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；277 K；40mM Sodium acetate, 150mM Sodium chloride, 40% Ethanol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.85 Å R-free 0.227 |
| 3RZ4 Hen egg-white lysozyme in HEPES buffer at pH 7.5 Deposited 2011-05-11 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：unp residues 19-147
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；0.8M potassium sodium tartrate tetrahydrate, 0.1M HEPES sodium, pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.80 Å R-free 0.223 |
| 3SP3 Lysozyme in 20% sucrose Deposited 2011-07-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；277 K；40 mM Sodium Acetate, 150mM Sodium Chloride, 20% Sucrose, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.80 Å R-free 0.229 |
| 3T6U Crystal Structure of Lysozyme in 40% sucrose Deposited 2011-07-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；277 K；40mM Sodium acetate, 150mM Sodium chloride, 40% Sucrose , pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.21 Å R-free 0.218 |
| 3TMU X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.195 |
| 3TMU X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 16 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.195 |
| 3TMV X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=0.12MGy) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å R-free 0.219 |
| 3TMV X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=0.12MGy) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 16 NA SODIUM ION × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å R-free 0.219 |
| 3TMW X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.204 |
| 3TMW X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Undosed) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 16 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.204 |
| 3TMX X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=1.9MGy) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.210 |
| 3TMX X-Ray Radiation Damage to HEWL Crystals soaked in 100mM Sodium Nitrate (Dose=1.9MGy) Deposited 2011-08-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 16 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å R-free 0.210 |
| 3TXB HEWL co-crystallization with cisplatin in aqueous media with glycerol as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 GOL GLYCEROL × 30 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3 mg cisplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.59 Å R-free 0.257 |
| 3TXD HEWL co-crystallization with carboplatin in aqueous media with glycerol as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 3 GOL GLYCEROL × 13 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3.13 mg carboplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.53 Å R-free 0.258 |
| 3TXE HEWL co-crystallization with carboplatin in aqueous media with paratone as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 MEB 2-methylprop-1-ene × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3.7 mg carboplatin in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.259 |
| 3TXF HEWL co-crystallization with cisplatin in DMSO media with glycerol as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 CPT Cisplatin × 1 DMS DIMETHYL SULFOXIDE × 16 GOL GLYCEROL × 21 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.69 Å R-free 0.249 |
| 3TXG HEWL co-crystallization with cisplatin in DMSO media with paratone as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 CPT Cisplatin × 2 DMS DIMETHYL SULFOXIDE × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.239 |
| 3TXH HEWL co-crystallization with carboplatin in DMSO media with glycerol as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 10 GOL GLYCEROL × 11 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with glycerol as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.69 Å R-free 0.233 |
| 3TXI HEWL co-crystallization with carboplatin in DMSO media with paratone as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 14 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å R-free 0.233 |
| 3TXJ HEWL co-crystallization with NAG with silicone oil as the cryoprotectant Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL + 117 mg N-acetylglucosamine in 1 mL 0.04 M sodium acetate + 1 mL 10% sodium chloride, with silicone oil as cryoprotectant, pH 4.7, BATCH, temperature 295K
|
Resolution 2.48 Å R-free 0.289 |
| 3TXK HEWL co-crystallization with cisplatin in DMSO media with paratone as the cryoprotectant at pH 6.5 Deposited 2011-09-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 DMS DIMETHYL SULFOXIDE × 4 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 6.5；277 K；20 mg HEWL + 1.1 mg cisplatin in 462.5 uL 0.04 M sodium acetate + 75 uL DMSO + 462.5 uL 10% sodium chloride, with paratone as cryoprotectant, pH 6.5, BATCH, temperature 277K
|
Resolution 3.00 Å R-free 0.259 |
| 3W6A Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked wiht 5mM [Ru(benzene)Cl2]2 Deposited 2013-02-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 ACT ACETATE ION × 1 RBN Benzeneruthenium(II) chloride × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.77 Å R-free 0.272 |
| 3WL2 Monoclinic Lysozyme at 0.96 A resolution Deposited 2013-11-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；50mM Sodium Acetate pH4.7, 20% Ethylene glycol, 0.4M Sodium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 0.96 Å R-free 0.195 |
| 3WL2 Monoclinic Lysozyme at 0.96 A resolution Deposited 2013-11-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；50mM Sodium Acetate pH4.7, 20% Ethylene glycol, 0.4M Sodium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 0.96 Å R-free 0.195 |
| 3WMK Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K Deposited 2013-11-19 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；277 K；80mg/ml hen egg-white lysozyme, 100mM Sodium Acetate, 1M NaCl , pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.46 Å R-free 0.235 |
| 3WPJ SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE Deposited 2014-01-12 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.206 |
| 3WPK SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC Deposited 2014-01-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.197 |
| 3WPL SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC Deposited 2014-01-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.223 |
| 3WU7 Spatiotemporal development of soaked protein crystal; derivative 250 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.215 |
| 3WU7 Spatiotemporal development of soaked protein crystal; derivative 250 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.215 |
| 3WU8 Spatiotemporal development of soaked protein crystal; derivative 1080 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.216 |
| 3WU8 Spatiotemporal development of soaked protein crystal; derivative 1080 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.216 |
| 3WU9 Spatiotemporal development of soaked protein crystal; derivative 1580 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.207 |
| 3WU9 Spatiotemporal development of soaked protein crystal; derivative 1580 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.207 |
| 3WUA Spatiotemporal development of soaked protein crystal; derivative 3610 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.217 |
| 3WUA Spatiotemporal development of soaked protein crystal; derivative 3610 sec Deposited 2014-04-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：1,4-BETA-N-ACETYLMURAMIDASE C, UNP residues 19-147
|
Not recorded | PT4 PLATINUM (IV) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH METHOD；pH 4.5；293 K；25mg/ml Lysozyme, 0.05M SODIUM ACETATE, 0.7M SODIUM CHLORIDE, pH 4.5, BATCH METHOD, temperature 293K
|
Resolution 2.00 Å R-free 0.217 |
| 3WUL Crystal structure of hen egg-white lysozyme Deposited 2014-04-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å R-free 0.230 |
| 3WUM Crystal structure of hen egg-white lysozyme Deposited 2014-04-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å R-free 0.226 |
| 3WUN Crystal structure of hen egg-white lysozyme Deposited 2014-04-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.40 Å R-free 0.230 |
| 3WVX Structure of D48A hen egg white lysozyme Deposited 2014-06-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Mutation：D48A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；293 K；0.1M Sodium acetate buffer, 1.2M NaCl, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.58 Å R-free 0.206 |
| 3WVY Structure of D48A hen egg white lysozyme in complex with (GlcNAc)4 Deposited 2014-06-11 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Mutation：D48A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4；293 K；0.1M Sodium acetate buffer, 1.2M NaCl, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.56 Å R-free 0.243 |
| 3WW5 Crystal Structure of hen egg white lysozyme mutant N46E/D52S Deposited 2014-06-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Mutation：N46E, D52S | CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；0.6M sodium chloride, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.53 Å R-free 0.222 |
| 3WW6 Crystal Structure of hen egg white lysozyme mutant N46D/D52S Deposited 2014-06-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Mutation：N46D, D52S | CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；0.6M sodium chloride, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
|
Resolution 1.53 Å R-free 0.205 |
| 3WXT Crystal structure of hen egg-white lysozyme Deposited 2014-08-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å R-free 0.230 |
| 3WXU Crystal structure of hen egg-white lysozyme Deposited 2014-08-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.00 Å R-free 0.211 |
| 3ZEK Hen egg-white lysozyme structure determined at room temperature by in- situ diffraction in ChipX Deposited 2012-12-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；293 K；LYSOZYME WAS CRYSTALLIZED AT 293 K BY COUNTER-DIFFUSION IN A CHIPX MICROFLUIDIC DEVICE. MICROFLUIDIC CHANNELS WERE FILLED WITH A 50 MG/ML LYSOZYME SOLUTION CONTAINING 0.3% BETA-OCTYL-GLUCOSIDE (M/V) TO FACILITATE SAMPLE LOADING BY CAPILLARITY. CRYSTALLANT RESERVOIRS WERE FILLED WITH 1 M NACL CONTAINING 30% (M/V) PEG-3350 OR 2 M NACL, AND 0.1 M SODIUM ACETATE PH 4.5.
|
Resolution 1.43 Å R-free 0.183 |
| 3ZVQ Crystal Structure of proteolyzed lysozyme Deposited 2011-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–88（70 aa）
Fragment：RESIDUES 19-88
Chain B
90–147（58 aa）
Fragment：RESIDUES 90-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
298 K；20MG/ML PROTEOLYZED LYSOZYME, 15%PEG3500, 25C
|
Resolution 2.00 Å R-free 0.237 |
| 4A7D X-ray crystal structure of HEWL flash-cooled at high pressure Deposited 2011-11-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 9 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；0.1 M SODIUM ACETATE, 15% (W/V) SODIUM CHLORIDE, PH 4.6
|
Resolution 1.50 Å R-free 0.203 |
| 4A8A Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozyme Deposited 2011-11-20 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 13 PDB declaration: tridecameric |
Chain M
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM HEPES/NAOH, 150 MM NACL；pH 7.5；20 MM HEPES/NAOH, 150 MM NACL
cryo-EM vitrification conditions
Cryogen ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- MANUAL PLUNGER, METHOD- BLOT FOR 2 SECONDS BEFORE PLUNGING,
|
Resolution 14.20 Å |
| 4A8B Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes Deposited 2011-11-20 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric |
Chain M
19–147（129 aa）
Chain N
19–147（129 aa）
Chain O
19–147（129 aa）
Chain P
19–147（129 aa）
Chain Q
19–147（129 aa）
Chain R
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM HEPES/NAOH, 150 MM NACL；pH 7.5；20 MM HEPES/NAOH, 150 MM NACL
cryo-EM vitrification conditions
Cryogen ETHANE；VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- MANUAL PLUNGER, METHOD- BLOT FOR 2 SECONDS BEFORE PLUNGING,
|
Resolution 13.00 Å |
| 4AGA Hofmeister effects of ionic liquids in protein crystallization: direct and water-mediated interactions Deposited 2012-01-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 CHT CHOLINE ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；CHICKEN EGG WHITE LYSOZYME (FLUKA) HAS BEEN DISSOLVED IN 50 MM SODIUM ACETATE BUFFER PH 4.57 AND CRYSTALLIZED BY SITTING DROP DIFFUSION METHOD. EACH DROP CONTAINED 20 MG/ML OF LYSOZYME AND 5.5 PERCENT OF NACL IN 25 MM OF NA[AC] PH 4.57
|
Resolution 1.50 Å R-free 0.211 |
| 4AXT CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME FROM AN AUTO HARVESTED CRYSTAL, Control Experiment Deposited 2012-06-14 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.10 Å R-free 0.177 |
| 4B0D CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME FROM AN AUTO HARVESTED CRYSTAL Deposited 2012-07-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.10 Å R-free 0.208 |
| 4B1A Crystal structure of lysozyme with Keggin molecule Deposited 2012-07-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | K3G Phosphomolybdate keggin × 2 NA SODIUM ION × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；2-10% (M/V) NACL AND 0.1 M ACETATE BUFFER PH 4.5 (THE PROTEIN:WELL SOLUTION RATIO IN THE DROP WAS 1:1 WITH THE FINAL DROP VOLUME OF 4 MICROLITER USING A PROTEIN STOCK CONCENTRATION OF AROUND 50 MG/ML.
|
Resolution 1.67 Å R-free 0.267 |
| 4B49 1.15 A Structure of Lysozyme Crystallized without 2-methyl-2,4- pentanediol Deposited 2012-07-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；277 K；CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS PH 8.0. CONDITIONS IN RESERVOIR: 200MM TRIS PH 8.0.
|
Resolution 1.15 Å R-free 0.151 |
| 4B4E 1.00 A Structure of Lysozyme Crystallized with (R)-2-methyl-2,4- pentanediol Deposited 2012-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；277 K；CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS (PH 8.0) AND 60% V/V (R)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS (PH 8.0).
|
Resolution 1.00 Å R-free 0.144 |
| 4B4I 1.20 A Structure of Lysozyme Crystallized with (S)-2-methyl-2,4- pentanediol Deposited 2012-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；277 K；CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS (PH=8.0) AND 30% (V/V) (S)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS (PH=8.0) AND 60% (V/V) (S)-MPD.
|
Resolution 1.20 Å R-free 0.167 |
| 4B4J 1.25 A Structure of Lysozyme Crystallized with (RS)-2-methyl-2,4- pentanediol Deposited 2012-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；277 K；CRYSTALLIZATION BY HANGING DROP AT 4C. CONDITIONS IN DROP: PROTEIN AT 35 MG/ML IN 200MM TRIS PH 8.0 AND 30% (V/V) (RS)-MPD. CONDITIONS IN RESERVOIR: 200MM TRIS PH 8.0 AND 60% (V/V) (RS)-MPD.
|
Resolution 1.25 Å R-free 0.156 |
| 4BAD Hen egg-white lysozyme structure in complex with the europium tris- hydroxymethyltriazoledipicolinate complex at 1.35 A resolution. Deposited 2012-09-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | HM6 4-(4-(hydroxymethyl)-1h-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid × 4 ACT ACETATE ION × 1 CL CHLORIDE ION × 6 NA SODIUM ION × 2 EU3 EUROPIUM (III) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；293 K；0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00025 M PROTEIN, 0.0027 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.35 Å R-free 0.172 |
| 4BAF Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethyltriazoledipicolinate complex at 1.51 A resolution. Deposited 2012-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EU3 EUROPIUM (III) ION × 1 IKX 4-(4-(2-hydroxyethyl)-1H-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid × 3 ACT ACETATE ION × 1 CL CHLORIDE ION × 9 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；293 K；0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00046 M PROTEIN, 0.001.4 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.51 Å R-free 0.179 |
| 4BAP Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethylcholinetriazoledipicolinate complex at 1.21 A resolution. Deposited 2012-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DCJ N-((1-(2,6-DICARBOXYPYRIDIN-4-YL)-1H-1,2,3-TRIAZOL-4-YL)METHYL)-2-HYDROXY-N,N-DIMETHYLETHANAMINIUM × 3 ACT ACETATE ION × 1 CL CHLORIDE ION × 8 NA SODIUM ION × 2 EU3 EUROPIUM (III) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.6；293 K；0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M SODIUM CHLORIDE, 0.00067 M PROTEIN, 0.012 M LANTHANIDE COMPLEX, 293 K, 3-7 DAYS
|
Resolution 1.21 Å R-free 0.178 |
| 4BS7 Hen egg-white lysozyme structure determined at room temperature by in- situ diffraction and SAD phasing in ChipX Deposited 2013-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | YB YTTERBIUM (III) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；293 K；LYSOZYME WAS CRYSTALLIZED AT 293 K BY COUNTER-DIFFUSION IN A CHIPX MICROFLUIDIC DEVICE. MICROFLUIDIC CHANNELS WERE FILLED WITH A 50 MG/ML LYSOZYME SOLUTION CONTAINING 0.3% BETA-OCTYL-GLUCOSIDE (M/V) TO FACILITATE SAMPLE LOADING BY CAPILLARITY. CRYSTALLANT RESERVOIRS WERE FILLED WITH 1.8 M NACL, 0.1 M SODIUM ACETATE PH 4.5 AND 0.05 M HPDO3A-YB.
|
Resolution 1.70 Å R-free 0.193 |
| 4C3W Vanadium(IV)-Picolinate Complexed with Lysozyme Deposited 2013-08-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AIV hydroxy(oxo)bis(pyridine-2-carboxylato-kappa~2~N,O)vanadium(3+) × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.28 Å R-free 0.175 |
| 4CJ2 Crystal structure of HEWL in complex with affitin H4 Deposited 2013-12-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–147（147 aa）
|
Not recorded | GOL GLYCEROL × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.50 Å R-free 0.178 |
| 4CJ2 Crystal structure of HEWL in complex with affitin H4 Deposited 2013-12-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–147（147 aa）
|
Not recorded | GOL GLYCEROL × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.50 Å R-free 0.178 |
| 4D9Z Lysozyme at 318K Deposited 2012-01-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 GOL GLYCEROL × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.71 Å R-free 0.228 |
| 4DC4 Lysozyme Trimer Deposited 2012-01-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 2 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å R-free 0.300 |
| 4DC4 Lysozyme Trimer Deposited 2012-01-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å R-free 0.300 |
| 4DC4 Lysozyme Trimer Deposited 2012-01-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 2.65 Å R-free 0.300 |
| 4DD0 EVAL processed HEWL, cisplatin aqueous glycerol Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 13 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with cisplatin in aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.236 |
| 4DD1 EVAL processed HEWL, cisplatin aqueous paratone Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | MEB 2-methylprop-1-ene × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；295 K；HEWL co-crystallized with cisplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.227 |
| 4DD1 EVAL processed HEWL, cisplatin aqueous paratone Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | MEB 2-methylprop-1-ene × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；295 K；HEWL co-crystallized with cisplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.227 |
| 4DD2 EVAL processed HEWL, carboplatin aqueous glycerol Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with carboplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.55 Å R-free 0.245 |
| 4DD3 EVAL processed HEWL, carboplatin aqueous paratone Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 4 MEB 2-methylprop-1-ene × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with carboplatin in 1 mL 0.05 M sodium acetate buffer and 1 mL 10% sodium chloride aqueous media, pH 4.7, BATCH, temperature 295K
|
Resolution 1.70 Å R-free 0.235 |
| 4DD7 EVAL processed HEWL, carboplatin DMSO glycerol Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 7 GOL GLYCEROL × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with carboplatin in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å R-free 0.223 |
| 4DD9 EVAL processed HEWL, carboplatin DMSO paratone Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 14 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with carboplatin in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 1.60 Å R-free 0.236 |
| 4DDA EVAL processed HEWL, NAG Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with 150 mM excess N-acetylglucosamine in 1 mL 0.05 M sodium acetate and 1 mL 10% sodium chloride, pH 4.7, BATCH, temperature 295K
|
Resolution 2.48 Å R-free 0.285 |
| 4DDB EVAL processed HEWL, cisplatin DMSO paratone pH 6.5 Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CPT Cisplatin × 2 DMS DIMETHYL SULFOXIDE × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 6.5；277 K；HEWL co-crystallized with cisplatin in 462.5 uL 0.05 M sodium acetate, pH 6.5, 462.5 uL 10% sodium chloride, and 75 uL DMSO, BATCH, temperature 277K
|
Resolution 3.00 Å R-free 0.280 |
| 4DDC EVAL processed HEWL, cisplatin DMSO NAG silicone oil Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CPT Cisplatin × 2 DMS DIMETHYL SULFOXIDE × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；277 K；HEWL co-crystallized with cisplatin and N-acetylglucosamine in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å R-free 0.253 |
| 4DDC EVAL processed HEWL, cisplatin DMSO NAG silicone oil Deposited 2012-01-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CPT Cisplatin × 2 DMS DIMETHYL SULFOXIDE × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；277 K；HEWL co-crystallized with cisplatin and N-acetylglucosamine in 462.5 uL 0.05 M sodium acetate and 462.5 uL 10% sodium chloride in 75 uL DMSO, pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å R-free 0.253 |
| 4DT3 Crystal structure of zinc-charged lysozyme Deposited 2012-02-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ZN ZINC ION × 3 EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
microbath；pH 4；295 K；0.1M citric acid, 1M NaCl, pH 4.0, microbath, temperature 295K
|
Resolution 1.80 Å R-free 0.208 |
| 4E3U Crystal Structure of Hen Egg White Lysozyme Cryoprotected in Proline Deposited 2012-03-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PRO PROLINE × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；296 K；1.0M sodium chloride, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 296K
|
Resolution 1.50 Å R-free 0.216 |
| 4EOF Lysozyme in the presence of arginine Deposited 2012-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 GOL GLYCEROL × 2 ARG ARGININE × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；Protein 40mg/ml, Sodium acetate 50mM, NaCl 1.7M, Arginine 200mM., pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.83 Å R-free 0.246 |
| 4ET8 Hen egg-white lysozyme solved from 40 fs free-electron laser pulse data Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；293 K；After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), BATCH, temperature 293K
|
Resolution 1.90 Å R-free 0.229 |
| 4ET9 Hen egg-white lysozyme solved from 5 fs free-electron laser pulse data Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；293 K；After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), BATCH, temperature 293K
|
Resolution 1.90 Å R-free 0.227 |
| 4ETA Lysozyme, room temperature, 400 kGy dose Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å R-free 0.180 |
| 4ETB lysozyme, room temperature, 200 kGy dose Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å R-free 0.190 |
| 4ETC Lysozyme, room temperature, 24 kGy dose Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å R-free 0.200 |
| 4ETD Lysozyme, room-temperature, rotating anode, 0.0026 MGy Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.90 Å R-free 0.192 |
| 4ETE Lysozyme, room-temperature, rotating anode, 0.0021 MGy Deposited 2012-04-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；grown in Linbro plates in hanging or sitting drop geometry. Drops of equal volume of protein (20 mg/ml) and reservoir solution (1 M NaAc pH 3.0, 9-10 % NaCl, 6 % PEG 6000) were mixed. For the measurements, the crystals were equilibrated in 1 M NaAc pH 3.4, 10 % NaCl, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.91 Å R-free 0.195 |
| 4FJR Mode of interaction of Merocyanine 540 with HEW Lysozyme Deposited 2012-06-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW Lysozyme, UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 2 0UF 3-[(2E)-2-[(2Z)-4-(1,3-dibutyl-4,6-dioxo-2-thioxotetrahydropyrimidin-5(2H)-ylidene)but-2-en-1-ylidene]-1,3-benzoxazol-3(2H)-yl]propane-1-sulfonic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；7% NaCl in 100mM Na-Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.86 Å R-free 0.246 |
| 4G49 Room temperature X-ray diffraction of cisplatin binding to HEWL in aqueous media after 15 months of crystal storage Deposited 2012-07-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 2 ACT ACETATE ION × 2 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with cisplatin in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.40 Å R-free 0.210 |
| 4G4B Room temperature X-ray diffraction study of cisplatin binding to HEWL in DMSO media with NAG after 7 months of crystal storage Deposited 2012-07-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CPT Cisplatin × 2 DMS DIMETHYL SULFOXIDE × 5 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with cisplatin and NAG in 7.5% DMSO media in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.10 Å R-free 0.227 |
| 4G4C Room temperature X-ray diffraction study of carboplatin binding to HEWL in DMSO media after 13 months of crystal storage Deposited 2012-07-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 QPT carboplatin × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；HEWL co-crystallized with carboplatin (with DMSO added) in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7, BATCH, temperature 295K
|
Resolution 2.00 Å R-free 0.203 |
| 4G4H 100K X-ray diffraction study of carboplatin binding to HEWL in DMSO media after 13 months of crystal storage Deposited 2012-07-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 2 CL CHLORIDE ION × 3 QPT carboplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.7；295 K；49 mg HEWL co-crystallized with 3.7 mg carboplatin in 462.5 uL 0.04 M sodium acetate + 462.5 uL 10% sodium chloride + 75 uL DMSO, pH 4.7, BATCH, temperature 295K
|
Resolution 2.00 Å R-free 0.268 |
| 4GCB 100K X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL Deposited 2012-07-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 7 DMS DIMETHYL SULFOXIDE × 3 CPT Cisplatin × 2 PT PLATINUM (II) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；277 K；49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 1.80 Å R-free 0.210 |
| 4GCC Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 1 Deposited 2012-07-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 4 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；277 K；49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.00 Å R-free 0.248 |
| 4GCD Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 2 Deposited 2012-07-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 3 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；277 K；49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.80 Å R-free 0.240 |
| 4GCE Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 3 Deposited 2012-07-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；277 K；49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 2.90 Å R-free 0.234 |
| 4GCF Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 4 Deposited 2012-07-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PT PLATINUM (II) ION × 2 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；277 K；49 mg HEWL (3.2 mM), 3 mg cisplatin (10 mM), 3.7 mg carboplatin (10 mM) in 0.04 M sodium acetate buffer (462.5 uL) + 10% sodium chloride precipitant (462.5 uL) + 1 mM DMSO (75 uL), pH 4.7, BATCH, temperature 277K
|
Resolution 3.50 Å R-free 0.235 |
| 4GLA OBody NL8 bound to hen egg-white lysozyme Deposited 2012-08-14 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.75 Å R-free 0.296 |
| 4GLA OBody NL8 bound to hen egg-white lysozyme Deposited 2012-08-14 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.75 Å R-free 0.296 |
| 4GLV OBody AM3L09 bound to hen egg-white lysozyme Deposited 2012-08-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PO4 PHOSPHATE ION × 2 GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å R-free 0.245 |
| 4GLV OBody AM3L09 bound to hen egg-white lysozyme Deposited 2012-08-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 6 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å R-free 0.245 |
| 4GLV OBody AM3L09 bound to hen egg-white lysozyme Deposited 2012-08-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PO4 PHOSPHATE ION × 1 GOL GLYCEROL × 7 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å R-free 0.245 |
| 4GLV OBody AM3L09 bound to hen egg-white lysozyme Deposited 2012-08-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain G
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | PO4 PHOSPHATE ION × 2 GOL GLYCEROL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.3；291 K；0.2 M HEPES, 7% MPEG5000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.57 Å R-free 0.245 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 4 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain G
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain I
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain K
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 7 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain M
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 8 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain O
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN3 OBody AM1L10 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 9 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain Q
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 9% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.95 Å R-free 0.228 |
| 4GN4 OBody AM2EP06 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GOL GLYCEROL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；291 K；0.2 M HEPES, 13% MPEG5000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å R-free 0.194 |
| 4GN5 OBody AM3L15 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 GOL GLYCEROL × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 5% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å R-free 0.202 |
| 4GN5 OBody AM3L15 bound to hen egg-white lysozyme Deposited 2012-08-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；291 K；0.2 M HEPES, 5% MPEG5000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.86 Å R-free 0.202 |
| 4H1P Use of Europium for SAD Phasing at the Cu K alpha wavelength Deposited 2012-09-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EU EUROPIUM ION × 2 CL CHLORIDE ION × 14 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Sodium chloride, EuCl3, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, temperature 293.0K
|
Resolution 2.30 Å R-free 0.231 |
| 4H8X Radiation damage study of lysozyme - 0.07 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate buffer and 25% ethylene glycol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.200 |
| 4H8Y Radiation damage study of lysozyme- 0.14 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.208 |
| 4H8Z Radiation damage study of lysozyme - 0.21 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.205 |
| 4H90 Radiation damage study of lysozyme - 0.28 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.205 |
| 4H91 Radiation damage study of lysozyme - 0.35 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.199 |
| 4H92 Radiation damage study of lysozyme- 0.42 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.199 |
| 4H93 Radiation damage study of lysozyme - 0.49 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.202 |
| 4H94 Radiation damage in lysozyme - 0.56 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.207 |
| 4H9A Radiation damage study of lysozyme - 0.63 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.201 |
| 4H9B Radiation damage study of lysozyme - 0.70 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.203 |
| 4H9C Radiation damage study of lysozyme - 0.77 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.204 |
| 4H9E Radiation damage study of lysozyme - 0.84 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.204 |
| 4H9F Radiation damage study of lysozyme - 0.91 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.204 |
| 4H9H Radiation damage study of lysozyme - 0.98 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.202 |
| 4H9I Radiation damage study of lysozyme - 1.05 MGy Deposited 2012-09-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；7.5% sodium chloride, 100 mM sodium acetate pH 4.8, 25% ethylene glycol, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.20 Å R-free 0.203 |
| 4HP0 Crystal Structure of Hen Egg White Lysozyme in complex with GN3-M Deposited 2012-10-23 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；0.2M Magnesium chloride hexahydrate, 0.1M BIS-TRIS(pH6.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.19 Å R-free 0.173 |
| 4HPI Crystal Structure of Hen Egg White Lysozyme complex with GN2-M Deposited 2012-10-23 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；0.2M Magnesium chloride hexahydrate, 0.1M BIS-TRIS(pH6.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.19 Å R-free 0.180 |
| 4HSF Lysozyme with Arginine at 318K Deposited 2012-10-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ARG ARGININE × 2 CL CHLORIDE ION × 4 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl.
Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, 300mM arginine , pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.82 Å R-free 0.225 |
| 4HTK Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 2.17 x 10e+12 X-ray photons Deposited 2012-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.73；293 K；0.100M sodium acetate, pH 4.73, 5% sodium chloride, w/v, 25% ethylene glycol, v/v, micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.20 Å R-free 0.152 |
| 4HTN Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 1.32 x 10e+12 X-ray photons Deposited 2012-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.73；293 K；0.100M sodium acetate, pH 4.73, 5% sodium chloride (w/v), 25% ethylene glycol (v/v), micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.30 Å R-free 0.158 |
| 4HTQ Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 6.70 x 10e+11 X-ray photons Deposited 2012-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.73；293 K；0.100M sodium acetate, pH 4.73, 5% sodium chloride (w/v), 25% ethylene glycol (v/v), micro-seeded, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.40 Å R-free 0.163 |
| 4HV1 Laser-induced microfragmentation of lysozyme crystals allows X-ray nanodiffraction characterization of individual domains (lb4) Deposited 2012-11-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；LB-nanofilms were generated by the Langmuir Blodgett (LB) technique and its variation, a modified Langmuir Schaeffer technique (LS).
40 mg/ml, 50 mM, sodium acetate pH 4.5, 0.9 NaCl 1:1 in 50 mM sodium acetate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.278 |
| 4HV2 Laser-induced microfragmentation of lysozyme crystals allows X-ray nanodiffraction characterization of individual domains (lb5) Deposited 2012-11-05 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；LB-nanofilms were generated by the Langmuir Blodgett (LB) technique and its variation, a modified Langmuir Schaeffer technique (LS).
40 mg/ml, 50 mM, sodium acetate pH 4.5, 0.9 NaCl 1:1 in 50 mM sodium acetate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å R-free 0.319 |
| 4I8S Hen Lysozyme protein crystallization via standard hanging drop vapor diffusion Deposited 2012-12-04 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.00 Å R-free 0.259 |
| 4IAS HEW Lysozyme by langmuir- blodgett modified vapour diffusion Deposited 2012-12-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.60 Å R-free 0.301 |
| 4IAT HEW Lysozyme by langmuir- blodgett modified vapour diffusion Deposited 2012-12-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.242 |
| 4II8 Lysozyme with Benzyl alcohol Deposited 2012-12-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 GOL GLYCEROL × 2 010 phenylmethanol × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；Protein Solution: 20mg/ml lysozyme,50mM sodium acetate, 150mM NaCl,
Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, 2.5% benzyl alcohol, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.88 Å R-free 0.225 |
| 4J1A X-ray structure of the adduct between hen egg white lysozyme and AziRu (green crystal) Deposited 2013-02-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；1.0-1.4 M NaCl, 0.050 M acetate. Crystals soaked in a saturated solution of AziRu containing 2.4 M NaCl in the same buffer. After a few hours, crystals changed their colour to yellow and then green. In a few days they turned to black., pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.79 Å R-free 0.237 |
| 4J1B X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal) Deposited 2013-02-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；1.0-1.4 M NaCl, 0.050 M acetate buffer.Crystals were soaked in a saturated solution of AziRu containing 2.4 M NaCl in the same buffer. After a few hours, crystals changed their colour to yellow and then green. In a few days they turned to black, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.66 Å R-free 0.246 |
| 4J7V Crystal structure of cross-linked hen egg white lysozyme soaked with 5mM [Ru(benzene)Cl2]2 Deposited 2013-02-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 RBN Benzeneruthenium(II) chloride × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.3；293 K；sodium chloride, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.54 Å R-free 0.235 |
| 4KXI Crystallographic study of the complex of Ni(II) Schiff base complex and HEW Lysozyme Deposited 2013-05-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NI NICKEL (II) ION × 1 SNF (N1E, N2E)-N1, N2-bis(pyridine-2-ylmethylene)propane-1,2-diamine, nickel(II) salt × 1 LCP PERCHLORATE ION × 5 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；Ni-Schiff-base solution , pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å R-free 0.256 |
| 4LFP X-ray structure of the adduct between hen egg white lysozyme and a homoleptic gold(I) complex with the saccharynate ligand Deposited 2013-06-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU GOLD ION × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.72 Å R-free 0.236 |
| 4LFX X-ray structure of the adduct between hen egg white lysozyme and Auoxo6, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers Deposited 2013-06-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 AU GOLD ION × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å R-free 0.281 |
| 4LGK X-ray structure of the adduct between hen egg white lysozyme and Au2Phen, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers Deposited 2013-06-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU GOLD ION × 1 CL CHLORIDE ION × 3 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.96 Å R-free 0.300 |
| 4LT0 HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 1 processed using the EVAL software package Deposited 2013-07-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 4 QPT carboplatin × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；294 K；2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.10 Å R-free 0.283 |
| 4LT1 HEWL co-crystallised with Carboplatin in non-NaCl conditions: crystal 1 processed using the XDS software package Deposited 2013-07-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | DMS DIMETHYL SULFOXIDE × 7 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 QPT carboplatin × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；294 K；2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.30 Å R-free 0.248 |
| 4LT2 HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the EVAL software package Deposited 2013-07-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 5 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；294 K；2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 5 weeks after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.00 Å R-free 0.265 |
| 4LT3 HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the XDS software package Deposited 2013-07-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 DMS DIMETHYL SULFOXIDE × 4 QPT carboplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；294 K；2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 5 weeks after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.00 Å R-free 0.258 |
| 4LYB CdS within a lysoyzme single crystal Deposited 2013-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CD CADMIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K , temperature 298.0K
|
Resolution 1.21 Å |
| 4LYB CdS within a lysoyzme single crystal Deposited 2013-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CD CADMIUM ION × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K , temperature 298.0K
|
Resolution 1.21 Å |
| 4LYC Cd ions within a lysoyzme single crystal Deposited 2013-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CD CADMIUM ION × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K, temperature 298.0K
|
Resolution 1.35 Å |
| 4LYC Cd ions within a lysoyzme single crystal Deposited 2013-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CD CADMIUM ION × 18 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.5；298 K；6.5% NaCl (w/v) in 0.1 M sodium acetate, pH 4.5, EVAPORATION, temperature 298K, temperature 298.0K
|
Resolution 1.35 Å |
| 4LYM CRYSTAL STRUCTURE OF LOW HUMIDITY TETRAGONAL LYSOZYME AT 2.1-ANGSTROMS RESOLUTION. VARIABILITY IN HYDRATION SHELL AND ITS STRUCTURAL CONSEQUENCES Deposited 1990-07-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 4LYO CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN NEAT ACETONITRILE, THEN BACK-SOAKED IN WATER Deposited 1998-03-11 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.3；PROTEIN WAS CRYSTALLIZED FROM SODIUM ACETATE BUFFER (PH 4.3) CONTAINING 6.0% (W/V) SODIUM CHLORIDE
|
Resolution 2.05 Å R-free 0.193 |
| 4LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 4LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 4LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 4LZT ATOMIC RESOLUTION REFINEMENT OF TRICLINIC HEW LYSOZYME AT 295K Deposited 1997-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch method；pH 4.5；BATCH METHOD USED. 1% PROTEIN SOLUTION IN 100MM SODIUM ACETATE PH 4.5-4.6. SODIUM NITRATE ADDED TO A CONCENTRATION OF 20MGS/ML. CRYSTALS GROWN AT ROOM TEMPERATURE., batch method
|
Resolution 0.95 Å R-free 0.147 |
| 4M4O Crystal structure of the aptamer minE-lysozyme complex Deposited 2013-08-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；298 K；0.17M Sodium Acetate, 0.085M Tris-HCl, pH 8.5, 25.5% PEG-4000, 15% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.207 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain E
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain G
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 5 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain I
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4M6D Crystal structure of the aptamer minF-lysozyme complex. Deposited 2013-08-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 6 Protein–RNA Monomer；Protein × 1 PDB declaration: dimeric |
Chain K
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；1.1M Malonic Acid, 0.15 M Ammonium Citrate
Tribasic, 0.072 M Succinic Acid, 0.18 M DL-Malic Acid, 0.24 M Sodium Acetate, 0.3 M
Sodium Formate, 0.096 M Ammonium Tartrate
Dibasic, Final pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.68 Å R-free 0.216 |
| 4MR1 X-ray structure of the adduct between hen egg white lysozyme and cis-diamminediiodoplatinum(II) Deposited 2013-09-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | YPT cis-diamino(diiodo)platinum × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.2；298 K；HEWL crystals were grown at 293 K using the hanging drop vapour diffusion method. The reservoir (600 UL) contained 20 mM sodium acetate buffer at pH 4.2 and 1.0 M NaCl; the drop (0.5+0.5 UL) contained hen egg white lysozyme (10 mg mL-1) in the same acetate buffer (5mM) and reservoir solution. Crystals grow in 1 day. After 5 days, HEWL crystals were soaked in a DMSO solution of cis-PtI2(NH3)2. Final concentration of the metal complex in solution was >10 times higher than HEWL, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å R-free 0.234 |
| 4N0J Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 1.9 A resolution Deposited 2013-10-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
20–147（128 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2 CL CHLORIDE ION × 1 GOL GLYCEROL × 3 NA SODIUM ION × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.1；293.15 K；6 % PEG 8000, 100 mM, MAGNESIUM CHLORIDE, 50 mM SODIUM CHLORIDE, 100 mM SODIUM CACODYLATE, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.90 Å R-free 0.210 |
| 4N0J Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 1.9 A resolution Deposited 2013-10-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
20–147（128 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2 CL CHLORIDE ION × 2 GOL GLYCEROL × 2 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.1；293.15 K；6 % PEG 8000, 100 mM, MAGNESIUM CHLORIDE, 50 mM SODIUM CHLORIDE, 100 mM SODIUM CACODYLATE, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.90 Å R-free 0.210 |
| 4N1C Structural evidence for antigen receptor evolution Deposited 2013-10-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.5；293 K；0.2 M ammonium acetate, 0.1 M BisTris (pH 5.5), 25% PEG3350, vapor diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.70 Å R-free 0.233 |
| 4N1E Structural evidence for antigen receptor evolution Deposited 2013-10-04 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain I
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å R-free 0.265 |
| 4N1E Structural evidence for antigen receptor evolution Deposited 2013-10-04 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain J
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å R-free 0.265 |
| 4N1E Structural evidence for antigen receptor evolution Deposited 2013-10-04 | Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain K
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å R-free 0.265 |
| 4N1E Structural evidence for antigen receptor evolution Deposited 2013-10-04 | Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain L
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.2 M sodium formate, 18% (w/v) PEG3350, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.23 Å R-free 0.265 |
| 4N5R Hen egg-white lysozyme phased using free-electron laser data Deposited 2013-10-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å R-free 0.256 |
| 4N8Z In situ lysozyme crystallized on a MiTeGen micromesh with benzamidine ligand Deposited 2013-10-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
In situ crystallization on micromesh；pH 4.6；290 K；4% sodium chloride, 100mM sodium acetate pH 4.6, 120mg/ml, In situ crystallization on micromesh, temperature 290K
|
Resolution 1.20 Å R-free 0.251 |
| 4N9R X-ray structure of the complex between hen egg white lysozyme and pentacholrocarbonyliridate(III) (1 day) Deposited 2013-10-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；Crystals of the complex have been obtained by soaking pre-grown HEWL crystals in a satured solution of Ir(Cl)5CO for 1 day, pH 4.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.55 Å R-free 0.194 |
| 4NEB Previously de-ionized HEW lysozyme batch crystallized in 0.5 M MnCl2 Deposited 2013-10-29 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | MN MANGANESE (II) ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 0.5 M MnCl2, pH 4.5, batch crystallization, temperature 293K
|
Resolution 1.48 Å R-free 0.151 |
| 4NFV Previously de-ionized HEW lysozyme batch crystallized in 1.1 M MnCl2 Deposited 2013-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MN MANGANESE (II) ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 1.1 M MnCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.63 Å R-free 0.179 |
| 4NG1 Previously de-ionized HEW lysozyme batch crystallized in 1.9 M CsCl Deposited 2013-11-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | CS CESIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 1.9 M CsCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.82 Å R-free 0.190 |
| 4NG8 Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K. Deposited 2013-11-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | CS CESIUM ION × 7 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Dialyzed lysozyme, no buffer added, 1.9 M CsCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.09 Å R-free 0.176 |
| 4NGI Previously de-ionized HEW lysozyme crystallized in 1.0 M RbCl and collected at 125K Deposited 2013-11-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | RB RUBIDIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 1.0 M RbCl, 30% (v/v) glycerol, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å R-free 0.215 |
| 4NGJ Dialyzed HEW lysozyme batch crystallized in 1.0 M RbCl and collected at 100 K Deposited 2013-11-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | RB RUBIDIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Dialyzed lysozyme, no buffer added, 1.0 M RbCl, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.10 Å R-free 0.173 |
| 4NGK Previously de-ionized HEW lysozyme batch crystallized in 0.2 M CoCl2 Deposited 2013-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CO COBALT (II) ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 0.2 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.50 Å R-free 0.159 |
| 4NGL Previously de-ionized HEW lysozyme batch crystallized in 0.6 M CoCl2 Deposited 2013-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CO COBALT (II) ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 0.6 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.52 Å R-free 0.163 |
| 4NGO Previously de-ionized HEW lysozyme batch crystallized in 1.0 M CoCl2 Deposited 2013-11-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | CO COBALT (II) ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 1.0 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.58 Å R-free 0.176 |
| 4NGV Previously de-ionized HEW lysozyme batch crystallized in 0.5 M YbCl3 Deposited 2013-11-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：HEW LYSOZYME
|
Not recorded | YB YTTERBIUM (III) ION × 3 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 0.5 M YbCl3, pH 4.5, Batch crystallization, temperature 293K
|
Resolution 1.64 Å R-free 0.186 |
| 4NGW Dialyzed HEW lysozyme batch crystallized in 0.5 M YbCl3 and collected at 100 K Deposited 2013-11-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | YB YTTERBIUM (III) ION × 3 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Dialyzed lysozyme, no buffer added, 0.5 M YbCl3, pH 4.5, Batch crystallization, EVAPORATION, temperature 293K
|
Resolution 1.37 Å R-free 0.188 |
| 4NGY Dialyzed HEW lysozyme batch crystallized in 0.75 M YbCl3 and collected at 100 K Deposited 2013-11-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | YB YTTERBIUM (III) ION × 3 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Dialyzed lysozyme, no buffer added, 0.75 M YbCl3, pH 4.5, EVAPORATION, temperature 293K
|
Resolution 1.35 Å R-free 0.216 |
| 4NGZ Previously de-ionized HEW lysozyme crystallized in 0.5 M YbCl3/30% (v/v) glycerol and collected at 125K Deposited 2013-11-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | YB YTTERBIUM (III) ION × 3 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；293 K；Previously de-ionized lysozyme, no buffer added, 0.5 M YbCl3, 30% (v/v) glycerol , pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å R-free 0.205 |
| 4NHI Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate Deposited 2013-11-05 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；277 K；80mg/ml hen egg-white lysozyme, 100mM TrisHCl, 0.4M Mg-Formate(0.2~0.6 M), pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.34 Å R-free 0.218 |
| 4NHP X-ray structure of the complex between the hen egg white lysozyme and pentachlorocarbonyliridate (III) (4 days) Deposited 2013-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 3 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Ir(Cl)5CO, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.42 Å R-free 0.227 |
| 4NHQ X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (5 days) Deposited 2013-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 3 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Ir(Cl)5CO for 5 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.92 Å R-free 0.260 |
| 4NHS X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (9 days) Deposited 2013-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Ir(Cl)5CO for 9 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å R-free 0.299 |
| 4NHT X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (6 days) Deposited 2013-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 5 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Ir(Cl)5CO for 6 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.228 |
| 4NIJ X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (30 days) Deposited 2013-11-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 2T8 carbonyl(tetrachloro)oxidoiridium × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Ir(Cl)5CO for 30 days, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.86 Å R-free 0.257 |
| 4NSG Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 1.5418A Deposited 2013-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 9 NA SODIUM ION × 1 DMS DIMETHYL SULFOXIDE × 4 ACT ACETATE ION × 5 QPT carboplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch；pH 4.7；294 K；20mg HEWL co-crystallised with 1.4mg carboplatin with 75 l DMSO, 462.5 l 0.1M NaAc and 462.5 l 1M NaBr solution., pH 4.7, Batch, temperature 294K
|
Resolution 2.00 Å R-free 0.271 |
| 4NSH Carboplatin binding to HEWL in 0.2M NH4SO4, 0.1M NaAc in 25% PEG 4000 at pH 4.6 Deposited 2013-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 3 ACT ACETATE ION × 3 QPT carboplatin × 2 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added with 75 l DMSO. 2 l of this mixed with 2 l resevoir soultion 0.2M NH4SO4, 0.1M NaAc in 25% PEG 4000 at pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.10 Å R-free 0.262 |
| 4NSI Carboplatin binding to HEWL in 20% propanol, 20% PEG 4000 at pH5.6 Deposited 2013-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 3 QPT carboplatin × 2 FLC CITRATE ANION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；298 K；20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added along with 75 l DMSO. 2 l of this was mixed with 2 l of resevoir solution 20% PEG 4000 at pH5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.285 |
| 4NSJ Carboplatin binding to HEWL in 2M NH4formate, 0.1M HEPES at pH 7.5 Deposited 2013-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 8 FMT FORMIC ACID × 13 NA SODIUM ION × 1 QPT carboplatin × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；20mg of HEWL (0.6mM) was dissolved in 1ml distilled water. 1.4mg of carboplatin (1.8mM) was added with 75 l DMSO. 2 l of this was mixed with 2 l of resevoir solution 2M NH4formate, 0.1M HEPES at pH 7.5 , VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å R-free 0.258 |
| 4NWE Lysozyme UNDER 30 BAR PRESSURE OF NITROUS OXIDE Deposited 2013-12-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | N2O NITROUS OXIDE × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.6；300 K；0.1M sodium acetate, 0.6-1.1M NaCl, pH 4.6, BATCH, temperature 300K
|
Resolution 1.58 Å R-free 0.200 |
| 4NWH Lysozyme UNDER 30 BAR PRESSURE OF XENON Deposited 2013-12-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 XE XENON × 2 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH；pH 4.6；300 K；0.1M sodium acetate, 0.6-1.1M NaCl, pH 4.6, BATCH, temperature 300K
|
Resolution 1.65 Å R-free 0.208 |
| 4NY5 X-ray structure of the adduct formed between hen egg white lysozyme and NAMI-A Deposited 2013-12-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RU RUTHENIUM ION × 2 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Crystals of the HEWL/NAMI-A adduct suitable for X-ray diffraction studies Have been grown by hanging drop vapor diffusion by mixing 1 L of 20 mg/mL HEWL/NAMI-A complex (protein to metal ratio 1:10) with an equal volume of reservoir solution containing 1.0 M NaCl and 50 mM sodium acetate pH 4.5. These crystals were fished with nylon loops and flash-frozen at 100 K using nitrogen gas, without cryoprotectant. This procedure partly dehydrates the crystals, enhancing in some cases the resolution of X-ray diffraction data, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.85 Å R-free 0.240 |
| 4O34 Room temperature macromolecular serial crystallography using synchrotron radiation Deposited 2013-12-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；14.7 % (w/v) NaCl, 22 % (w/v) PEG 8000, 500 mM acetate buffer pH 3, 100 mg/ml lysozyme, batch, temperature 293K
|
Resolution 2.09 Å R-free 0.230 |
| 4OOO X-ray structure of the lysozyme derivative of tetrakis(acetato)chlorido diruthenium(II,III) complex Deposited 2014-02-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 RU0 Tetrakis(acetato)chloridodiruthenium(II,III) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.2；Crystals of HEWL in the presence of the diruthernium compound (1:10 ratio) suitable for X-ray diffraction were grown at 293 K using the hanging drop vapour diffusion method, 1.0-1.2 mol L-1 NaCl as a precipitating agent in 0.050 mol L-1 acetate buffer at pH 4.2 and protein concentration 15 mg mL-1. , VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.15 Å R-free 0.254 |
| 4OOT X-ray structure of the protein-gold adduct formed upon reaction of Aubipic with hen egg white lysozyme Deposited 2014-02-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AU GOLD ION × 1 EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；crystal of lysozyme have been obtained in the presence of Aubipyc (1:10 protein to metal ratio) via the hanging drop vapor diffusion method. These crystals have been grown using a reservoir solution of 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.244 |
| 4OWA Carboplatin binding to HEWL under sodium iodide crystallisation conditions Deposited 2014-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 19 QPT carboplatin × 2 DMS DIMETHYL SULFOXIDE × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；20mg HEWL co-crystallised with 1.4mg carboplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaI solution
|
Resolution 1.80 Å R-free 0.241 |
| 4OWA Carboplatin binding to HEWL under sodium iodide crystallisation conditions Deposited 2014-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 13 QPT carboplatin × 1 DMS DIMETHYL SULFOXIDE × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；20mg HEWL co-crystallised with 1.4mg carboplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaI solution
|
Resolution 1.80 Å R-free 0.241 |
| 4OWB Cisplatin binding to HEWL under sodium bromide crystallisation conditions Deposited 2014-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 2 ACT ACETATE ION × 2 NA SODIUM ION × 1 MEB 2-methylprop-1-ene × 1 BR BROMIDE ION × 8 PT PLATINUM (II) ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；20mg HEWL co-crystallised with 1.2mg cisplatin with 75?l DMSO, 462.5?l 0.1M NaAc and 462.5?l 1M NaBr solution
|
Resolution 1.69 Å R-free 0.266 |
| 4OWC PtI6 binding to HEWL Deposited 2014-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 8 PT PLATINUM (II) ION × 2 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtI6 (10mM).
|
Resolution 1.62 Å R-free 0.193 |
| 4OWE PtCl6 binding to HEWL Deposited 2014-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 17 PT PLATINUM (II) ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtCl6 (10mM)
|
Resolution 1.41 Å R-free 0.223 |
| 4OWH PtBr6 binding to HEWL Deposited 2014-02-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 6BP HEXABROMOPLATINATE(IV) × 2 BR BROMIDE ION × 2 CL CHLORIDE ION × 9 ACT ACETATE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.7；295 K；HEWL (60 mg) was dissolved in 0.04 M acetate buffer, pH 4.7 (1 mL) and 10% NaCl (1 mL) was added to the solution. HEWL crystals were soaked for 24hrs in a solution of K2PtBr6 (10mM)
|
Resolution 1.48 Å R-free 0.223 |
| 4P2E Acoustic transfer of protein crystals from agar pedestals to micromeshes for high throughput screening of heavy atom derivatives Deposited 2014-03-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 CU COPPER (II) ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；291 K；0.2M sodium acetate pH4.6, 8% sodium chloride
|
Resolution 1.60 Å R-free 0.194 |
| 4PGJ Human heavy-chain domain antibody in complex with hen egg-white lysozyme Deposited 2014-05-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.4；293 K；Protein at 4.4 mg/mL in 50 mM Tris (pH 7.5) amd 150 mM NaCl. Well solution contained 28% (w/v) PEG1500, 100 mM Na-citrate (pH 5.4). 400 nL of well solution and protein solution were combined.
|
Resolution 2.60 Å R-free 0.287 |
| 4PGJ Human heavy-chain domain antibody in complex with hen egg-white lysozyme Deposited 2014-05-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.4；293 K；Protein at 4.4 mg/mL in 50 mM Tris (pH 7.5) amd 150 mM NaCl. Well solution contained 28% (w/v) PEG1500, 100 mM Na-citrate (pH 5.4). 400 nL of well solution and protein solution were combined.
|
Resolution 2.60 Å R-free 0.287 |
| 4PHI Crystal structure of HEWL with hexatungstotellurate(VI) Deposited 2014-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TEW 6-tungstotellurate(VI) × 2 NA SODIUM ION × 1 GOL GLYCEROL × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å R-free 0.200 |
| 4PHI Crystal structure of HEWL with hexatungstotellurate(VI) Deposited 2014-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
19–147（129 aa）
Chain B
19–147（129 aa）
Chain C
19–147（129 aa）
Chain D
19–147（129 aa）
|
Not recorded | TEW 6-tungstotellurate(VI) × 8 NA SODIUM ION × 6 GOL GLYCEROL × 1 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å R-free 0.200 |
| 4PHI Crystal structure of HEWL with hexatungstotellurate(VI) Deposited 2014-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | TEW 6-tungstotellurate(VI) × 5 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å R-free 0.200 |
| 4PHI Crystal structure of HEWL with hexatungstotellurate(VI) Deposited 2014-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å R-free 0.200 |
| 4PHI Crystal structure of HEWL with hexatungstotellurate(VI) Deposited 2014-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
19–147（129 aa）
|
Not recorded | TEW 6-tungstotellurate(VI) × 1 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；1.2 M sodium chloride, 0.1 M sodium acetate pH 4.8
|
Resolution 1.81 Å R-free 0.200 |
| 4PPO First Crystal Structure for an Oxaliplatin-Protein Complex Deposited 2014-02-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 7 1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；Crystals of HEWL in the presence of Oxaliplatin (protein to metal drug ratio 1:10, incubation time=24 h) have been grown by hanging drop vapour diffusion method using a reservoir solution of 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.73 Å R-free 0.235 |
| 4PRQ CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION Deposited 2014-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2 PG4 TETRAETHYLENE GLYCOL × 1 P6G HEXAETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å R-free 0.222 |
| 4PRQ CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION Deposited 2014-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 3 PG4 TETRAETHYLENE GLYCOL × 2 PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE × 1 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å R-free 0.222 |
| 4PRQ CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION Deposited 2014-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
|
Not recorded | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å R-free 0.222 |
| 4PRQ CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION Deposited 2014-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
19–147（129 aa）
|
Not recorded | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；24 % PEG 8000, 100 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CHLORIDE, 50 MM SODIUM CACODYLATE, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
|
Resolution 1.72 Å R-free 0.222 |
| 4PRU Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution Deposited 2014-03-06 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；18 % PEG 8000
100 mM MAGNESIUM CHLORIDE,
50 mM SODIUM CHLORIDE,
50 mM SODIUM CACODYLATE PH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15 K
|
Resolution 2.20 Å R-free 0.235 |
| 4PRU Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution Deposited 2014-03-06 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | T3Y 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.3；293.15 K；18 % PEG 8000
100 mM MAGNESIUM CHLORIDE,
50 mM SODIUM CHLORIDE,
50 mM SODIUM CACODYLATE PH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.15 K
|
Resolution 2.20 Å R-free 0.235 |
| 4QEQ High resolution structure of egg white lysozyme Deposited 2014-05-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.9；293 K；9% w/v sodium chloride, 0.1 M sodium acetate, pH 4.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.38 Å R-free 0.182 |
| 4QGZ X-ray structure of the adduct formed between hen egg white lysozyme and trans-dimethylamine methylamine dichlorido platinum(II) Deposited 2014-05-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | I83 bis(chloranyl)-(dimethylamino)-(methylamino)platinum × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.51 Å R-free 0.259 |
| 4QY9 X-ray structure of the adduct between hen egg white lysozyme and Auoxo3, a cytotoxic gold(III) compound Deposited 2014-07-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NO3 NITRATE ION × 4 EDO 1,2-ETHANEDIOL × 2 NA SODIUM ION × 1 AU GOLD ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1 M sodium chloride, 0.05 M sodium acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.05 Å R-free 0.289 |
| 4R0F Structure of Lysozyme Dimer at 318K Deposited 2014-07-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；Protein Solution: 40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl, Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.94 Å R-free 0.239 |
| 4R0F Structure of Lysozyme Dimer at 318K Deposited 2014-07-31 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.8；318 K；Protein Solution: 40mg/ml lysozyme, 50mM sodium acetate, 150mM NaCl, Reservoir Solution: 50mM sodium acetate, 1-1.5M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 318K
|
Resolution 1.94 Å R-free 0.239 |
| 4R6C X-ray diffraction in temporally and spatially resolved biomolecular science: the X-ray crystal structure of hen egg white lysozyme cocrystallized with Ta6Br12 and then a crystal soaked in K2PtBr6 Deposited 2014-08-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TBR HEXATANTALUM DODECABROMIDE × 2 6BP HEXABROMOPLATINATE(IV) × 2 BR BROMIDE ION × 1 CL CHLORIDE ION × 12 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
Batch；pH 4.5；293 K；NaCl; Ta6Br12 2mM. A crystal was soaked in K2PtBr6 10mM., pH 4.5, Batch, temperature 293K
|
Resolution 1.70 Å R-free 0.230 |
| 4RDS Lysozyme crystallized with red food coloring dye Deposited 2014-09-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NA SODIUM ION × 3 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；1.2M NaCl, 25% Ethylene Glycol, 50mM NaOAc(pH 4.5), schilling Red Food coloring dye., VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.23 Å R-free 0.173 |
| 4RLM Hen egg-white lysozyme solved from serial crystallography at a synchrotron source, data processed with CrystFEL Deposited 2014-10-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；293 K；20% (w/v) NaCl, 6% (w/v) PEG6000, 0.5 M NaCl, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.243 |
| 4RLN Hen egg-white lysozyme solved from serial crystallography at a synchrotron source, data processed with nXDS Deposited 2014-10-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.5；293 K；20% (w/v) NaCl, 6% (w/v) PEG6000, 0.5 M NaCl, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.17 Å R-free 0.238 |
| 4RW1 Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: original beam Deposited 2014-12-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4), batch, temperature 293K
|
Resolution 1.90 Å R-free 0.256 |
| 4RW2 Hen egg-white lysozyme structure from a spent-beam experiment at LCLS: refocused beam Deposited 2014-12-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
batch；pH 3；293 K；After crystallization, the solution used for growing the crystals (20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0) was exchanged for storage solution (10 % NaCl, 1.0 M Na acetate pH 3.4)
, batch, temperature 293K
|
Resolution 2.30 Å R-free 0.251 |
| 4TSA Structure of a lysozyme FAb complex Deposited 2014-06-18 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: Trimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；PCTP 100mM pH 6.5, 25% Peg10k
|
Resolution 2.27 Å R-free 0.310 |
| 4TSB Structure of a lysozyme antibody complex Deposited 2014-06-18 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: Trimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM PCPT pH 5.5, 200mM MgCl2, 22 % w/v PEG 3350
|
Resolution 1.95 Å R-free 0.227 |
| 4TSC Structure of a lysozyme antibody complex Deposited 2014-06-18 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: Trimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM PCTP pH 8.5, 25% w/v Peg3350 Magnesium Chloride 200mM
|
Resolution 1.92 Å R-free 0.232 |
| 4TTD Structure of a lysozyme antibody complex Deposited 2014-06-20 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain A
19–147（129 aa）
Fragment：Residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM PCTP pH 4.5, 25% w/v Peg3350, ethanol 5%
|
Resolution 2.15 Å R-free 0.279 |
| 4TTD Structure of a lysozyme antibody complex Deposited 2014-06-20 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain B
19–147（129 aa）
Fragment：Residues 19-147
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM PCTP pH 4.5, 25% w/v Peg3350, ethanol 5%
|
Resolution 2.15 Å R-free 0.279 |
| 4TUN Crystal structure of Chicken egg white lysozyme adduct with Organophosphorus pesticide Monochrotophos Deposited 2014-06-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | MVH methyl [4-(methylamino)-4-oxidanylidene-but-2-en-2-yl] hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；289 K；Sodium Acetate, Sodium Chloride
|
Resolution 1.93 Å R-free 0.229 |
| 4TUN Crystal structure of Chicken egg white lysozyme adduct with Organophosphorus pesticide Monochrotophos Deposited 2014-06-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | MVH methyl [4-(methylamino)-4-oxidanylidene-but-2-en-2-yl] hydrogen phosphate × 1 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；289 K；Sodium Acetate, Sodium Chloride
|
Resolution 1.93 Å R-free 0.229 |
| 4TWS Gadolinium Derivative of Tetragonal Hen Egg-White Lysozyme at 1.45 A Resolution Deposited 2014-07-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | GD GADOLINIUM ATOM × 3 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 3 CL CHLORIDE ION × 13 NA SODIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；294 K；Tetragonal crystals were grown by the vapour-diffusion technique using the hanging-drop method, with 0.7-1.0 M sodium chloride and 50 mM sodium acetate buffer at pH 4.5. Derivative crystals containing gadolinium were obtained using concentrations of Gd-HPDO3A in the range 10-100 mM.
|
Resolution 1.45 Å R-free 0.161 |
| 4U3X Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme Deposited 2014-07-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；300 mM sodium citrate, 16% PEG 3350
|
Resolution 2.26 Å R-free 0.248 |
| 4U3X Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme Deposited 2014-07-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；300 mM sodium citrate, 16% PEG 3350
|
Resolution 2.26 Å R-free 0.248 |
| 4UWN Lysozyme soaked with a ruthenium based CORM with a methione oxide ligand (complex 6b) Deposited 2014-08-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 RU RUTHENIUM ION × 4 CMO CARBON MONOXIDE × 2 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.67 Å R-free 0.212 |
| 4UWU Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 7) Deposited 2014-08-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 FMT FORMIC ACID × 1 CMO CARBON MONOXIDE × 3 RU RUTHENIUM ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.78 Å R-free 0.195 |
| 4UWV Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 8) Deposited 2014-08-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 RU RUTHENIUM ION × 3 CMO CARBON MONOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；2-10% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML. HANGING DROP VAPOR DIFFUSION METHOD, 293K
|
Resolution 1.77 Å R-free 0.222 |
| 4W94 Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 Deposited 2014-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMF DIMETHYLFORMAMIDE × 1 CL CHLORIDE ION × 9 NA SODIUM ION × 1 RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 3 RU RUTHENIUM ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；NaCl, sodium acetate
|
Resolution 1.55 Å R-free 0.222 |
| 4W96 Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution Deposited 2014-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMF DIMETHYLFORMAMIDE × 1 CL CHLORIDE ION × 8 NA SODIUM ION × 1 RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 1 RU RUTHENIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；NaCl, sodium acetate
|
Resolution 1.50 Å R-free 0.227 |
| 4WG1 Room temperature crystal structure of lysozyme determined by serial synchrotron crystallography (micro focused beam - crystFEL) Deposited 2014-09-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.70 Å R-free 0.255 |
| 4WG7 Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a nano focused beam. Deposited 2014-09-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.70 Å R-free 0.239 |
| 4WL6 Raster-scanning protein crystallography using micro and nano-focused synchrotron beams Deposited 2014-10-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；293 K；50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.85 Å R-free 0.271 |
| 4WL7 Room-temperature crystal structure of lysozyme determined by serial synchrotron crystallography using a micro focused beam (Conventional resolution cut-off) Deposited 2014-10-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；50mM Sodium acetate pH 4.5, 16% PEG 4K, 3.5M NaCl
|
Resolution 1.95 Å R-free 0.264 |
| 4WLD High pressure protein crystallography of hen egg white lysozyme at 0.1 MPa Deposited 2014-10-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；sodium chloride
|
Resolution 1.54 Å R-free 0.179 |
| 4WLT High pressure protein crystallography of hen egg white lysozyme at 190 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.197 |
| 4WLX High pressure protein crystallography of hen egg white lysozyme at 280 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.193 |
| 4WLY High pressure protein crystallography of hen egg white lysozyme at 380 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.62 Å R-free 0.194 |
| 4WM1 High pressure protein crystallography of hen egg white lysozyme at 500 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.208 |
| 4WM2 High pressure protein crystallography of hen egg white lysozyme at 600 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.201 |
| 4WM3 High pressure protein crystallography of hen egg white lysozyme at 710 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.55 Å R-free 0.259 |
| 4WM4 High pressure protein crystallography of hen egg white lysozyme at 800 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.224 |
| 4WM5 High pressure protein crystallography of hen egg white lysozyme at 890 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.60 Å R-free 0.217 |
| 4WM6 High pressure protein crystallography of hen egg white lysozyme at 950 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.85 Å R-free 0.284 |
| 4WM6 High pressure protein crystallography of hen egg white lysozyme at 950 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.85 Å R-free 0.284 |
| 4WM6 High pressure protein crystallography of hen egg white lysozyme at 950 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.85 Å R-free 0.284 |
| 4WM6 High pressure protein crystallography of hen egg white lysozyme at 950 MPa Deposited 2014-10-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.85 Å R-free 0.284 |
| 4WMG Structure of hen egg-white lysozyme from a microfludic harvesting device using synchrotron radiation (2.5A) Deposited 2014-10-08 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；294 K；15% sodium chloride, 6% poly-ethylene glycol 8000 and 0.5M sodium acetate
|
Resolution 2.50 Å R-free 0.306 |
| 4WO6 Lysozyme Pre-surface acoustic wave Deposited 2014-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.6；277 K；1 M NaCl, 25% Glycerol, 0.1 M Na Acetate, pH 4.6, gentle agitation
|
Resolution 2.00 Å R-free 0.209 |
| 4WO9 Lysozyme Post-Surface Acoustic Waves Deposited 2014-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.6；277 K；1M NaCl, 25% Glycerol, 0.1 M Na Acetate, pH 4.6, gentle agitation
|
Resolution 1.99 Å R-free 0.202 |
| 4WOA Lysozyme Multiple Crystals After Surface Acoustic Wave Alignment Deposited 2014-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.6；277 K；1 M NaCl, 0.1 M Na Acetate, 25% Glycerol, gentle agitation
|
Resolution 1.80 Å R-free 0.228 |
| 4X3B A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering Deposited 2014-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: Monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4；293 K；0.1 M Sodium Acetate pH 4.0, 8% (w/v) NaCl
|
Resolution 2.10 Å R-free 0.229 |
| 4XAD Crystal structure of hen egg white lysozyme in complex with Galf-GlcNAc Deposited 2014-12-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；100 mM NaOAc, 1.5 M NaCl
|
Resolution 1.25 Å R-free 0.168 |
| 4XEN High pressure protein crystallography of hen egg white lysozyme in complex with Tetra-N-acetylchitotetraose at 920 MPa Deposited 2014-12-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.55 Å R-free 0.210 |
| 4XJB X-ray structure of Lysozyme1 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1 M NaCl, 50-100 mM CH3COONa, pH4.5, and 15-30% PEG 400
|
Resolution 1.80 Å R-free 0.213 |
| 4XJD X-ray structure of Lysozyme2 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1 M NaCl, 50-100 mM CH3COONa, pH4.5, and 15-30% PEG 400
|
Resolution 1.80 Å R-free 0.267 |
| 4XJF X-ray structure of Lysozyme B1 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；1M NaBr, 50-100 mM CH3COONa, pH4.5, 15-30% pEG 400
|
Resolution 1.80 Å R-free 0.207 |
| 4XJG X-ray structure of Lysozyme B2 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；1M NaBr, 50-100 mM CH3COONa, pH4.5, 15-30% pEG 400
|
Resolution 1.80 Å R-free 0.243 |
| 4XJH X-ray structure of LysozymeS1 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1M NaCl, 50-100 mM CH3COONa, pH4.5, 15-30% PEG 400
|
Resolution 2.00 Å R-free 0.204 |
| 4XJI X-ray structure of LysozymeS2 Deposited 2015-01-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1M NaCl, 50-100 mM CH3COONa, pH4.5, 15-30% PEG 400
|
Resolution 2.00 Å R-free 0.210 |
| 4XN6 Crystal structure at room temperature of hen-egg lysozyme in complex with benzamidine Deposited 2015-01-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: Monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BEN BENZAMIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；298 K；NaOAc 100mM
,4% (w/v) NaCl
|
Resolution 1.35 Å R-free 0.166 |
| 4XYY Hen Egg-White Lysozyme (HEWL) complexed with Zr(IV)-substituted Keggin-type polyoxometalate Deposited 2015-02-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ZKG ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN × 1 DMS DIMETHYL SULFOXIDE × 1 EDN ETHANE-1,2-DIAMINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；289 K；0.1 M Sodium HEPES pH 7.5, 2.0 M Ammonium sulphate
|
Resolution 1.38 Å R-free 0.184 |
| 4YEM Carboplatin binding to HEWL in NaBr crystallisation conditions studied at an X-ray wavelength of 0.9163A - new refinement Deposited 2015-02-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 3 BR BROMIDE ION × 16 NA SODIUM ION × 1 DMS DIMETHYL SULFOXIDE × 2 ACT ACETATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；297 K；co-crystallizing 20 mg ml HEWL with 1.4 mg carboplatin in 75 ml DMSO, 462.5 ml 0.1 M sodium acetate, 462.5 ml 1 M NaBr solution.
|
Resolution 1.47 Å R-free 0.156 |
| 4YEN Room temperature X-ray diffraction studies of cisplatin binding to HEWL in DMSO media after 14 months of crystal storage - new refinement Deposited 2015-02-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 2 CL CHLORIDE ION × 5 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；295 K；HEWL co-crystallized with cisplatin with 5% DMSO media in 1 mL 10% sodium chloride + 1 ml 0.04 M sodium acetate, pH 4.7
|
Resolution 2.00 Å R-free 0.179 |
| 4YEO Triclinic HEWL co-crystallised with cisplatin, studied at a data collection temperature of 150K - new refinement Deposited 2015-02-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | CPT Cisplatin × 1 PT PLATINUM (II) ION × 4 EDO 1,2-ETHANEDIOL × 1 DMS DIMETHYL SULFOXIDE × 2 NO3 NITRATE ION × 7 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.7；294 K；40mg HEWL co-crystallised with 2.6mg cisplatin, with the platinum compounds being in a 3-fold molar excess to the protein. 462.5 ul of a 0.02M NaAc solution along with 462.5 ul of a 0.5M NaNo3 solution was used with 75 ul DMSO added
|
Resolution 0.98 Å R-free 0.131 |
| 4YM8 Crystal structure of hen egg-white lysozyme Deposited 2015-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K
|
Resolution 2.10 Å R-free 0.179 |
| 4YOP CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME Deposited 2015-03-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；sodium chloride, PEG 6000
|
Resolution 2.10 Å R-free 0.191 |
| 4Z3M X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Complex with S,O Bidentate Ligands (9b) Deposited 2015-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 4KV 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol × 1 DMS DIMETHYL SULFOXIDE × 1 NO3 NITRATE ION × 3 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；20% ethylene glycol, 0.1 M sodium acetate pH 4.5, 0.6 M sodium nitrate
|
Resolution 2.15 Å R-free 0.233 |
| 4Z41 X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Compound with a S,O Bidentate Ligand (9a=Chloro-(1-(3'-hydroxy)-3-(methylthio)-3-thioxo-prop-1-en-1-olate-O,S)-(dimethylsulfoxide-S)-platinum(II)) Deposited 2015-04-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 4KV 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol × 1 DMS DIMETHYL SULFOXIDE × 1 NO3 NITRATE ION × 6 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；20 % ethylene glycol, 0.1 M sodium acetate pH 4.5, 0.6 M sodium nitrate
|
Resolution 1.89 Å R-free 0.219 |
| 4Z46 X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin Deposited 2015-04-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 9 NA SODIUM ION × 2 1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1 CPT Cisplatin × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.6 M sodium nitrate, 0.1 M sodium acetate pH 4.4, 20 %ethylene glycol
|
Resolution 1.85 Å R-free 0.218 |
| 4Z98 Crystal Structure of Hen Egg White Lysozyme using Serial X-ray Diffraction Data Collection Deposited 2015-04-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3.5；277 K；20% w/v NaCl, 8% w/v PEG 8000, 0.5 M Sodium acetate
|
Resolution 1.55 Å R-free 0.246 |
| 4ZEE X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin (preparation 2) Deposited 2015-04-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 9 EDO 1,2-ETHANEDIOL × 2 1PT CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) × 1 CPT Cisplatin × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；Best crystals grow within 2-10 days from the following conditions: 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol.
|
Resolution 1.95 Å R-free 0.230 |
| 4ZFP A new crystal structure for the adduct formed in the reaction between AuSac2, a cytotoxic homoleptic gold(I) compound with the saccharinate ligand, and the model protein hen egg white lysozyme Deposited 2015-04-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NO3 NITRATE ION × 6 AU GOLD ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；Best crystals grow within 2 days from the following conditions: 0.6 M NaNO3, 0.1 M sodium acetate pH 4.4 and 20 % ethylene glycol.
|
Resolution 1.96 Å R-free 0.235 |
| 4ZIX Structure of HEWL using Serial Femtosecond Crystallography of Soluble Proteins in Lipidic Cubic Phase Deposited 2015-04-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；293 K；Lysozyme powder from chicken egg white was dissolved in 0.02 M Sodium acetate pH 4.6 buffer to a final concentration of 50 mg/mL. Crystallization was initiated by injecting 20 uL of lysozyme solution (50 mg/mL) into 1 mL of precipitant solution (20 %(w/v) NaCl, 6 %(v/v) PEG 6000, 1 M Na acetate pH 3.0) at room temperature.
|
Resolution 1.89 Å R-free 0.191 |
| 5A3E 2.5A structure of lysozyme determined by MicroED with data from a single crystal Deposited 2015-05-28 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
X-ray crystallization conditions
pH 4.5；pH 4.5
|
Resolution 2.50 Å R-free 0.253 |
| 5AMY Crystal Structure of Hen egg white lysozyme processed with the CrystalDirect automated mounting and cryo-cooling technology Deposited 2015-09-02 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
0.1 M SODIUM ACETATE, 1.25 M NACL, PH=4.6
|
Resolution 1.80 Å R-free 0.220 |
| 5APC Hen Egg White Lysozyme illuminated with 0.4THz radiation Deposited 2015-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；50MM NA ACETATE, PH 4.5 1M NACL 25% ETHYLENE GLYCOL 30-100MG/ML HEWL IN 50MM NA ACETATE, PH 4.5
|
Resolution 1.70 Å R-free 0.197 |
| 5APD Hen Egg White Lysozyme not illuminated with 0.4THz radiation Deposited 2015-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；50MM NA ACETATE, PH 4.5 1M NACL 25% ETHYLENE GLYCOL 30-100MG/ML HEWL IN 50MM NA ACETATE, PH 4.5
|
Resolution 1.70 Å R-free 0.196 |
| 5APE Hen Egg White Lysozyme reference dataset odd frames Deposited 2015-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；30-100MG/ML HEWL IN 50MM NAAC PH 4.5 RESERVOIR: 50MM NAAC PH 4.5 1M NACL 25% ETHYLENE GLYCOL
|
Resolution 1.70 Å R-free 0.192 |
| 5APF Hen Egg White Lysozyme reference dataset even frames Deposited 2015-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；30-100MGML HEWL IN 50MM NAAC PH4.5 RESERVOIR: 50MM NAAC PH4.5, 1M NACL, 25% ETHYLENE GLYCOL
|
Resolution 1.70 Å R-free 0.193 |
| 5B05 Lysozyme (control experiment) Deposited 2015-10-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 4 NA SODIUM ION × 8 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；NaCl, Ethylene glycol
|
Resolution 1.80 Å R-free 0.187 |
| 5B06 Lysozyme (denatured by NaOD and refolded) Deposited 2015-10-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 4 NA SODIUM ION × 8 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；NaCl, ethylene glycol
|
Resolution 1.80 Å R-free 0.187 |
| 5B07 Lysozyme (denatured by DCl and refolded) Deposited 2015-10-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 4 NA SODIUM ION × 8 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；NaCl, ethylene glycol
|
Resolution 1.80 Å R-free 0.187 |
| 5B1F Crystal structure of hen egg-white lysozyme Deposited 2015-12-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；NaCl
|
Resolution 2.30 Å R-free 0.215 |
| 5B1G Crystal structure of hen egg-white lysozyme Deposited 2015-12-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；NaCl
|
Resolution 2.30 Å R-free 0.211 |
| 5B59 Hen egg-white lysozyme modified with a keto-ABNO. Deposited 2016-04-28 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | KTO (1~{S},5~{R})-9-oxidanyl-9-azabicyclo[3.3.1]nonan-3-one × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.8M NaCl, 0.05M AcOH
|
Resolution 2.00 Å R-free 0.248 |
| 5B5J Hen egg white lysozyme with boron tracedrug UTX-97 Deposited 2016-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | UTX 2-cyano-3-((6-(((2-((2-cyanoethyl)(borocaptate-10B)sulfonio)acetyl)carbamoyl)oxy)hexyl)amino)quinoxaline 1,4-dioxide × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；283 K；0.1 M sodium acetatebuffer (pH4.7), 0.4M NaCl
|
Resolution 1.26 Å R-free 0.223 |
| 5C6I Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation Deposited 2015-06-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 CL CHLORIDE ION × 4 GD GADOLINIUM ATOM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 1.90 Å R-free 0.222 |
| 5C6J Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation Deposited 2015-06-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 CL CHLORIDE ION × 4 GD GADOLINIUM ATOM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å R-free 0.272 |
| 5C6L Crystal Structure of Gadolinium derivative of HEWL solved using intense Free-Electron Laser radiation Deposited 2015-06-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 CL CHLORIDE ION × 4 GD GADOLINIUM ATOM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 % NaCl, 6 % PEG 6000, 1 M Na acetate pH 3.0, stored in 8% NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in storage solution + 100 mM gadoteridol, batch, temperature 293K
|
Resolution 2.10 Å R-free 0.280 |
| 5D5C In meso in situ serial X-ray crystallography structure of lysozyme at 100 K Deposited 2015-08-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.70 Å R-free 0.222 |
| 5D5F In meso in situ serial X-ray crystallography structure of lysozyme by bromine-SAD at 100 K Deposited 2015-08-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.50 Å R-free 0.212 |
| 5DL9 Structure of Tetragonal Lysozyme in complex with Iodine solved by UWO Students Deposited 2015-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IOD IODIDE ION × 4 EDO 1,2-ETHANEDIOL × 9 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Protein Solution (60 mg/ml protein in 0.1M Na acetate pH 4.6) mixed in a 1:1 ratio with the Well Solution (10% NaCl buffered in 0.1 M Na acetate pH 4.5). Cryoprotected in 10% NaI, 0.1 M Na acetate pH 4.5 25% ethylene glycol
|
Resolution 1.38 Å R-free 0.184 |
| 5DLA Structure of Tetragonal Lysozyme solved by UWO Students Deposited 2015-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 CL CHLORIDE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；Protein Solution (60 mg/ml protein in 0.1M Na acetate pH 4.6) mixed in a 1:1 ratio with the Well Solution (10% NaCl buffered in 0.1 M Na acetate pH 4.5). Cryoprotected in 10% NaCl, 0.1 M Na acetate pH 4.5 25% ethylene glycol
|
Resolution 1.22 Å R-free 0.164 |
| 5DM9 XFEL structure of hen egg-white lysozyme solved using a droplet injector at SACLA Deposited 2015-09-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；290 K；PEG 6000, Sodium chloride, Sodium acetate
|
Resolution 2.30 Å R-free 0.211 |
| 5E4P X-ray Crystal Structure Analysis of Magnetically Oriented Microcrystals of Lysozyme at 1.8 angstrom Resolution Deposited 2015-10-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；313 K；PEG4000, Sodium chloride
|
Resolution 1.79 Å R-free 0.226 |
| 5E9R X-ray structure of the complex between lysozyme and the compound fac, cis-[RuII(CO)3Cl2(N3-MBI), MBI=N-methyl-benzimidazole Deposited 2015-10-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 5LN chloranyl-bis(hydroxymethyl)-bis(oxidanyl)ruthenium × 1 CMO CARBON MONOXIDE × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；Hen egg white lysozyme was incubated for 2 h in the presence of Ru-MBI in 1:10 protein to metal compound ratio. The adduct was then crystallized by using the hanging drop vapour diffusion method. Drops of 1 microliter were prepared at room temperature mixing 0.5 microliter of adduct at concentration 15 mg/mL with an equal amount of a reservoir constituted by 1.1 M NaCl, 0.1 M acetate buffer, pH 4.0. Crystals of the adduct grow within 24-48 hours.
|
Resolution 2.25 Å R-free 0.237 |
| 5EBH Crystal Structure HEW Lysozyme processed with the CrystalDirect automated mounting and cryo-cooling technology Deposited 2015-10-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；Crystallization experiments were carried out at the High Throughput Crystallization Laboratory of the EMBL Grenoble Outstation (https://embl.fr/htxlab) using the sitting-drop vapour diffusion method and CrystalDirect plates . Crystallization experiments were set up with 100 nl of sample and 100 nl of crystallization solution on the inner surface of the films within a CrystalDirect plate with a Cartesian PixSys robot (Cartesian Technologies). The crystallization solution was 0.1 M sodium acetate, pH=4.6 and 1.25 M sodium chloride.
|
Resolution 1.20 Å R-free 0.201 |
| 5F14 Structure of native hen egg-white lysozyme Deposited 2015-11-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；298 K；10% (w/v) sodium chloride, 0.1M sodium acetate
|
Resolution 1.15 Å R-free 0.182 |
| 5F16 CTA-modified hen egg-white lysozyme Deposited 2015-11-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；2M sodium chloride, 12% (w/v) PEG 6000
|
Resolution 1.20 Å R-free 0.248 |
| 5F81 Acoustic injectors for drop-on-demand serial femtosecond crystallography Deposited 2015-12-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.6；295 K；Batch crystallization 120 mg/ml dissolved in 0.1M sodium acetate (4.6), crystallized with 6% sodium chloride + 10% v/v glycerol
|
Resolution 2.13 Å R-free 0.333 |
| 5F9U X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 20 DEGREES Deposited 2015-12-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.85 Å R-free 0.233 |
| 5F9X X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 55 DEGREES Deposited 2015-12-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 CPT Cisplatin × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.94 Å R-free 0.248 |
| 5FCP X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN AT LONG INCUBATION TIMES Deposited 2015-12-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 2 CPT Cisplatin × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Crystals were grown using a reservoir solution of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4 and a drop of 1 uL adduct solution and 1 uL reservoir solution.
|
Resolution 1.55 Å R-free 0.213 |
| 5FDJ Hen egg lysozyme at room temperature solved from datasets acquired by ultrasonic acoustic levitation method and processed by CrystFEL Deposited 2015-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å R-free 0.220 |
| 5FEK Hen egg lysozyme at room temperature solved from 3600 diffraction images acquired by ultrasonic acoustic levitation method and processed by CrystFEL Deposited 2015-12-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å R-free 0.228 |
| 5FEL Hen egg lysozyme at room temperature solved from dataset acquired by oscillation method Deposited 2015-12-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；Na acetate, MPEG 5K, NaCl, Na acetate, ethylene glycerol
|
Resolution 1.80 Å R-free 0.199 |
| 5FHW Hen Egg-White Lysozyme (HEWL) complexed with Hf(IV)-substituted Wells Dawson-type polyoxometalate Deposited 2015-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | HFW Dawson-type polyoxometalate × 1 K POTASSIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；25 mg/mL Lysozyme C, 1.45 mM 1:2 Hf-Wells Dawson, 2.0 M sodium chloride, 0.1 M potassium phosphate monobasic, 0.1 M sodium phosphate monobasic monohydrate, 0.1 M MES pH = 6.5
|
Resolution 1.52 Å R-free 0.189 |
| 5FST Structure of lysozyme prepared by the 'soak-and-freeze' method under 100 bar of krypton pressure Deposited 2016-01-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP RESIDUES 19-147
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 KR KRYPTON × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.8；10% (W/V) NACL, 0.1M NA ACETATE PH 4.8 25% (V/V) ETH-GLYCOL
|
Resolution 1.20 Å R-free 0.134 |
| 5GWB Hen Egg White Lysozyme native crystals soaked for 2 hours in precipitant solution containing 1 M guanidine hydrochloride and 25% glycerol, before data collection Deposited 2016-09-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 GAI GUANIDINE × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；300 K；Sodium Chloride
|
Resolution 2.00 Å R-free 0.233 |
| 5HLL Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO. Deposited 2016-01-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 PT PLATINUM (II) ION × 2 NH3 AMMONIA × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；295 K；HEWL CO-CRYSTALLIZED WITH CISPLATIN, WITH 5% DMSO MEDIA IN 1 ML, 10% SODIUM CHLORIDE + 1 ML 0.04 M SODIUM ACETATE, PH 4.7, BATCH, TEMPERATURE 295K
|
Resolution 1.70 Å R-free 0.224 |
| 5HMJ Re-refinement of 4xan: hen lysozyme with carboplatin in sodium bromide solution Deposited 2016-01-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 14 NA SODIUM ION × 1 PT PLATINUM (II) ION × 1 ACT ACETATE ION × 1 DMS DIMETHYL SULFOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；297 K；CO-CRYSTALLIZING 20 MG ML HEWL WITH 1.4 MG CARBOPLATIN IN 75 MicroL DMSO, 462.5 MicroL 0.1 M SODIUM ACETATE, 462.5 MicroL 1 M NABR SOLUTION., PH 4.7, BATCH MODE, TEMPERATURE 297K .
|
Resolution 1.30 Å R-free 0.215 |
| 5HMV Re refinement of 4mwk. Deposited 2016-01-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 3 NO3 NITRATE ION × 7 PT PLATINUM (II) ION × 7 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；294 K；40MG HEWL CO-CRYSTALLISED WITH 2.6MG CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN. 462.5 MicroL OF A 0.02M NAAC SOLUTION ALONG
WITH 462.5 MicroL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 MicroL DMSO ADDED, BATCH, PH 4.7, EVAPORATION, TEMPERATURE 294K
|
Resolution 0.98 Å R-free 0.147 |
| 5HNC Synchrotron X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels Deposited 2016-01-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.5；313 K；PEG 4000, Sodium chloride
|
Resolution 1.76 Å R-free 0.190 |
| 5HNL In-house X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels Deposited 2016-01-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；313 K；PEG 4000, Sodium chloride
|
Resolution 2.42 Å R-free 0.188 |
| 5HQ1 Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted. Deposited 2016-01-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 3 NO3 NITRATE ION × 4 PT PLATINUM (II) ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；294 K；CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG
CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN. 462.5 UL OF A 0.02M NAAC SOLUTION ALONG
WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO ADDED, BATCH, TEMPERATURE 294K, PH 4.7, EVAPORATION.
|
Resolution 1.00 Å R-free 0.197 |
| 5I4W Exploring the onset of lysozyme denaturation by urea Deposited 2016-02-13 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；295 K；sodium chloride, sodium citrate
|
Resolution 1.60 Å R-free 0.211 |
| 5I4X Exploring onset of lysozyme denaturation by urea - soak period 2 hours Deposited 2016-02-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | URE UREA × 7 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；295 K；Sodium chloride, sodium citrate
|
Resolution 1.61 Å R-free 0.213 |
| 5I4Y Exploring onset of lysozyme denaturation by urea: soak period 10 hours. Deposited 2016-02-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | URE UREA × 21 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；295 K；sodium chloride, sodium citrate
|
Resolution 1.61 Å R-free 0.211 |
| 5I53 Exploring onset of lysozyme denaturation by urea - soak period 7 hours Deposited 2016-02-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | URE UREA × 12 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；295 K；Sodium chloride, sodium citrate
|
Resolution 1.61 Å R-free 0.187 |
| 5I54 Exploring onset of lysozyme denaturation by urea - soak period 4 hours Deposited 2016-02-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | URE UREA × 7 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；295 K；Sodium chloride, sodium citrate
|
Resolution 1.61 Å R-free 0.199 |
| 5I5Q Re refinement of 4mwn. Deposited 2016-02-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 NO3 NITRATE ION × 3 PT PLATINUM (II) ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；294 K；CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG
CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR EXCESS TO THE PROTEIN, 462.5 UL OF A 0.02M NAAC SOLUTION ALONG WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO ADDED, BATCH, PH 4.7, EVAPORATION, TEMPERATURE 294K
|
Resolution 1.42 Å R-free 0.237 |
| 5IDD Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted. Deposited 2016-02-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 NA SODIUM ION × 2 PT PLATINUM (II) ION × 3 DMS DIMETHYL SULFOXIDE × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；293 K；CRYSTALLIZATION CONDITIONS: 40MG HEWL (2.7MM) CO-CRYSTALLISED WITH
3MG CARBOPLATIN (8.1MM). 462.5 microL OF A 0.02M NAAC SOLUTION ALONG
REMARK 280 WITH 462.5 microL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 microL DMSO.
|
Resolution 1.13 Å R-free 0.220 |
| 5IEL Structure of Lysozyme labeled with fluorescein isothiocyanate (FITC) at 1.15 Angstroms resolution Deposited 2016-02-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 6B9 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；285 K；0.1M HEPES 30% v/v Jeffamine ED-2001 ; 0.2M Magnesium nitrate hexahydrate 20% w/v Polyethylene glycol 3,350
|
Resolution 1.15 Å R-free 0.176 |
| 5IHG The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme a compound I, a platin(II) compound containing a O, S bidentate ligand Deposited 2016-02-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 PT PLATINUM (II) ION × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；1.1 M NaCl, 0.1 M sodium acetate pH 4.4. S protein concentration :about 15 mg/ml.
|
Resolution 1.75 Å R-free 0.203 |
| 5II3 The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and compound 3, a platin(II) compound containing a O, S bidentate ligand Deposited 2016-03-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 6B6 platinum(4+) tetrahydroxide × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；Crystals of hen egg white lysozyme-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg /ml.
|
Resolution 1.78 Å R-free 0.190 |
| 5ILC The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme a compound 2, a platin(II) compound containing a O, S bidentate ligand Deposited 2016-03-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 1 DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 5 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；Crystals of hen egg white lysozyme (HEWL)-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor-diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg x ml.
|
Resolution 1.75 Å R-free 0.211 |
| 5ILF The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and compound 4, a platin(II) compound containing a O, S bidentate ligand Deposited 2016-03-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 PT PLATINUM (II) ION × 1 CL CHLORIDE ION × 4 ACT ACETATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；Crystals of hen egg white lysozyme (HEWL)-Pt compound adducts appeared in solutions consisting of 1.1 M NaCl, 0.1 M sodium acetate pH 4.4. Single crystals suitable for X-ray experiments were grown by the hanging drop vapor-diffusion method using a 1:1 ratio of reservoir solution and protein adducts solution with a protein concentration of about 15 mg / ml.
|
Resolution 1.85 Å R-free 0.233 |
| 5J7C A picomolar affinity FN3 domain in complex with hen egg-white lysozyme Deposited 2016-04-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；10% PEG 6000, 0.1 M Bicine, pH 8.8
|
Resolution 2.54 Å R-free 0.250 |
| 5J7C A picomolar affinity FN3 domain in complex with hen egg-white lysozyme Deposited 2016-04-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；10% PEG 6000, 0.1 M Bicine, pH 8.8
|
Resolution 2.54 Å R-free 0.250 |
| 5JEN Crystal structure of the anti-sigma factor RsiV bound to lysozyme Deposited 2016-04-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 3 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；291 K；0.2 M sodium nitrate, 20% (w/v) PEG 3350.
|
Resolution 2.30 Å R-free 0.237 |
| 5JEN Crystal structure of the anti-sigma factor RsiV bound to lysozyme Deposited 2016-04-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 3 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；291 K；0.2 M sodium nitrate, 20% (w/v) PEG 3350.
|
Resolution 2.30 Å R-free 0.237 |
| 5K2K Crystal structure of lysozyme Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.1M Tris:HCl pH8.5, 1.4M Ammonium Tartrate Dibasic
|
Resolution 1.65 Å R-free 0.236 |
| 5K2N lysozyme with nano particles Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.1M Tris-HCl pH8.5, 1.4M Ammonium Tartrate Dibasic
|
Resolution 1.40 Å R-free 0.179 |
| 5K2P Crystal structure of lysozyme Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.1M Tris-HCl pH8.5, 1.3M Ammonium Tartrate Dibasic
|
Resolution 1.24 Å R-free 0.173 |
| 5K2Q Lysozyme with nano particles Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.1M Tris-HCl pH8.5, 1.3M Ammonium Tartrate Dibasic
|
Resolution 1.10 Å R-free 0.180 |
| 5K2R Crystal structure of lysozyme Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.1M Tris-HCl pH 8.5, 1.5M Ammonium Sulfate
|
Resolution 1.60 Å R-free 0.217 |
| 5K2S Lysozyme with nano particles Deposited 2016-05-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.2M Sodium Chloride, 0.1M Sodium Citrate-Citric Acid pH5.5, 1.0M Ammonium Phosphate Dibasic
|
Resolution 1.55 Å R-free 0.185 |
| 5K7O MicroED structure of lysozyme at 1.8 A resolution Deposited 2016-05-26 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.80 Å R-free 0.284 |
| 5KJ9 Anticancer activity of Ru- and Os(arene) compounds of a maleimide-functionalized bioactive pyridinecarbothioamide ligand Deposited 2016-06-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.20 Å R-free 0.196 |
| 5KKI 1.7-Angstrom in situ Mylar structure of hen egg-white lysozyme (HEWL) at 100 K Deposited 2016-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 ACY ACETIC ACID × 1 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；100 mM NaOAc, 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 1.70 Å R-free 0.210 |
| 5KKI 1.7-Angstrom in situ Mylar structure of hen egg-white lysozyme (HEWL) at 100 K Deposited 2016-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 10 ACY ACETIC ACID × 2 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；100 mM NaOAc, 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 1.70 Å R-free 0.210 |
| 5KKJ 2.0-Angstrom In situ Mylar structure of hen egg-white lysozyme (HEWL) at 293 K Deposited 2016-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 ACY ACETIC ACID × 1 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；100 mM NaOAc 1 M NaCl, 30% (v/v) PEG 400
|
Resolution 2.00 Å R-free 0.200 |
| 5KXK Hen Egg White Lysozyme at 100K, Data set 1 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 NA SODIUM ION × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.180 |
| 5KXL Hen Egg White Lysozyme at 100K, Data set 2 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.164 |
| 5KXM Hen Egg White Lysozyme at 100K, Data set 3 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.180 |
| 5KXN Hen Egg White Lysozyme at 100K, Data set 4 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.178 |
| 5KXO Hen Egg White Lysozyme at 278K, Data set 1 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.193 |
| 5KXP Hen Egg White Lysozyme at 278K, Data set 2 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.197 |
| 5KXR Hen Egg White Lysozyme at 278K, Data set 3 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.187 |
| 5KXS Hen Egg White Lysozyme at 278K, Data set 4 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.193 |
| 5KXT Hen Egg White Lysozyme at 278K, Data set 5 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.206 |
| 5KXW Hen Egg White Lysozyme at 278K, Data set 6 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.204 |
| 5KXX Hen Egg White Lysozyme at 278K, Data set 7 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.207 |
| 5KXY Hen Egg White Lysozyme at 278K, Data set 8 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.210 |
| 5KXZ Hen Egg White Lysozyme at 278K, Data set 9 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.211 |
| 5KY1 Hen Egg White Lysozyme at 278K, Data set 10 Deposited 2016-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；291 K；CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
|
Resolution 1.20 Å R-free 0.218 |
| 5L3H Re-refinement of 4dd4; cisplatin coordination chemistry determination at hen egg white lysozyme His15 with standard uncertainties Deposited 2016-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 PT PLATINUM (II) ION × 5 NH3 AMMONIA × 3 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；295 K；CRYSTALLIZATION CONDITIONS: HEWL CO-CRYSTALLIZED WITH CISPLATIN IN
462.5 microL 0.05 M SODIUM ACETATE AND 462.5 microL 10% SODIUM CHLORIDE
IN 75 microL DMSO MEDIA, PH 4.7, BATCH, TEMPERATURE 295K.
|
Resolution 1.70 Å R-free 0.248 |
| 5L3I Re-refinement of 4dd6; cisplatin coordination chemistry determination at hen egg white lysozyme His15 Deposited 2016-05-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 3 NA SODIUM ION × 1 PT PLATINUM (II) ION × 5 CL CHLORIDE ION × 6 NH3 AMMONIA × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；295 K；HEWL CO-CRYSTALLIZED WITH CISPLATIN IN 462.5 microL 0.05 M SODIUM ACETATE AND 462.5 microL 10% SODIUM CHLORIDE IN 75 microL DMSO, PH 4.7, BATCH, TEMPERATURE 295K.
|
Resolution 1.70 Å R-free 0.212 |
| 5L9J Room temperature X-ray diffraction of tetragonal HEWL. First data set (0.31 MGy) Deposited 2016-06-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；Protein: 40-80 mg/ml of protein in 200mM NaAcetate pH 4.7
Crystallization condition: 200mM NaAcetate pH 4.7, 10% NaCl
|
Resolution 1.50 Å R-free 0.162 |
| 5LA5 Room temperature X-ray diffraction of tetragonal HEWL. Second data set (0.62 MGy) Deposited 2016-06-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 1.70 Å R-free 0.185 |
| 5LA8 Room temperature X-ray diffraction of tetragonal HEWL. Third data set (0.93 MGy) Deposited 2016-06-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 2.00 Å R-free 0.200 |
| 5LAF Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. First data set (0.31 MGy) Deposited 2016-06-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
|
Resolution 1.50 Å R-free 0.176 |
| 5LAG Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. Second data set (0.62 MGy) Deposited 2016-06-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；Protein: 50 mg/ml of HEWL in mQ
Crystallization solution: 200 mM NaAcetate + 10% NaCl
|
Resolution 1.60 Å R-free 0.173 |
| 5LAN Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. Third data set (0.93 MGy) Deposited 2016-06-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；291 K；protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH4.7 + 10% NaCl
|
Resolution 1.65 Å R-free 0.173 |
| 5LIN Lysozyme, collected at rotation 1 degree per second Deposited 2016-07-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；30% w/v Polyethylene glycol monomethyl ether 5,000,
1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
|
Resolution 1.50 Å R-free 0.233 |
| 5LIO Lysozyme, collected at rotation 360 degree per second Deposited 2016-07-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；30% w/v Polyethylene glycol monomethyl ether 5,000,
1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
|
Resolution 1.50 Å R-free 0.249 |
| 5LVG Hen Egg White Lysozyme co-crystallized with cis-Ru(DMSO)4Cl2 Deposited 2016-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RU RUTHENIUM ION × 1 CL CHLORIDE ION × 4 ACT ACETATE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；1M NaCl, 50 mM sodium acetate
|
Resolution 2.00 Å R-free 0.233 |
| 5LVH Hen Egg White Lysozyme co-crystallized with trans-Ru(DMSO)4Cl2 Deposited 2016-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RU RUTHENIUM ION × 1 CL CHLORIDE ION × 8 NA SODIUM ION × 1 ACT ACETATE ION × 2 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.55 Å R-free 0.210 |
| 5LVI Hen Egg White Lysozyme co-crystallized with [HIsq][trans-RuCl4(DMSO)(Isq)] Deposited 2016-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 ACT ACETATE ION × 3 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.70 Å R-free 0.217 |
| 5LVJ Hen Egg White Lysozyme co-crystallized with [H2Ind][trans-RuCl4(DMSO)(HInd)] Deposited 2016-09-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 ACT ACETATE ION × 4 GOL GLYCEROL × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.8 M NaCl, 50 mM sodium acetate
|
Resolution 1.60 Å R-free 0.214 |
| 5LXW Atomic resolution X-ray crystal structure of cisplatin bound to hen egg white lysozyme stored for 5 years on the shelf Deposited 2016-09-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 5 NA SODIUM ION × 1 PT PLATINUM (II) ION × 3 NH3 AMMONIA × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；295 K；Hen Egg White Lysozyme (49mg, ie 3.2mM), cisplatin (3mg, ie 10mM), 462.5 microlitres of 0.04 M sodium acetate, 462.5 microlitres of 10% sodium chloride, and with 7.5% DMSO (75 microlitres ie 1mM), pH 4.7, batch crystallisation method and room temperature (295K). The crystallisation pot was kept for five years.
|
Resolution 1.00 Å R-free 0.203 |
| 5LYM STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMENT AT 1.8 ANGSTROM RESOLUTION AND A COMPARISON OF THE VARIABLE REGIONS IN THE POLYMORPHIC FORMS Deposited 1995-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å R-free 0.264 |
| 5LYM STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMENT AT 1.8 ANGSTROM RESOLUTION AND A COMPARISON OF THE VARIABLE REGIONS IN THE POLYMORPHIC FORMS Deposited 1995-07-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å R-free 0.264 |
| 5LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 5LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 5M1Y The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this Deposited 2016-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 2 IOD IODIDE ION × 16 DMS DIMETHYL SULFOXIDE × 3 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；293 K；CRYSTALLIZATION CONDITIONS: 20MG HEWL CO-CRYSTALLISED WITH 1.2MG
CISPLATIN WITH 75UL DMSO, 462.5UL 0.1M NAAC AND 462.5UL 1M NAI SOLUTION
|
Resolution 1.90 Å R-free 0.262 |
| 5M1Y The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this Deposited 2016-10-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 1 IOD IODIDE ION × 10 DMS DIMETHYL SULFOXIDE × 3 CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.7；293 K；CRYSTALLIZATION CONDITIONS: 20MG HEWL CO-CRYSTALLISED WITH 1.2MG
CISPLATIN WITH 75UL DMSO, 462.5UL 0.1M NAAC AND 462.5UL 1M NAI SOLUTION
|
Resolution 1.90 Å R-free 0.262 |
| 5MJJ Single-shot pink beam serial crystallography: Lysozyme Deposited 2016-12-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；277 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.75 Å R-free 0.188 |
| 5MYY Hen Egg-White Lysozyme (HEWL) cocrystallized in the presence of Cadmium sulphate Deposited 2017-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CD CADMIUM ION × 10 CL CHLORIDE ION × 10 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；0.1 M Sodium acetate pH 4.8 10-12% NaCl
20-25% Ethylene Glycol
60 mg/ ml HEWL in 0.1 M Sodium acetate pH 4.8
|
Resolution 1.10 Å R-free 0.143 |
| 5NBJ DLS Tetragonal - ReHEWL Deposited 2017-03-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RE RHENIUM × 10 CL CHLORIDE ION × 9 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；10% NaCl, NaOAc 0.04 M
|
Resolution 1.27 Å R-free 0.197 |
| 5NE0 Room temperature in-situ structure of hen egg-white lysozyme from crystals enclosed between ultrathin silicon nitride membranes Deposited 2017-03-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；90 ul (50mg/ml H2O) lysozyme solution + 20 ul of the precipitant solution (0.1M NaAc 0.6M NaCl) and 10ul 25% ethylene glycol (in water) were mixed together. 20 microliters from this mixture deposited onto the silicon nitride chip.
|
Resolution 1.57 Å R-free 0.184 |
| 5NJ1 The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and arsenoplatin-1 Deposited 2017-03-27 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 5 A6R arsenoplatin-1 × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；20% ethylene glycol, 0.1 M sodium acetate at pH 4.5, 0.6 M sodium nitrate. Crystals of the adduct with AP1 were obtained upon two days soaking of pregrown HEWL crystals in a solution containing 5 mM AP1 dissolved in DMSO and added to the crystal mother liquor.
|
Resolution 1.85 Å R-free 0.242 |
| 5NJM Lysozyme room-temperature structure determined by serial millisecond crystallography Deposited 2017-03-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；19.04% NaCl, 5.44% PEG 8,000, 68mM Na Acetate pH 3.0
|
Resolution 1.50 Å R-free 0.200 |
| 5NJP Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 1HEW Deposited 2017-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；274 K；Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å R-free 0.201 |
| 5NJQ Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 1s time-delay, phased with 4ET8 Deposited 2017-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；274 K；Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å R-free 0.200 |
| 5NJR Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 4ET8 Deposited 2017-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；274 K；Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å R-free 0.198 |
| 5NJS Mix-and-diffuse serial synchrotron crystallography: structure of N,N',N''-Triacetylchitotriose bound to Lysozyme with 50s time-delay, phased with 1HEW Deposited 2017-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；274 K；Crystals with sizes between 6 and 8 um in diameter were obtained by adding three parts of precipitant (1M NaCl, 40% ethylene glycol (v/v), 15% PEG4000 (w/v), 50 mM acetate buffer at pH 3.5, filtered through 450 nm filter) to one part of lysozyme (Sigma-Aldrich, 126 mg/ml dissolved in50 mM acetate buffer, pH 3.5, filtered through 100 nm filter) at 274K (ThermoStat C, Eppendorf, Germany). The resulting mixture was immediately subjected to rapid mixing and incubated for 30 minutes at 274K.
|
Resolution 1.70 Å R-free 0.199 |
| 5O4W Protein structure determination by electron diffraction using a single three-dimensional nanocrystal Deposited 2017-05-31 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å R-free 0.350 |
| 5O4W Protein structure determination by electron diffraction using a single three-dimensional nanocrystal Deposited 2017-05-31 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å R-free 0.350 |
| 5O4X Protein structure determination by electron diffraction using a single three-dimensional nanocrystal Deposited 2017-05-31 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å R-free 0.279 |
| 5O4X Protein structure determination by electron diffraction using a single three-dimensional nanocrystal Deposited 2017-05-31 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.11 Å R-free 0.279 |
| 5O6Q High pressure flash cooled hen egg white lysozyme Deposited 2017-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；291 K；lysozyme was dissolved in 0.02 M sodium acetate pH 4.6 to yield 20 mg/ml and mixed 1:1 with 0.8 M sodium chloride and 0.1 M sodium acetate pH 4.6
|
Resolution 1.45 Å R-free 0.197 |
| 5OB6 X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole Deposited 2017-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 1 RU2 pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium × 3 RU1 bis(oxidaniumylidynemethyl)ruthenium(2+) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；1.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4. Adduct was prepared by mixing the protein with the metallodrug in a 1:10 molar ratio for 24 h at room temperature before crystallization trials.
|
Resolution 1.88 Å R-free 0.242 |
| 5OB7 X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole (crystal 2) Deposited 2017-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 9QB chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium × 1 9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 1 RU RUTHENIUM ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；1.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4
|
Resolution 2.10 Å R-free 0.234 |
| 5OB8 X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using NaCl) Deposited 2017-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 2 9QB chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium × 1 RU2 pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；1.1M NaCl, 0.1 M sodium acetate pH 4.0
|
Resolution 1.85 Å R-free 0.230 |
| 5OB9 X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using ethylene glycol Deposited 2017-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NO3 NITRATE ION × 5 9Q8 tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；20% Ethylene gly-col, 0.1 M sodium acetate pH 4.0, 0.6 M sodium nitrate
|
Resolution 2.38 Å R-free 0.308 |
| 5OCV A Rare Lysozyme Crystal Form Solved Using High-Redundancy 3D Electron Diffraction Data from Micron-Sized Needle Shaped Crystals Deposited 2017-07-03 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.4
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
pH 3.4
|
Resolution 2.20 Å R-free 0.270 |
| 5OCV A Rare Lysozyme Crystal Form Solved Using High-Redundancy 3D Electron Diffraction Data from Micron-Sized Needle Shaped Crystals Deposited 2017-07-03 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 3.4
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
pH 3.4
|
Resolution 2.20 Å R-free 0.270 |
| 5OER Hen egg-white lysozyme refined against 5000 9 keV diffraction patterns Deposited 2017-07-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 GD GADOLINIUM ATOM × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；Sodium chloride
|
Resolution 1.90 Å R-free 0.214 |
| 5OLE X-ray structure of the adduct formed upon reaction of hen egg white lysozyme with a tetranuclear Pt-thiosemicarbazone compound Deposited 2017-07-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 6 DMS DIMETHYL SULFOXIDE × 3 PT PLATINUM (II) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.78 Å R-free 0.238 |
| 5OOV Designed Ankyrin Repeat Protein (DARPin) ETVD-1 in complex with Lysozyme Deposited 2017-08-08 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
Fragment：Lysozyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；298 K；0.2M Na-Tartrate, 14.7% PEG3350
|
Resolution 1.36 Å R-free 0.179 |
| 5OOY Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme Deposited 2017-08-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
Fragment：Lysozyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；298 K；10% PEG3000, 0.1M Imidazole pH=8.0, 0.2M LiSO4
|
Resolution 1.72 Å R-free 0.224 |
| 5OOY Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme Deposited 2017-08-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
19–147（129 aa）
Fragment：Lysozyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；298 K；10% PEG3000, 0.1M Imidazole pH=8.0, 0.2M LiSO4
|
Resolution 1.72 Å R-free 0.224 |
| 5OP1 Designed Ankyrin Repeat Protein (DARPin) A4 in complex with Lysozyme Deposited 2017-08-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
Fragment：Lysozyme
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；298 K；0.2 M (NH4)2 Tart, 20 %w/v PEG 3350
|
Resolution 2.28 Å R-free 0.249 |
| 5T3F hen egg-white lysozyme soaked with selenourea for 10 min Deposited 2016-08-25 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | SEY selenourea × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；293 K；25% (w/v) PEG3350 and 50mM citrate buffer pH 4.0.
|
Resolution 1.45 Å R-free 0.184 |
| 5TK0 Lysozyme structure collected with 3D printed polymer mounts Deposited 2016-10-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；5% NaCl 0.1M sodium acetate at pH 4.5
|
Resolution 1.79 Å R-free 0.291 |
| 5UVJ Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation Deposited 2017-02-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；298 K；18 % (w/v) NaCl, 6 % (v/v) PEG 6000, 1 M sodium acetate pH 3.0
|
Resolution 2.05 Å R-free 0.268 |
| 5V4G Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct with two binding sites Deposited 2017-03-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.20 Å R-free 0.206 |
| 5V4H Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct formed when ruthenium(II)(cymene)(bromido)2 underwent ligand exchange, resulting in one binding site Deposited 2017-03-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 RU7 PARA-CYMENE RUTHENIUM CHLORIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.22 Å R-free 0.190 |
| 5V4I Osmium(II)(cymene)(chlorido)2-lysozyme adduct with one binding site Deposited 2017-03-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 8WV dichloro[(1,2,3,4,5,6-eta)-3-methyl-6-(propan-2-yl)benzene-1,2,4,5-tetrayl]osmium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；100mg/mL hen egg white lysozyme, 0.8 M NaCl, 0.1 M sodium acetate pH 4.7
|
Resolution 1.50 Å R-free 0.278 |
| 5WR9 Crystal structure of hen egg-white lysozyme Deposited 2016-12-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；285 K；sodium chloride, PEG 6000, pH 3.0
|
Resolution 1.80 Å R-free 0.184 |
| 5WRA Crystal structure of hen egg-white lysozyme Deposited 2016-12-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；299 K；sodium chloride, PEG 6000, pH 3.0
|
Resolution 1.45 Å R-free 0.196 |
| 5WRB Crystal structure of hen egg-white lysozyme Deposited 2016-12-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；290 K；sodium chloride, PEG 6000, pH 3.0
|
Resolution 2.01 Å R-free 0.202 |
| 5YIN Hen egg-white lysozyme precipitant-free orthorhombic form Deposited 2017-10-06 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-148
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；298 K；No precipitants, extensive concentration
|
Resolution 1.66 Å R-free 0.213 |
| 5YKY Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked with 10 mM Rose Bengal and 10mM H2PtCl6 Deposited 2017-10-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 24 PT PLATINUM (II) ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.7M NaCl, 0.1 M acetate buffer
|
Resolution 1.88 Å R-free 0.237 |
| 6A10 Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate Deposited 2018-06-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å R-free 0.176 |
| 6A10 Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate Deposited 2018-06-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å R-free 0.176 |
| 6A10 Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate Deposited 2018-06-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；1.2M ammonium sulfate, 6%(v/v) 1,4-dioxane
|
Resolution 1.13 Å R-free 0.176 |
| 6A4N HEWL crystals soaked in 2.5M GuHCl for 8 minutes Deposited 2018-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 GAI GUANIDINE × 5 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.6；300 K；The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride.
|
Resolution 1.75 Å R-free 0.207 |
| 6A4O HEWL crystals soaked in 2.5M GuHCl for 20 minutes Deposited 2018-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GAI GUANIDINE × 6 CL CHLORIDE ION × 3 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride.
|
Resolution 1.75 Å R-free 0.204 |
| 6A4P HEWL crystals soaked in 2.5M GuHCl for 40 minutes Deposited 2018-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GAI GUANIDINE × 10 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1 M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride
|
Resolution 1.76 Å R-free 0.198 |
| 6A4Q HEWL crystals soaked in 2.5M GuHCl for 110 minutes Deposited 2018-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 GAI GUANIDINE × 12 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；The concentration of the protein was 20mg/ml. The precipitant solution in the reservoir was 0.1M sodium acetate/acetic acid buffer of pH 4.6 to 5.0 containing 1.2 to 1.5M sodium chloride. The soaking solution was 0.1M sodium acetate/acetic acid buffer at pH 3.5 containing 1.4M NaCl, 25% v/v glycerol (as cryo-protectant) and 2.5M of guanidine hydrochloride.
|
Resolution 1.75 Å R-free 0.215 |
| 6ABN Crystal Structure of HEWL at pH 8.6 Deposited 2018-07-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.17 Å R-free 0.196 |
| 6ABZ Crystal Structure of HEWL in deionized water Deposited 2018-07-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PGO S-1,2-PROPANEDIOL × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.70 Å R-free 0.234 |
| 6AC2 Crystal Structure of HEWL at pH 2.2 Deposited 2018-07-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PGO S-1,2-PROPANEDIOL × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M Sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.23 Å R-free 0.184 |
| 6AD5 Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 24 hours under fibrillation conditions Deposited 2018-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 2 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.75 Å R-free 0.180 |
| 6ADF Structure of HEWL co-crystallised with TEMED Deposited 2018-07-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 1 PGO S-1,2-PROPANEDIOL × 3 CL CHLORIDE ION × 3 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6 and 2 M NaCl
|
Resolution 1.08 Å R-free 0.176 |
| 6AEA Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 5 hours under fibrillation conditions Deposited 2018-08-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 9U3 N,N,N',N'-tetramethylethane-1,2-diamine × 4 PGO S-1,2-PROPANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；292 K；10% PEG 6000 and 2M NaCl
|
Resolution 1.40 Å R-free 0.198 |
| 6AGN Structure of HEWL co-crystallised with Cinnamaldehyde Deposited 2018-08-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 1 9Y3 (2Z)-3-phenylprop-2-enal × 1 9Y6 (2E)-3-phenylprop-2-enal × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；292 K；1.5 M NaCl and 10% Ethanol
|
Resolution 1.08 Å R-free 0.194 |
| 6AGR Structure of HEWL co-crystallised with phenylethyl alcohol Deposited 2018-08-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 3 PEL 2-PHENYL-ETHANOL × 1 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6, 2M NaCl
|
Resolution 1.22 Å R-free 0.182 |
| 6AHH Crystal Structure of HEWL in complex with Phenylethyl alcohol (in the aroma form) after 5 hours under fibrillation conditions Deposited 2018-08-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PGO S-1,2-PROPANEDIOL × 1 CL CHLORIDE ION × 3 PEL 2-PHENYL-ETHANOL × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；292 K；2 M NaCl, 10% PEG 6000
|
Resolution 2.10 Å R-free 0.246 |
| 6AHL Crystal Structure of HEWL in complex with Cinnamaldehyde (in the aroma form) after 5 hours under fibrillation conditions Deposited 2018-08-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PGO S-1,2-PROPANEDIOL × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 CIN 4-CARBOXYCINNAMIC ACID × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；292 K；0.1 M sodium acetate pH 4.6, 1.2 M NaCl
|
Resolution 1.80 Å R-free 0.207 |
| 6APM Hen egg-white lysozyme (WT), solved with serial millisecond crystallography using synchrotron radiation Deposited 2017-08-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；298 K；2.5 M NaCl, 6% PEG 6K, 0.15 M sodium acetate (pH 4.5)
|
Resolution 2.05 Å R-free 0.233 |
| 6B7U Structure of hen egg-white lysozyme without high-pressure pre-treatment Deposited 2017-10-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 GOL GLYCEROL × 2 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.7M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.58 Å R-free 0.210 |
| 6B7V Structure of hen egg-white lysozyme pre-treated with high-pressure homogenization at 120 MPa Deposited 2017-10-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 GOL GLYCEROL × 2 ACT ACETATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.7M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.48 Å R-free 0.203 |
| 6B7W Structure of hen egg-white lysozyme pre-treated with high pressure (600 MPa) under isobaric condition Deposited 2017-10-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 GOL GLYCEROL × 2 ACT ACETATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.9M sodium chloride, 0.1M sodium acetate pH 4.8
|
Resolution 1.48 Å R-free 0.187 |
| 6BO1 Mono-adduct formed after 3 days in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL Deposited 2017-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 E3D dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Ru(II)(cymene)(1,3-dimethylbenzimidazol-2-ylidene)(chlorido)2 (1.04 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.24 Å R-free 0.239 |
| 6BO2 Adducts formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL Deposited 2017-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 RU RUTHENIUM ION × 1 E3D dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Ru(II)(cymene)(1,3-dimethylbenzimidazol-2-ylidene)(chlorido)2 (1.04 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.48 Å R-free 0.233 |
| 6BRE Hen Egg-White Lysozyme cocrystallized with Cadmium sulphate using CuKalpha source. Deposited 2017-11-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CD CADMIUM ION × 10 CL CHLORIDE ION × 6 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；1.5 M Sodium Chloride, Sodium acetate
|
Resolution 1.86 Å R-free 0.248 |
| 6CIW Hen Egg White Lysozyme Cocrystallized with 1,3-Di(2-pyridyl)propane Deposited 2018-02-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | F44 2,2'-(propane-1,3-diyl)dipyridine × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.1 M sodium acetate pH 5.0
1M NaCl
|
Resolution 1.42 Å R-free 0.276 |
| 6D6E Triclinic lysozyme (295 K) in the presence of 47% xylose Deposited 2018-04-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；Protein: 10 mg/mL
Well: 0.3 M NaNO3
|
Resolution 2.00 Å R-free 0.187 |
| 6D6F Triclinic lysozyme cryocooled to 100 K with 47% xylose as cryoprotectant Deposited 2018-04-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 XYS alpha-D-xylopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；Protein: 10 mg/mL
Well: 0.3 M NaNO3
|
Resolution 2.00 Å R-free 0.200 |
| 6D6G Triclinic lysozyme (295 K) in the presence of 47% MPD Deposited 2018-04-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；Protein: 10 mg/mL in water
Well: 0.3 M NaNO3
|
Resolution 2.00 Å R-free 0.182 |
| 6D6H Triclinic lysozyme cryocooled to 100 K with 47% MPD as cryoprotectant Deposited 2018-04-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；Protein: 10 mg/mL in water
Well: 0.3 M NaNO3
|
Resolution 2.00 Å R-free 0.193 |
| 6F1L Lysozyme crystallized in presence of 100 mM sodium phosphate at pH 4.5 Deposited 2017-11-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–145（127 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.5 M Sodium Chloride, 0.1 M Sodium Phosphate. 0.1 M Sodium Acetate
|
Resolution 1.30 Å R-free 0.180 |
| 6F1M Lysozyme crystallized in presence of 100 mM sodium phosphate at pH 4.5: low-humidity form Deposited 2017-11-22 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.5 M Sodium Chloride, 0.1 M Sodium Phosphate. 0.1 M Sodium Acetate
|
Resolution 1.48 Å R-free 0.258 |
| 6F1O Orthorhombic Lysozyme crystallized at 298 K and pH 4.5 Deposited 2017-11-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.2 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 0.96 Å R-free 0.142 |
| 6F1P Tetragonal Lysozyme crystallized at 298 K and pH 4.5 with phosphate bound Deposited 2017-11-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PO4 PHOSPHATE ION × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.2 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.12 Å R-free 0.168 |
| 6F1R Tetragonal Lysozyme crystallized at 298 K and pH 4.5 with phosphate bound: control experiment Deposited 2017-11-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.5 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.10 Å R-free 0.164 |
| 6F2I Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 Deposited 2017-11-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 7MT Tb-Xo4 × 2 CL CHLORIDE ION × 4 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM Sodium acetate pH 4.6, 0.2 to 0.8 M Chlorure de Sodium.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.20 Å R-free 0.193 |
| 6F2J Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM sodium sulfate Deposited 2017-11-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 7MT Tb-Xo4 × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM Sodium acetate pH 4.6, 200mM to 800 mM sodium chloride and 100 mM sodium sulfate.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.30 Å R-free 0.179 |
| 6F2K Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium phosphate monobasic. Deposited 2017-11-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM sodium acetate pH 4.6, 200 to 800 sodium chloride, 100 mM Potassium phosphate monobasic.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.50 Å R-free 0.240 |
| 6F9X Lysozyme crystallized in presence of 100 mM lithium sulphate at pH 4.5 Deposited 2017-12-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–145（127 aa）
|
Not recorded | SO4 SULFATE ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；100 mM Lithium Sulphate, 0.3 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.25 Å R-free 0.194 |
| 6F9Y Lysozyme crystallized in presence of 10 mM lithium sulphate at pH 4.5 Deposited 2017-12-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–145（127 aa）
|
Not recorded | SO4 SULFATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；10 mM Lithium Sulphate, 0.3 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.20 Å R-free 0.201 |
| 6F9Z Lysozyme crystallized in presence of 5 mM ammonium sulphate at pH 4.5 Deposited 2017-12-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–145（127 aa）
|
Not recorded | CL CHLORIDE ION × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 mM Ammonium Sulphate, 0.4 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.20 Å R-free 0.178 |
| 6FA0 Lysozyme crystallized in presence of 100 mM ammonium sulphate at pH 4.5 Deposited 2017-12-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–145（127 aa）
|
Not recorded | CL CHLORIDE ION × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；100 mM Ammonium Sulphate, 0.4 M Sodium Chloride, 0.1 M Sodium Acetate
|
Resolution 1.30 Å R-free 0.188 |
| 6FRO Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide. Deposited 2018-02-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 IOD IODIDE ION × 5 NA SODIUM ION × 1 7MT Tb-Xo4 × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Sodium acetate pH 4.6 100 mM, Sodium Chloride 800 mM, potassium iodide 100 mM.
Tb-Xo4 was directly mixed with the protein solution at a final concentration of 100 mM prior to crystallization.
|
Resolution 1.42 Å R-free 0.276 |
| 6FRQ Structure of tetragonal Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM Potassium sodium tartrate tetrahydrate. Deposited 2018-02-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TB TERBIUM(III) ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM sodium acetate pH 4.6, 800 mM sodium chloride, 100 mM sodium and potassium tartrate, 100 mM Tb-Xo4
|
Resolution 1.69 Å R-free 0.239 |
| 6FSJ Crystal structure of TCE-treated Lysozyme Deposited 2018-02-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 CIT CITRIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；30 mg/ml Lysozyme in 20 mM Tris pH 7.5, 200 mM NaCl 1:1 with 1.0 M LiCl, 0.1 M Na citrate pH 4.0 20 % w/v PEG 6000
Cryoprotectant: Etylene glycol
30 mM TCE
|
Resolution 1.20 Å R-free 0.170 |
| 6FTR Serial Femtosecond Crystallography at Megahertz pulse rates Deposited 2018-02-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 2 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；293 K；NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
|
Resolution 1.76 Å R-free 0.173 |
| 6G5C Interaction of TiO2 nanoparticles (NM-101) with Lysozyme Deposited 2018-03-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NA SODIUM ION × 5 4TI TITANIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；296 K；20 mg/ml Lys in
TiO2 2.56 mg/ml (JRC NM-101 )
Well/solution
10% (w/v) sodium chloride
0.1 M Sodium acetate buffer pH 5.0
25% (v/v) ethylene glycol
drop 4 microliter Lys + 2 microliter TiO2
|
Resolution 1.80 Å R-free 0.204 |
| 6G5V The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (pH 7.0) Deposited 2018-03-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 6 DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid/NaOH, 0.10 M HEPES pH 7.0, 1% MPEG 2K
|
Resolution 1.96 Å R-free 0.250 |
| 6G5Y The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (acid pH) Deposited 2018-03-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 PT PLATINUM (II) ION × 8 DMS DIMETHYL SULFOXIDE × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；283 K；20% ethylene glicol, 0.10 M sodium acetate pH 4.4, 0.60 M sodium nitrate
|
Resolution 1.49 Å R-free 0.240 |
| 6G8A Lysozyme solved by Native SAD from a dataset collected in 5 seconds at 1 A wavelength with JUNGFRAU detector Deposited 2018-04-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 17 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；5% PEG MME 5000, 2 M NaCl, 50 mM Sodium Acetate pH 4.5, 25%
480 ethylene glycol
|
Resolution 1.14 Å R-free 0.130 |
| 6GF0 Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip Deposited 2018-04-27 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 % NaCl, 6 % PEG 6000, 0.1 M sodium acetate pH 3.0
|
Resolution 2.07 Å R-free 0.235 |
| 6GNL Zr(IV)-substituted Keggin directly binding to the side chain of Hen Egg-White Lysozyme (HEWL) Deposited 2018-05-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ZKG ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN × 2 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 7；289 K；1.75 mM HEWL, 0.88 mM 2:2 Zr(IV)-Keggin, 1.5 M NH4Cl, 0.1 M Bis-Tris propane pH = 7.0
|
Resolution 1.23 Å R-free 0.171 |
| 6GOB X-ray structure of the adduct formed upon reaction of lysozyme with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain Deposited 2018-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PD PALLADIUM ION × 2 NO3 NITRATE ION × 2 F6Q N,N-pyridylbenzimidazole derivative-Pd complex × 5 SO4 SULFATE ION × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 1.96 Å R-free 0.231 |
| 6GOH X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain Deposited 2018-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 2 PT PLATINUM (II) ION × 2 CL CHLORIDE ION × 1 F7T alkylated sulphonate-N,N-pyridylbenzimidazole-Pt complex × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 2.43 Å R-free 0.273 |
| 6GOI X-ray structure of the adduct formed upon reaction of lysozyme with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated triphenylphosphonium cation Deposited 2018-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 PD PALLADIUM ION × 2 CL CHLORIDE ION × 2 DMS DIMETHYL SULFOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；20% ethylene glycol
0.6 M sodium nitrate
0.1 M sodium acetate pH 4.4
|
Resolution 1.99 Å R-free 0.242 |
| 6GOJ X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated triphenylphosphonium cation Deposited 2018-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 2 NO3 NITRATE ION × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；293 K；20% ethylene glycol
0.6 M sodium nitrate
0.1 M sodium acetate pH 4.4
|
Resolution 2.25 Å R-free 0.279 |
| 6H0K Hen egg-white lysozyme structure determined with data from the EuXFEL, the first MHz free electron laser, 7.47 keV photon energy Deposited 2018-07-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20% NaCl, 6% PEG 6000
|
Resolution 2.20 Å R-free 0.240 |
| 6H0L Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy Deposited 2018-07-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；20% NaCl, 6% PEG 6000
|
Resolution 1.90 Å R-free 0.237 |
| 6H3B Lysozyme: Machining protein microcrystals for structure determination by electron diffraction Deposited 2018-07-18 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 | ELECTRON CRYSTALLOGRAPHY mmCIF provides none of the parsed conditions | Resolution 1.90 Å R-free 0.283 |
| 6H79 SSX structure of Lysozyme in flow - metal-kapton microfluidic device Deposited 2018-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；275 K；3:1 v/v precipitant solution:protein solution
precipitant: 50 mM NaAc pH 3.5, 1M NaCl, 35% ethylene glycol, 20% PEG3350
protein buffer: 50 mM NaAc (pH 3.5)
|
Resolution 2.10 Å R-free 0.216 |
| 6HT2 STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION Deposited 2018-10-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 11 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；1.5 M SODIUM CHLORIDE
|
Resolution 2.60 Å R-free 0.252 |
| 6HT2 STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION Deposited 2018-10-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；1.5 M SODIUM CHLORIDE
|
Resolution 2.60 Å R-free 0.252 |
| 6HU5 STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION Deposited 2018-10-05 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
1.5 M SODIUM CHLORIDE
|
Resolution 2.80 Å R-free 0.339 |
| 6HU5 STRUCTURE OF HEWL BY ELECTRON DIFFRACTION AND MICROFOCUS DIFFRACTION Deposited 2018-10-05 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
1.5 M SODIUM CHLORIDE
|
Resolution 2.80 Å R-free 0.339 |
| 6HY4 Co(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Deposited 2018-10-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | CWO Co(II)-substituted Wells-Dawson × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4；289 K；1.40 mM HEWL, 1.0 mM 1:1 Co(II)-Wells-Dawson, 0.50 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.83 Å R-free 0.214 |
| 6HY6 Ni(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Deposited 2018-10-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–146（128 aa）
|
Not recorded | GXZ Ni(II)-substituted Wells-Dawson × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4；289 K；1.40 mM HEWL, 1.0 mM 1:1 Ni(II)-Wells-Dawson, 0.75 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.87 Å R-free 0.192 |
| 6HY8 Cu(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Deposited 2018-10-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GXW Cu(II)-substituted Wells-Dawson × 1 K POTASSIUM ION × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4；289 K；1.75 mM HEWL, 0.8 mM 1:1 Cu(II)-Wells-Dawson, 2.60 M NaCl, 0.1 M Bis-Tris pH = 5.5
|
Resolution 1.22 Å R-free 0.155 |
| 6HYB Zr(IV)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Deposited 2018-10-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–146（128 aa）
|
Not recorded | ZRW W-Zr-cluster × 1 K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4；289 K；1.75 mM HEWL, 0.8 mM 1:1 Zr(IV)-Wells-Dawson, 1 M LiCl, 30% PEG 6000, 0.1 M Citric acid pH = 4.0
|
Resolution 1.96 Å R-free 0.204 |
| 6IG6 Crystal structure of lysozyme delivered in polyacrylamide using x-ray free electron laser Deposited 2018-09-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.70 Å R-free 0.217 |
| 6IRJ Crystal structure of lysozyme by fixed-target serial femtosecond crystallography Deposited 2018-11-13 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：UNP residues 19-147
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.65 Å R-free 0.229 |
| 6JB2 Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme Deposited 2019-01-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 2 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293.15 K；20mM TRIS HCl, 100mM NaCl, 100mM Sodium nitrate, 16% (w/v) PEG 3350
|
Resolution 1.50 Å R-free 0.165 |
| 6JB5 Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II) Deposited 2019-01-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293.15 K；20mM Tris-HCl pH 8.0, 100mM NaCl, 100mM LiCl, 18 % PEG 3350
|
Resolution 1.55 Å R-free 0.169 |
| 6JB8 Crystal structure of nanobody D3-L11 in complex with hen egg-white lysozyme Deposited 2019-01-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 1 NA SODIUM ION × 3 GOL GLYCEROL × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293.15 K；20mM Tris-HCl, 100mM NaCl, 100mM NaNO3, 16% PEG 3350
|
Resolution 1.65 Å R-free 0.207 |
| 6JXP Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography Deposited 2019-04-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.56 Å R-free 0.200 |
| 6JXQ Room temperature structure of lysozyme delivered in polyacrylamide by serial millisecond crystallography Deposited 2019-04-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.76 Å R-free 0.202 |
| 6JZI Structure of hen egg-white lysozyme obtained from SFX experiments under atmospheric pressure Deposited 2019-05-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；28% NaCl, 8% PEG6000, 0.1 M Na-acetate pH 3.0
|
Resolution 2.00 Å R-free 0.202 |
| 6K5Q Crystal structure of lysozyme complexed with a bioactive compound from Jatropha gossypiifolia Deposited 2019-05-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 GOL GLYCEROL × 1 NA SODIUM ION × 1 D2L [(3R,6R)-6-methyloctan-3-yl] 2-[(2S,4S,6R)-2-[(2S)-2-ethylpentyl]-6-methyl-1-(2-oxidanylideneethyl)piperidin-4-yl]ethanesulfonate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；100mM Sodium Acetate pH 4.5, 20% (v/v) Ethylene Glycol
|
Resolution 1.18 Å R-free 0.194 |
| 6K8G H/D exchanged Hen egg-white lysozyme Deposited 2019-06-11 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；NaCl, sodium acetate-d3, acetic acid-d4, 100% D2O
|
Resolution not provided |
| 6KCB Room temperature structure of lysozyme delivered in shortening A by serial millisecond crystallography Deposited 2019-06-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.80 Å R-free 0.205 |
| 6KCD Room temperature structure of lysozyme delivered in shortening B by serial millisecond crystallography Deposited 2019-06-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.50 Å R-free 0.207 |
| 6KD1 Room temperature structure of lysozyme delivered in agarose by serial millisecond crystallography Deposited 2019-06-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å R-free 0.224 |
| 6LAV MicroED structure of lysozyme at 1.73A determained using crystal lamellas prepared by focused ion beam milling Deposited 2019-11-13 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 2 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.73 Å R-free 0.258 |
| 6LL3 Crystal structure of lysozyme by fixed-target serial femtosecond crystallography Deposited 2019-12-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å R-free 0.246 |
| 6LT5 Lysozyme protected by alginate gel Deposited 2020-01-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；277 K；50mM sodium acetate, 1.5M NaCl, pH 4.5
|
Resolution 1.32 Å R-free 0.180 |
| 6LYT COMPARISON OF RADIATION-INDUCED DECAY AND STRUCTURE REFINEMENT FROM X-RAY DATA COLLECTED FROM LYSOZYME CRYSTALS AT LOW AND AMBIENT TEMPERATURES Deposited 1992-03-20 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 6LYZ Real-space refinement of the structure of hen egg-white lysozyme Deposited 1975-02-01 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 6MQV Structure of HEWL from LCP injector using synchrotron radiation Deposited 2018-10-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.8；293 K；1.5M lithium chloride, 0.2M sodium acetate, 40% polyethelyene glycol 6,000
|
Resolution 2.00 Å R-free 0.249 |
| 6MUZ Lysozyme, room temperature structure solved by serial 3 degree oscillation crystallography Deposited 2018-10-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；277 K；50 mg/ml Lysozyme solution (in deionized H2O) was used for crystallization. A mixture of 1 mL of Lysozyme sample and 3 mL of precipitant (20% w/v NaCl, 6% PEG 6K, 0.5 M NaOAc pH 4.0)
|
Resolution 1.84 Å R-free 0.204 |
| 6MX9 Lysozyme bound to 3-Aminophenol Deposited 2018-10-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NA SODIUM ION × 2 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 1 K5V 3-aminophenol × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；10uL of 50mM 3-aminophenol was deposited on a cover slip and allowed to dry. A 20 uL pellet of 4% sodium chloride + 5% ethylene glycol + 10% glycerol in 2% agar was deposited on the cover slip. Adjacent to this was positioned lysozyme (10 ul of 30 mg/ml lysozyme in 100 mM sodium acetate pH 4.6). The cover slip was equilibrated over precipitant containing all the crystallization components.
|
Resolution 1.35 Å R-free 0.186 |
| 6O2H Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset Deposited 2019-02-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；295 K；8 microliter drops with 5-15 mg/mL protein, 224-300 mM NaNO3, 50 mM NaOAc pH 4.5, under paraffin oil
|
Resolution 1.21 Å R-free 0.117 |
| 6P4A HyHEL10 Fab complexed with hen egg lysozyme carrying two mutations (HEL2x-rigid): R21Q and R73E Deposited 2019-05-27 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：R21Q, R73E | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM Bis-Tris propane, pH 7.0, 22% PEG3350
|
Resolution 2.20 Å R-free 0.292 |
| 6P4B HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S) Deposited 2019-05-27 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Mutation：R21Q, R73E, C76S, C94S | CL CHLORIDE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM citrate, pH 4.2, 1 M lithium chloride, 11% w/v PEG3350
|
Resolution 1.90 Å R-free 0.244 |
| 6P4B HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S) Deposited 2019-05-27 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain D
19–147（129 aa）
|
Mutation：R21Q, R73E, C76S, C94S | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM citrate, pH 4.2, 1 M lithium chloride, 11% w/v PEG3350
|
Resolution 1.90 Å R-free 0.244 |
| 6P4D Hen egg lysozyme (HEL) containing three point mutations (HEL3x): R21Q, R73E, and D101R Deposited 2019-05-27 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：R21Q, R73E, D101R | CL CHLORIDE ION × 4 NA SODIUM ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；293 K；12 mg/mL protein, 25 mM Tris, pH 8.0, 150 mM sodium chloride, spontaneous crystal growth
|
Resolution 1.05 Å R-free 0.145 |
| 6Q88 RT structure of HEWL at 5 kGy Deposited 2018-12-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4；293 K；20 % NaCl
6 % PEG 6000
150 mM ammonium acetate pH 4.0
|
Resolution 1.74 Å R-free 0.199 |
| 6Q8R HEW Lysozyme under 2 kbar of argon Deposited 2018-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 12 NA SODIUM ION × 1 AR ARGON × 8 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；298 K；10 % (W/V) NACL, 0.1 M ACETATE BUFFER PH 4.8. + 25 % (V/V) ETH-GLYCOL
|
Resolution 1.70 Å R-free 0.188 |
| 6Q8T Cryo structure of HEWL at 81 kGy Deposited 2018-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 PEG DI(HYDROXYETHYL)ETHER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4；293 K；20 % NaCl
6 % PEG 6000
150 mM ammonium acetate pH 4.0
|
Resolution 1.74 Å R-free 0.242 |
| 6QEA The X-ray structure of the adduct formed in the reaction between hen egg white lysozyme and complex I, a pentacoordinate Pt(II) compound containing 2,9-dimethyl-1,10-phenanthroline, dimethylfumarate, methyl and iodine as ligands Deposited 2019-01-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 5 J9H pentacoordinate Pt(II) compound × 1 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.4；298 K；20% glycol ethylene
0.1 M sodium acetate pH 4.4
0.6 M sodium nitrate
|
Resolution 1.96 Å R-free 0.205 |
| 6QNB Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3 Deposited 2019-02-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.70 Å R-free 0.211 |
| 6QQ3 The room temperature structure of lysozyme via the acoustic levitation of a droplet Deposited 2019-02-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 5 ACT ACETATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.8；291 K；10 % w/v NaCl, 25 % w/v ethylene glycol, 100 mM Na Acetate pH 4.8
|
Resolution 1.53 Å R-free 0.201 |
| 6QQC Cryogenic temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 110 kGy Deposited 2019-02-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.8；293 K；6-9% NaCl et 0.1M Na Acetate pH 4.8.
|
Resolution 1.42 Å R-free 0.204 |
| 6QQD Cryogenic temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 10 MGy Deposited 2019-02-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.8；293 K；6-9% NaCl, 0.1M Na Acetate pH 4.8
|
Resolution 1.92 Å R-free 0.216 |
| 6QQE Room temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 20 kGy Deposited 2019-02-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.8；293 K；6-9% NaCl, 0.1M Na Acetate pH 4.8
|
Resolution 1.37 Å R-free 0.188 |
| 6QQF Room temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 100 kGy Deposited 2019-02-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.8；293 K；6-9% NaCl, 0.1M Na Acetate pH4.8
|
Resolution 1.95 Å R-free 0.230 |
| 6QWW HEWL lysozyme, crystallized from CuCl2 solution Deposited 2019-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CU COPPER (II) ION × 4 CL CHLORIDE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；CuCl2
|
Resolution 1.35 Å R-free 0.190 |
| 6QWX HEWL lysozyme, crystallized from NiCl2 solution Deposited 2019-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NI NICKEL (II) ION × 2 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；NiCl2
|
Resolution 1.35 Å R-free 0.193 |
| 6QWY HEWL lysozyme, crystallized from NaCl solution Deposited 2019-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 3 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；NaCl
|
Resolution 1.35 Å R-free 0.199 |
| 6QWZ HEWL lysozyme, crystallized from KCl solution Deposited 2019-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；KCl
|
Resolution 1.35 Å R-free 0.216 |
| 6QX0 HEWL lysozyme, crystallized from LiCl solution Deposited 2019-03-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；LiCl
|
Resolution 1.35 Å R-free 0.210 |
| 6QXW Pink beam serial crystallography: Lysozyme, 5 us exposure, 24344 patterns merged (3 chips) Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.174 |
| 6QXX Pink beam serial crystallography: Lysozyme, 5 us exposure, 14793 patterns merged Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.180 |
| 6QXY Pink beam serial crystallography: Lysozyme, 5 us exposure, 8813 patterns merged (1 chip) Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.186 |
| 6QY0 Pink beam serial crystallography: Lysozyme, 5 us exposure, 3000 patterns merged Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.195 |
| 6QY1 Pink beam serial crystallography: Lysozyme, 5 us exposure, 1500 patterns merged Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.206 |
| 6QY2 Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 patterns merged Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.70 Å R-free 0.242 |
| 6QY4 Pink beam serial crystallography: Lysozyme, 1 us exposure, 14793 patterns merged Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.84 Å R-free 0.183 |
| 6QY5 Pink beam serial crystallography: Lysozyme, 1 us exposure, 4448 patterns merged (1 chip) Deposited 2019-03-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；277 K；50mM sodium acetate 3.5, 0.75M sodium chloride, 30% ethylene glycol, 11.25% polyethylene glycol 400
|
Resolution 1.84 Å R-free 0.202 |
| 6RNB Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3 50ms diffusion time Deposited 2019-05-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.70 Å R-free 0.186 |
| 6RNC Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Lysozyme with GlcNAc3 - 100ms diffusion time. Deposited 2019-05-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；20 mM NaAcetate pH 4.7, 50 mM NaCl
|
Resolution 1.80 Å R-free 0.192 |
| 6RO3 2Yr-X: Lysozyme with Re Cluster 2 year on shelf Deposited 2019-05-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 2 RE RHENIUM × 2 KBW Re4(mu3-OH)4(CO)12 × 3 RRE fac-tricarbonyl-triaqua rhenium(I) × 2 BR BROMIDE ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.03 Å R-free 0.118 |
| 6RO5 1Yr-Y: Lysozyme with Re Cluster 1 year on shelf Deposited 2019-05-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RE RHENIUM × 7 CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 QEB [Re4(mu3-OH)4(CO)12] × 6 RRE fac-tricarbonyl-triaqua rhenium(I) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.68 Å R-free 0.273 |
| 6RO5 1Yr-Y: Lysozyme with Re Cluster 1 year on shelf Deposited 2019-05-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | RE RHENIUM × 6 CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 RRE fac-tricarbonyl-triaqua rhenium(I) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.7；298 K；Standard hen egg white lysozyme (20 mg) crystallisation conditions were used of 10% NaCl, NaOAc 0.04 M (pH 4.7) and the fac-[Et4N]2[Re(CO)3(Br)3] at 0.03 M in 1.4 ml water, in sitting drop conditions, initially included with DMSO (at 7.5 % v/v).
|
Resolution 1.68 Å R-free 0.273 |
| 6RT1 Native tetragonal lysozyme - home source data Deposited 2019-05-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 CL CHLORIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；293 K；100 mM Sodium Acetate pH 4.8, 10% (w/v) NaCl, 25% (v/v) Ethylene Glycol
|
Resolution 1.34 Å R-free 0.162 |
| 6RT3 Native tetragonal lysozyme - synchrotron data Deposited 2019-05-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 7 CL CHLORIDE ION × 8 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.1M Sodium Acetate pH 4.8, 10% (w/v) NaCl, 25% (v/v) Ethylene Glycol
|
Resolution 1.05 Å R-free 0.147 |
| 6RT9 Orthorhombic lysozyme grown with 300g/L sucrose Deposited 2019-05-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；310 K；0.2M Sodium Acetate pH 4.7, 3% (w/v) NaCl, 300 g/L sucrose
|
Resolution 1.55 Å R-free 0.228 |
| 6RTA Tetragonal lysozyme grown with 300g/L Ficoll Deposited 2019-05-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；310 K；0.2M Sodium Acetate pH 4.7, 3% (w/v) NaCl, 300 g/L Ficoll
|
Resolution 1.80 Å R-free 0.191 |
| 6RXI In-flow serial synchrotron crystallography using a 3D-printed microfluidic device (3D-MiXD): Lysozyme Deposited 2019-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；30 mg/mL lysozyme in 100 mM NaAc (pH3.0) rapidly mixed in a 1:1 ratio with precipitant (100 mM NaAc pH 3.0, 20% NaCl, 6% PEG 6000)
|
Resolution 2.00 Å R-free 0.201 |
| 6S2N Hen egg-white lysozyme by serial electron diffraction Deposited 2019-06-21 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.80 Å R-free 0.316 |
| 6S7N Crystal structure of orthorhombic lysozyme grown at pH 5.5 with a 26% of solvent content Deposited 2019-07-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.2 M sodium chloride, 5mM lithium sulphate, 0.1M sodium acetate
|
Resolution 1.20 Å R-free 0.174 |
| 6SET X-ray structure of the gold/lysozyme adduct formed upon 3 days exposure of protein crystals to compound 1 Deposited 2019-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 EDO 1,2-ETHANEDIOL × 1 DMS DIMETHYL SULFOXIDE × 1 CL CHLORIDE ION × 1 AU GOLD ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.90 Å R-free 0.215 |
| 6SEU X-ray structure of the gold/lysozyme adduct formed upon 21h exposure of protein crystals to compound 2 Deposited 2019-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NO3 NITRATE ION × 5 AU GOLD ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.95 Å R-free 0.260 |
| 6SEW X-ray structure of the gold/lysozyme adduct formed upon 24h exposure of protein crystals to compound 2 Deposited 2019-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 7 AU GOLD ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 2.12 Å R-free 0.294 |
| 6SEX X-ray structure of the gold/lysozyme adduct formed upon 21h exposure of protein crystals to compound 1 Deposited 2019-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 1 DMS DIMETHYL SULFOXIDE × 1 EDO 1,2-ETHANEDIOL × 1 AU GOLD ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 1.78 Å R-free 0.224 |
| 6SEZ X-ray structure of the gold/lysozyme adduct formed upon 24h exposure of protein crystals to compound 1 Deposited 2019-07-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 2 NO3 NITRATE ION × 3 AU GOLD ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.5
0.6 M sodium nitrate
|
Resolution 2.22 Å R-free 0.249 |
| 6SIJ SAD structure of Hen Egg White Lysozyme recovered by continuous rotation data collection and multivariate analysis of Friedel pairs Deposited 2019-08-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50mM Na acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å R-free 0.167 |
| 6SIK SAD structure of Hen Egg White Lysozyme recovered by continuous rotation data collection and univariate analysis Deposited 2019-08-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50mM Na acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å R-free 0.163 |
| 6SIL SAD structure of Hen Egg White Lysozyme recovered by inverse beam geometry data collection and multivariate analysis of Friedel pairs Deposited 2019-08-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50mM Na Acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å R-free 0.169 |
| 6SIM SAD structure of Hen Egg White Lysozyme recovered by inverse beam geometry data collection and univariate analysis Deposited 2019-08-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50mM Na Acetate pH 4.5 1M NaCl 25% Ethylene glycol
|
Resolution 1.61 Å R-free 0.174 |
| 6SR0 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: single colour reference data Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.239 |
| 6SR1 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 35 fs time delay Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.245 |
| 6SR2 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 37 fs time delay Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.294 |
| 6SR3 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 62 fs time delay Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.286 |
| 6SR4 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 112 fs time delay Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.278 |
| 6SR5 X-ray pump X-ray probe on lysozyme.Gd nanocrystals: 102 fs time delay Deposited 2019-09-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；277 K；20 % NACL, 6 % PEG 6000, 0.1 M SODIUM acetate pH 3.0
|
Resolution 2.30 Å R-free 0.241 |
| 6SYC Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5 Deposited 2019-09-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 LYE bromophenol blue × 2 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；0.3 M sodium chloride, 0.1 M imidazole. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M imidazole buffer at pH 6.5.
|
Resolution 1.38 Å R-free 0.226 |
| 6SYC Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5 Deposited 2019-09-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 LYE bromophenol blue × 6 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；0.3 M sodium chloride, 0.1 M imidazole. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M imidazole buffer at pH 6.5.
|
Resolution 1.38 Å R-free 0.226 |
| 6SYD Crystal structure of the lysozyme in presence of bromophenol blue at pH 5.5 Deposited 2019-09-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 LYE bromophenol blue × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.1 M sodium acetate, 0.3-0.5 sodium chloride at pH 4.6. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 0.1 M sodium acetate buffer at pH 5.5.
|
Resolution 1.10 Å R-free 0.232 |
| 6SYE Crystal structure of orthorhombic lysozyme in presence of the dye bromophenol blue at pH 7.0 Deposited 2019-09-27 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 LYE bromophenol blue × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；Crystals grew in 0.1 M sodium acetate, 0.3 M sodium chloride at pH 4.6 in the presence of 0.1 M Lithium sulfate. After growth, and before measurement, these crystals were soaked in the dye solution: saturated bromophenol blue, 0.3 M sodium chloride, 100 mM Lithium sulfate, 100 mM phosphate buffer at pH 7.0
|
Resolution 0.97 Å R-free 0.198 |
| 6TVL Hen Egg White Lysozyme in complex with a "half sandwich"-type Ru(II) coordination compound Deposited 2020-01-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 NYN chlorido(1,2-diaminoethane-k2N,N')(1,4,7-trithiacyclononane-k3S,S',S'')ruthenium(II) trifluoromethanesulfonate × 1 TFS trifluoromethanesulfonic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；289 K；NaCl 0.7-1.5 M, 0.1 M Na acetate
|
Resolution 1.40 Å R-free 0.243 |
| 6TVY Structure of hen egg white lysozyme crystallized in the presence of Tb-Xo4 crystallophore in the XtalController device Deposited 2020-01-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 7MT Tb-Xo4 × 1 TB TERBIUM(III) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；Lysozyme stock solution at 50 mg/ml in 10 mM Sodium Acetate pH 4.5, 40 mM NaCl, incubated in the XtalController instrument. The crystallization was triggered by the addition of 10mM Tb-Xo4 crystallophore.
|
Resolution 1.51 Å R-free 0.175 |
| 6YBF RT structure of HEW Lysozyme obtained at 1.13 A resolution from crystal grown in a Kapton microchip. Deposited 2020-03-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；293.5 K；5% w/v NaCl, 50 mM AcNa pH 4.5
|
Resolution 1.13 Å R-free 0.160 |
| 6YBI RT structure of HEW Lysozyme obtained at 1.12 A resolution from crystal grown in a Mylar microchip. Deposited 2020-03-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；293.5 K；5% w/v NaCl, 50 mM AcNa pH 4.5
|
Resolution 1.12 Å R-free 0.152 |
| 6YJX Structure of Hen egg-white lysozyme crystallized with PAS polypeptide Deposited 2020-04-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；12.5 % (w/v) PA200
0.1 M NaOAc
0.2 M NaCl
|
Resolution 1.20 Å R-free 0.175 |
| 6YOB Structure of Lysozyme from COC IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging Deposited 2020-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 PG0 2-(2-METHOXYETHOXY)ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.85 Å R-free 0.239 |
| 6YOC Structure of Lysozyme from COC IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging Deposited 2020-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.86 Å R-free 0.242 |
| 6YOD Structure of Lysozyme from SiN IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging Deposited 2020-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 PG0 2-(2-METHOXYETHOXY)ETHANOL × 1 AE3 2-(2-ETHOXYETHOXY)ETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.60 Å R-free 0.211 |
| 6YOE Structure of Lysozyme from SiN IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging Deposited 2020-04-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | AE3 2-(2-ETHOXYETHOXY)ETHANOL × 1 BR BROMIDE ION × 7 NA SODIUM ION × 1 ACY ACETIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400
|
Resolution 1.85 Å R-free 0.285 |
| 6ZS8 X-ray structure of the adduct formed upon treating lysozyme with an aged solution of arsenoplatin-1 Deposited 2020-07-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 EDO 1,2-ETHANEDIOL × 1 A6R arsenoplatin-1 × 7 DMS DIMETHYL SULFOXIDE × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；298 K；20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium nitrate
|
Resolution 2.15 Å R-free 0.239 |
| 7A70 HEW lysozyme in complex with Ti(OH)4 Deposited 2020-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 R3H tetrakis(oxidanyl)titanium × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；277 K；0.5 M Tris-HCl, 0.7 M NaCl
|
Resolution 1.80 Å R-free 0.239 |
| 7AC2 Structure of Hen Egg White Lysozyme collected by rotation serial crystallography on a COC membrane at a synchrotron source Deposited 2020-09-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；dissolved 50 mg/ml in 100 mM Na Acetate pH 3.0. mixed 1:1 (v:v) with 19.04% NaCl, 5.44% PEG 8000, 68 mM Na acetate pH 3.0
|
Resolution 1.51 Å R-free 0.209 |
| 7AVE Perdeuterated refolded hen egg-white lysozyme at 100 K Deposited 2020-11-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
18–147（130 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；291 K；0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 0.98 Å R-free 0.115 |
| 7AVF Triclinic hydrogenated hen egg-white lysozyme at 100 K (control) Deposited 2020-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.5；291 K；sodium nitrate, sodium acetate pH 4.5
|
Resolution 1.00 Å R-free 0.132 |
| 7AVG Perdeuterated hen egg-white lysozyme at 100 K Deposited 2020-11-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.5；291 K；sodium nitrate, sodium acetate pD 4.5
|
Resolution 1.00 Å R-free 0.134 |
| 7B9J Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Urea 1:2 Deposited 2020-12-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CHT CHOLINE ION × 2 CL CHLORIDE ION × 13 NA SODIUM ION × 5 URE UREA × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；sodium chloride, sodium acetate, DES: Choline chloride/Urea
|
Resolution 2.20 Å R-free 0.225 |
| 7BAZ Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Glycerol 1:2 Deposited 2020-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CHT CHOLINE ION × 2 CL CHLORIDE ION × 13 NA SODIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；sodium chloride, sodium acetate,
DES: Choline chloride/Glycerol
|
Resolution 1.30 Å R-free 0.164 |
| 7BB1 Lysozyme crystallized in the presence of the hydrated deep eutectic solvent Choline chloride-Glutamic acid 2:1 Deposited 2020-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CHT CHOLINE ION × 2 CL CHLORIDE ION × 13 NA SODIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；sodium chloride, sodium acetate,
DES: Choline chloride/Glutamic acid
|
Resolution 1.30 Å R-free 0.141 |
| 7BCU The adduct of NAMI-A with Hen Egg White Lysozyme at 1.5 hours. Deposited 2020-12-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IMD IMIDAZOLE × 3 DMS DIMETHYL SULFOXIDE × 3 CL CHLORIDE ION × 21 RU RUTHENIUM ION × 3 NA SODIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；289 K；NACL 0.7-1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K
|
Resolution 0.98 Å R-free 0.144 |
| 7BCX The adduct of NAMI-A with Hen Egg White Lysozyme at 8 hours. Deposited 2020-12-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 10 IMD IMIDAZOLE × 3 DMS DIMETHYL SULFOXIDE × 3 RU RUTHENIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；289 K；NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.06 Å R-free 0.184 |
| 7BD0 The adduct of NAMI-A with Hen Egg White Lysozyme at 26 hours. Deposited 2020-12-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NA SODIUM ION × 3 IMD IMIDAZOLE × 3 RU RUTHENIUM ION × 3 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；289 K；NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.06 Å R-free 0.185 |
| 7BDM The adduct of NAMI-A with Hen Egg White Lysozyme at 98 hours. Deposited 2020-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 6 RU RUTHENIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；289 K；NACL 1.5 M, 0.1 M NA ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.07 Å R-free 0.201 |
| 7BDZ X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (1) Deposited 2020-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 9 ACT ACETATE ION × 7 EDO 1,2-ETHANEDIOL × 2 RH Rhodium × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.1M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.94 Å R-free 0.217 |
| 7BE0 X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (2) Deposited 2020-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 ACT ACETATE ION × 7 EDO 1,2-ETHANEDIOL × 2 RH Rhodium × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.62 Å R-free 0.203 |
| 7BE1 X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (3) Deposited 2020-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 NO3 NITRATE ION × 11 RH Rhodium × 2 EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.40 Å R-free 0.209 |
| 7BE2 X-ray structure of Hen Egg White Lysozyme with dirhodium tetraacetate (6) Deposited 2020-12-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 1 GOL GLYCEROL × 1 RH Rhodium × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；0.01 M HEPES, 2.00 M sodium formate
|
Resolution 1.65 Å R-free 0.234 |
| 7BEB Unusual structural features in the adduct of dirhodium tetraacetate with lysozyme (4) Deposited 2020-12-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 NO3 NITRATE ION × 12 RH Rhodium × 2 EDO 1,2-ETHANEDIOL × 3 ACT ACETATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.1 M sodium acetate, 20% ethylene glicol, 0.6 M sodium nitrate
|
Resolution 1.32 Å R-free 0.223 |
| 7BEC Unusual structural features in the adduct of dirhodium tetraacetate with lysozyme (5) Deposited 2020-12-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 NO3 NITRATE ION × 5 ACT ACETATE ION × 2 RH Rhodium × 3 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.1 M sodium acetate, 20% ethylene glicol, 0.1 M sodium nitrate
|
Resolution 1.74 Å R-free 0.228 |
| 7BHK Crystal structure of hen egg white lysozyme using drop-on-drop SFX method. Deposited 2021-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0.
|
Resolution 1.45 Å R-free 0.214 |
| 7BHL Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 0.2 s mixing with N-acetyl-D-glucosamine. Deposited 2021-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å R-free 0.211 |
| 7BHM Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 0.7 s mixing with N-acetyl-D-glucosamine. Deposited 2021-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å R-free 0.220 |
| 7BHN Crystal structure of hen egg white lysozyme using drop-on-drop SFX method - 2 s mixing with N-acetyl-D-glucosamine. Deposited 2021-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；1 M citric acid, 20% (w/v) NaCl, 5% (w/v) PEG 6000, pH 3.0
|
Resolution 1.45 Å R-free 0.194 |
| 7BMO HEWL in cesium chloride (0.25 M CsCl in protein buffer) Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.90 Å R-free 0.254 |
| 7BMP HEWL in cesium chloride (0.25 M CsCl in protein buffer and cryo protectant). Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 EDO 1,2-ETHANEDIOL × 2 CS CESIUM ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.90 Å R-free 0.195 |
| 7BMQ HEWL in cesium chloride (1.71 M CsCl in cryo protectant) Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 1 CS CESIUM ION × 15 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.79 Å R-free 0.257 |
| 7BMR HEWL in cesium chloride (0.25 M CsCl in protein buffer and 1.71 M CsCl in cryo protectant) Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 2 CS CESIUM ION × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.71 M sodium chloride
|
Resolution 1.78 Å R-free 0.212 |
| 7BMS HEWL in cesium chloride (1.5 M CsCl in crystallization condition and cryo protectant) Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 CS CESIUM ION × 16 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.5 M cesium chloride
|
Resolution 1.75 Å R-free 0.209 |
| 7BMT HEWL in sodium chloride Deposited 2021-01-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 14 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293.15 K；50 mM sodium acetate pH 4.5, 1.71 M sodium chloride, 15 % (w/v) ethylene glycol
|
Resolution 1.47 Å R-free 0.169 |
| 7BR5 Lysozyme-sugar complex in H2O Deposited 2020-03-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；293 K；40mg/mL lysozyme containing 2.1mg/mL (GlcNAc)4, 0.7M NaCl in a buffer of 50mM sodium-acetate (pH4.5)
|
Resolution 1.00 Å R-free 0.167 |
| 7BVM Crystal structure of lysozyme delivered in wheat starch Deposited 2020-04-11 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 2.00 Å R-free 0.233 |
| 7BVO Crystal structure of lysozyme delivered in alginate Deposited 2020-04-11 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å R-free 0.238 |
| 7BYO Lysozyme structure SS1 from SS mode Deposited 2020-04-24 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；291 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.60 Å R-free 0.194 |
| 7BYP Lysozyme structure SASE1 from SASE mode Deposited 2020-04-24 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；291 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.60 Å R-free 0.202 |
| 7C09 Structure of lysozyme obtained in SSRF using serial crystallography Deposited 2020-04-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；NaCl
|
Resolution 2.20 Å R-free 0.228 |
| 7CDK Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (4500 images from 1st half of data set) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å R-free 0.227 |
| 7CDM Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (4500 images from 2nd half of data set) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å R-free 0.215 |
| 7CDN Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (9000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.70 Å R-free 0.211 |
| 7CDO Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 21 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.227 |
| 7CDP Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 42 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.216 |
| 7CDQ Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 83 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.226 |
| 7CDR Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 210 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.224 |
| 7CDS Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 420 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.225 |
| 7CDT Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 830 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.219 |
| 7CDU Lysozyme room-temperature structure determined by SS-ROX combined with HAG method, 1700 kGy (3000 images) Deposited 2020-06-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | MLI MALONATE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；The lysozyme solution (40 mg/ml) in 10 mM Na-acetate, pH 4.6 was mixed with the same volume of 4 M Na-Malonate pH 3.1, 6% w/v PEG6000 and stirred for 20 minutes. The crystal growth was stopped by adding 2.4 M Na-Malonate pH 3.1, 3.6 % w/v PEG6000.
|
Resolution 1.80 Å R-free 0.242 |
| 7CJZ Room temperature structure of lysozyme delivered in lard by serial millisecond crystallography Deposited 2020-07-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.75 Å R-free 0.186 |
| 7CQO Lysozyme grown in LCP soaked with selenourea for 6 min Deposited 2020-08-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | SEY selenourea × 6 NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；297 K；35% (v/v) PEG 400, 0.8 M NaCl, 100 mM sodium citrate/citric acid pH 4.5
|
Resolution 1.71 Å R-free 0.199 |
| 7CVJ Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (100 ms) Deposited 2020-08-26 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.50 Å R-free 0.185 |
| 7CVL Crystal structure of lysozyme by fixed-target serial synchrotron crystallography (500 ms) Deposited 2020-08-26 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å R-free 0.215 |
| 7D01 Lysozyme structure SS2 from SS mode Deposited 2020-09-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.65 Å R-free 0.203 |
| 7D02 Lysozyme structure SASE2 from SASE mode Deposited 2020-09-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.65 Å R-free 0.205 |
| 7D04 Lysozyme structure SS3 from SS mode Deposited 2020-09-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.70 Å R-free 0.248 |
| 7D05 Lysozyme structure SASE3 from SASE mode Deposited 2020-09-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；100 mM sodium acetate (pH 4.0), 6% (w/v) polyethylene glycol 8,000, and 3.5 M NaCl
|
Resolution 1.70 Å R-free 0.215 |
| 7DEQ Lysozyme-sugar complex in D2O Deposited 2020-11-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；40mg/mL lysozyme containing 2.1mg/mL (GlcNAc)4, 0.7M NaCl in a buffer of 50mM sodium-acetate (pD4.5)
|
Resolution 1.03 Å R-free 0.148 |
| 7DER Lysozyme alone in H2O Deposited 2020-11-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；15mg/mL lysozyme, 0.7M NaCl in a buffer of 50mM sodium-acetate (pH4.5)
|
Resolution 1.03 Å R-free 0.173 |
| 7DLN Structure of lysozyme obtained on SSRF using serial synchrotron crystallography Deposited 2020-11-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；sodium chloride, PEG20000
|
Resolution 2.15 Å R-free 0.200 |
| 7DTB Room tempeature structure of lysozyme by fixed-target serial crystallography Deposited 2021-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.65 Å R-free 0.209 |
| 7DTF Room temperature structure of lysozyme by serial millisecond crystallography Deposited 2021-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.85 Å R-free 0.256 |
| 7E02 Room temperature structure of lysozyme delivered in beef tallow by serial millisecond crystallography Deposited 2021-01-26 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.55 Å R-free 0.188 |
| 7F26 Crystal structure of lysozyme Deposited 2021-06-10 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.2M citric acid and 0.2M sodium acetate were mixed in a ratio of 1:1 to form a buffer solution, and the buffer solution was mixed with 12%-16% sodium chloride in a ratio of 1:1 to form the mother liquor
|
Resolution 1.70 Å R-free 0.198 |
| 7FCU X-ray structure of D2O-solvent lysozyme Deposited 2021-07-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NI NICKEL (II) ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 1.42 Å R-free 0.190 |
| 7FCW X-ray structure of H2O-solvent lysozyme Deposited 2021-07-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NI NICKEL (II) ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 1.43 Å R-free 0.186 |
| 7FG8 H/D exchanged Hen egg-white lysozyme denatured in acidic conditions and refolded in solution Deposited 2021-07-26 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；NACL, SODIUM ACETATE-D3, ACETIC ACID-D4
|
Resolution not provided |
| 7FGU H/D exchanged Hen egg-white lysozyme denatured in basic conditions and refolded in solution Deposited 2021-07-28 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；NACL, SODIUM ACETATE-D3, ACETIC ACID-D4, 100% D2O, PH 4.6
|
Resolution not provided |
| 7FGV H/D exchanged Hen egg-white lysozyme denatured in heat condition and refolded in solution Deposited 2021-07-28 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
Experimental method not declared
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；NACL, SODIUM ACETATE-D3, ACETIC ACID-D4, 100% D2O, PH 4.6, VAPOR DIFFUSION, SITTING DROP
|
Resolution not provided |
| 7JMU Hen egg-white lysozyme with ionic liquid ethylammonium nitrate Deposited 2020-08-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；298.15 K；5.7% w/v ethylammonium nitrate
|
Resolution 1.20 Å R-free 0.183 |
| 7JMU Hen egg-white lysozyme with ionic liquid ethylammonium nitrate Deposited 2020-08-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；298.15 K；5.7% w/v ethylammonium nitrate
|
Resolution 1.20 Å R-free 0.183 |
| 7KH5 Hen Egg White Lysozyme in complex with tetrabromoterephthalic acid Deposited 2020-10-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | WE4 2,3,5,6-tetrabromobenzene-1,4-dicarboxylic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；289.15 K；0.2 M Potassium sulfate, 20% w/v Polyethylene glycol 3,350
|
Resolution 1.29 Å R-free 0.224 |
| 7KNK STRUCTURE OF HEN EGG-WHITE LYSOZYME grown with Kitchen recipe Deposited 2020-11-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.5；293 K；Rice vinegar, Common salt and Baking powder
|
Resolution 1.45 Å R-free 0.213 |
| 7L84 Hen Egg White Lysozyme by Native S-SAD at Room Temperature Deposited 2020-12-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；50 mM citrate buffer (pH 5.2 - 5.8), 20-25% PEG 4000, 20-25% glycerol
|
Resolution 1.70 Å R-free 0.162 |
| 7LLP X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 1 Deposited 2021-02-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium Sulfate well solution.
|
Resolution 1.13 Å R-free 0.155 |
| 7LN8 X-ray radiation damage series on Lysozyme at 277K, crystal structure, dataset 3 Deposited 2021-02-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.52 Å R-free 0.200 |
| 7LN9 X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 1 Deposited 2021-02-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.13 Å R-free 0.156 |
| 7LOQ X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 2 Deposited 2021-02-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.30 Å R-free 0.169 |
| 7LOR X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 3 Deposited 2021-02-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.52 Å R-free 0.197 |
| 7LP6 X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 2 (merged) Deposited 2021-02-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.13 Å R-free 0.156 |
| 7LPL X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 3 (merged) Deposited 2021-02-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.14 Å R-free 0.158 |
| 7LPM X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, crystal 2 Deposited 2021-02-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；Lysozyme was dissolved in 0.1 M Sodium Acetate pH 4.6 at 100 mg/ml and 5 microliters of this protein solution was mixed with 5 microliters of 0.1 M Sodium Acetate and 0.6 M Sodium Chloride solution pH 4.6. The 10 microliters drop was equilibrated against 0.7 milliliters of 2.2 M Ammonium sulfate well solution.
|
Resolution 1.10 Å R-free 0.158 |
| 7LYZ PROTEIN MODEL BUILDING BY THE USE OF A CONSTRAINED-RESTRAINED LEAST-SQUARES PROCEDURE Deposited 1977-05-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å |
| 7MRP MicroED structure of lysozyme from milled crystals at 1.75A Deposited 2021-05-07 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 4 CL CHLORIDE ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.75 Å R-free 0.213 |
| 7NJF Hen egg white lysozyme (HEWL) grown inside HARE serial crystallography chip Deposited 2021-02-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；33% PEG 4000, 0.5 M NaCl, 50 mM sodium acetate pH 4.5
|
Resolution 1.70 Å R-free 0.203 |
| 7NKF Hen egg white lysozyme (HEWL) Grown inside (Not centrifuged) HARE serial crystallography chip. Deposited 2021-02-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；33% PEG 4000, 0.5 M NaCl, 50 mM sodium acetate pH 4.5
|
Resolution 1.70 Å R-free 0.212 |
| 7O2O Lysozyme structure from microfluidic-based in situ data collection Deposited 2021-03-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；283.15 K；50 mM NaOAc/HOAc, pH 3.5
1 M NaCl
35% EG, 12.5% PEG-3350
|
Resolution 1.83 Å R-free 0.196 |
| 7OL5 Crystal structure of Lysozyme in complex with Hepes Deposited 2021-05-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | IPA ISOPROPYL ALCOHOL × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；0.1M Hepes, 10% isopropanol, 20% PEG 4000
|
Resolution 0.94 Å R-free 0.163 |
| 7OL6 Crystal structure of Lysozyme in complex with Imidazole Deposited 2021-05-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 IMD IMIDAZOLE × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；0.2M NaCl, 0.1M Imidazole, 10mM NaH2PO4 plus 10% TFE in the reservoir
|
Resolution 1.10 Å R-free 0.160 |
| 7OL7 Crystal structure of Lysozyme in complex with trifluoroethanol: tetragonal form Deposited 2021-05-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 ETF TRIFLUOROETHANOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；298 K；0.4M NaCl, 0.1M Sodium Acetate plus 15% TFE in the reservoir
|
Resolution 1.15 Å R-free 0.174 |
| 7OL8 Crystal structure of Lysozyme in complex with trifluoroethanol: orthorhombic form Deposited 2021-05-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ETF TRIFLUOROETHANOL × 2 SO4 SULFATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；298 K；0.3M NaCl, 0.1M MES, 10mM NaH2PO4 plus 20% TFE in the reservoir
|
Resolution 1.15 Å R-free 0.182 |
| 7P6M Hydrogenated refolded hen egg-white lysozyme Deposited 2021-07-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
18–147（130 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；291 K；0.05 M sodium acetate pH 4.5, 0.3 M sodium nitrate, micro seeds of G. gallus HEWL
|
Resolution 0.89 Å R-free 0.153 |
| 7PNH X-ray structure of the adduct formed upon reaction of Pt(II) complex 2c with lysozyme Deposited 2021-09-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 NO3 NITRATE ION × 8 PT PLATINUM (II) ION × 2 DMS DIMETHYL SULFOXIDE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；20% ethylene glycol
0.1 M sodium acetate buffer pH 4.0
0.6 M sodium nitrate
|
Resolution 1.22 Å R-free 0.174 |
| 7Q04 Crystal structure of TPADO in a substrate-free state Deposited 2021-10-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
19–147（129 aa）
|
Not recorded | FES FE2/S2 (INORGANIC) CLUSTER × 3 FE FE (III) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；12.5% MPD,
12.5% PEG 3350,
12.5% PEG 1000,
0.3 M sodium nitrate,
0.3 M sodium phosphate dibasic,
0.3 M ammonium sulfate,
0.1 M buffer Imidazole/MES pH 6.5
|
Resolution 2.28 Å R-free 0.225 |
| 7Q05 Crystal structure of TPADO in complex with TPA Deposited 2021-10-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
19–147（129 aa）
|
Not recorded | FES FE2/S2 (INORGANIC) CLUSTER × 3 SO4 SULFATE ION × 11 UB7 terephthalic acid × 3 FE FE (III) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；12.5% MPD,
12.5% PEG 3350,
12.5% PEG 1000,
0.3 M sodium nitrate,
0.3 M sodium phosphate dibasic,
0.3 M ammonium sulfate,
0.1 M buffer Imidazole/MES pH 6.5
|
Resolution 2.08 Å R-free 0.214 |
| 7Q06 Crystal structure of TPADO in complex with 2-OH-TPA Deposited 2021-10-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
19–147（129 aa）
|
Not recorded | SO4 SULFATE ION × 6 FES FE2/S2 (INORGANIC) CLUSTER × 3 FE FE (III) ION × 2 8IB 2-Hydroxyterephthalic acid × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；12.5% MPD,
12.5% PEG 3350,
12.5% PEG 1000,
0.3 M sodium nitrate,
0.3 M sodium phosphate dibasic,
0.3 M ammonium sulfate,
0.1 M buffer Imidazole/MES pH 6.5
|
Resolution 1.95 Å R-free 0.202 |
| 7Q0T Lysozyme soaked with V(IV)OSO4 Deposited 2021-10-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 ACT ACETATE ION × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 4 V VANADIUM ION × 3 O OXYGEN ATOM × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.34 Å R-free 0.171 |
| 7Q0U Lysozyme soaked with V(IV)OSO4 and bipy Deposited 2021-10-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 0BP 2,2'-bipyridine × 1 V VANADIUM ION × 1 O OXYGEN ATOM × 1 CL CHLORIDE ION × 5 NA SODIUM ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.19 Å R-free 0.156 |
| 7Q0V Lysozyme soaked with V(IV)OSO4 and phen Deposited 2021-10-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | PHN 1,10-PHENANTHROLINE × 1 V VANADIUM ION × 4 O OXYGEN ATOM × 1 NA SODIUM ION × 1 CL CHLORIDE ION × 6 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；4-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
|
Resolution 1.12 Å R-free 0.176 |
| 7QNP Designed Armadillo repeat protein N(A4)M4C(AII) co-crystallized with hen egg white lysozyme Deposited 2021-12-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain BBB
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 7 DIO 1,4-DIETHYLENE DIOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；35% (v/v) dioxane, pH undefined
|
Resolution 1.59 Å R-free 0.218 |
| 7QQ1 X-ray structure of the adduct obtained upon reaction of [cis-Rh2(OCOCH3)2(OCOCF3)2] with HEWL Deposited 2022-01-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 RH Rhodium × 3 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.10 M HEPES pH 7.5
2.00 M sodium formate
|
Resolution 1.48 Å R-free 0.224 |
| 7R1Q X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au2 with lysozyme Deposited 2022-02-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 1 AU GOLD ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate
0.1 M hepes buffer pH 7.5
|
Resolution 1.10 Å R-free 0.170 |
| 7RXY Hen egg-white lysozyme with ionic liquid ethylammonium nitrate 5 mol% Deposited 2021-08-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293.15 K；ionic liquid ethylammonium nitrate 5 mol% (ca. 24wt%) in water
|
Resolution 1.60 Å R-free 0.207 |
| 7RXY Hen egg-white lysozyme with ionic liquid ethylammonium nitrate 5 mol% Deposited 2021-08-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain BBB
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293.15 K；ionic liquid ethylammonium nitrate 5 mol% (ca. 24wt%) in water
|
Resolution 1.60 Å R-free 0.207 |
| 7RYD Hen egg-white lysozyme with ionic liquid butylammonium nitrate 1 mol% Deposited 2021-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；298.15 K；butylammonium nitrate 1 mol% (ca. 7wt%) in water
|
Resolution 1.18 Å R-free 0.230 |
| 7RYD Hen egg-white lysozyme with ionic liquid butylammonium nitrate 1 mol% Deposited 2021-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain BBB
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；298.15 K；butylammonium nitrate 1 mol% (ca. 7wt%) in water
|
Resolution 1.18 Å R-free 0.230 |
| 7RYK Hen egg-white lysozyme with ionic liquid ethanolammonium nitrate 1 mol% Deposited 2021-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；293.15 K；ethanolammonium nitrate 1mol% (ca. 7wt%) in water
|
Resolution 1.76 Å R-free 0.224 |
| 7RYK Hen egg-white lysozyme with ionic liquid ethanolammonium nitrate 1 mol% Deposited 2021-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain BBB
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；293.15 K；ethanolammonium nitrate 1mol% (ca. 7wt%) in water
|
Resolution 1.76 Å R-free 0.224 |
| 7RZ0 Hen egg-white lysozyme with ionic liquid ethanolammonium formate 6.7 mol% Deposited 2021-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | FMT FORMIC ACID × 5 ETA ETHANOLAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；ethanolammonium formate 6.7 mol% (ca. 30wt%) in water
|
Resolution 1.38 Å R-free 0.176 |
| 7RZ1 Hen egg-white lysozyme with ionic liquid ethanolammonium formate 14.4 mol% Deposited 2021-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | FMT FORMIC ACID × 5 ETA ETHANOLAMINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；ethanolammonium formate 14.4mol% (ca. 50wt%) in water
|
Resolution 2.05 Å R-free 0.243 |
| 7RZ2 Hen egg-white lysozyme with ionic liquid ethanolammonium formate 4 mol% Deposited 2021-08-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | FMT FORMIC ACID × 5 ETA ETHANOLAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；ethanolammonium formate 4mol% (ca. 20wt%) in water
|
Resolution 1.07 Å R-free 0.170 |
| 7S27 Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.216 |
| 7S28 Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.202 |
| 7S29 Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.218 |
| 7S2A Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.218 |
| 7S2B Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.213 |
| 7S2C Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.210 |
| 7S2D Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.206 |
| 7S2E Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.212 |
| 7S2F Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.58 Å R-free 0.244 |
| 7S2G Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.255 |
| 7S2Q Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.214 |
| 7S2U Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.208 |
| 7S2V Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.232 |
| 7S2W Crystal structure of hen egg white lysozyme Deposited 2021-09-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.251 |
| 7S30 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.216 |
| 7S31 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.236 |
| 7S32 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.223 |
| 7S33 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.196 |
| 7S34 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.238 |
| 7S35 Crystal structure of hen egg white lysozyme Deposited 2021-09-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.243 |
| 7S4W Serial Macromolecular Crystallography at ALBA Synchrotron Light Source - Lysozyme Deposited 2021-09-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；298 K；0.1 M sodium acetate pH 3.0, 18 % (w/v) sodium chloride, 6% PEG 400
|
Resolution 2.10 Å R-free 0.232 |
| 7SKW Ab initio structure of triclinic lysozyme from electron-counted MicroED data Deposited 2021-10-21 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 0.87 Å R-free 0.221 |
| 7TUM Multi-Hit SFX using MHz XFEL sources- first hit Deposited 2022-02-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；293 K；NaCl, ethylene glycol, PEG 3350, acetate buffer pH 3.5
|
Resolution 3.20 Å R-free 0.426 |
| 7ULY MicroED structure of triclinic lysozyme Deposited 2022-04-05 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 4 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 0.87 Å R-free 0.220 |
| 7VEI Neutron structure of D2O-solvent lysozyme Deposited 2021-09-08 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NI NICKEL (II) ION × 1 CL CHLORIDE ION × 1 |
NEUTRON DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.5；293 K；15-25mg/mL HEWL, 50mM sodium acetate (pH4.5), 0.1g/mL NiCl2
|
Resolution 2.00 Å R-free 0.215 |
| 7VGO Hen egg lysozyme Deposited 2021-09-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.20 Å R-free 0.162 |
| 7VGP Hen egg lysozyme refolded after denaturation at acidic pH Deposited 2021-09-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.91 Å R-free 0.255 |
| 7VGP Hen egg lysozyme refolded after denaturation at acidic pH Deposited 2021-09-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；0.1M sodium acetate, 8%(w/v) sodium chloride, 0.1M cesium chloride
|
Resolution 1.91 Å R-free 0.255 |
| 7WBD Crystal structure of lysozyme (multilcrystal diffraction, CrystFEL/XGANDALF) Deposited 2021-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.15 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å R-free 0.264 |
| 7WBE Crystal structure of lysozyme (multilcrystal diffraction, CrystFEL/MOSFLM) Deposited 2021-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.15 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.90 Å R-free 0.246 |
| 7WBF Crystal structure of lysozyme Deposited 2021-12-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.5；293.15 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å R-free 0.209 |
| 7WKR Room temperature structure of lysozyme solved by serial synchrotron crystallography Deposited 2022-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, PEG 8000, NaCl
|
Resolution 1.60 Å R-free 0.198 |
| 7WUC Room-temperature structure of lysozyme by serial femtosecond crystallography (BITS) Deposited 2022-02-08 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；298.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 2.10 Å R-free 0.249 |
| 7WXS Lysozyme protected by polyacrylamide gel Deposited 2022-02-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；277 K；50mM sodium acetate, 1.5M NaCl, pH 4.5
|
Resolution 1.25 Å R-free 0.195 |
| 7Y6A Crystal structure of Chicken Egg Lysozyme Deposited 2022-06-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；294 K；0.09 M HEPES-NaOH pH 7.5, 1.26 M sodium citrate tribasic dihydrate, 10% v/v glycerol
|
Resolution 1.50 Å R-free 0.256 |
| 7YNU Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine Deposited 2022-08-01 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 CL CHLORIDE ION × 5 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.6；293 K；28% NaCl, 8% PEG6000, 100 mM Na-acetate (pH3.6)
|
Resolution 1.44 Å R-free 0.223 |
| 7YNV Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine Deposited 2022-08-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.6；293 K；28% NaCl, 8% PEG6000, 100 mM Na-acetate (pH3.6)
|
Resolution 1.39 Å R-free 0.192 |
| 7YRK Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex Deposited 2022-08-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 4 JI6 (6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one × 1 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；0.1 M of acetic acid-sodium acetate buffer (pH 4.7) including 2-6 % (m/v) of NaCl
|
Resolution 0.92 Å R-free 0.128 |
| 7Z6J X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with HEWL Deposited 2022-03-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NA SODIUM ION × 1 RH Rhodium × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.10 M HEPES pH 7.5
2.00 M sodium formate
|
Resolution 1.53 Å R-free 0.248 |
| 7ZU6 Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to tetra-vanadate ion (structure 1) Deposited 2022-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 V4O CYCLO-TETRAMETAVANADATE × 1 VVB bis(oxidanyl)vanadium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate
0.1 M hepes buffer pH 7.5
|
Resolution 1.18 Å R-free 0.196 |
| 8A9D Multicrystal room temperature structure of Lysozyme collected using a double multilayer monochromator. Deposited 2022-06-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 4.5；293 K；1M NaCl, 0.1 Na Acetate pH 4.5, 30% (v/v) PEG 400.
|
Resolution 2.10 Å R-free 0.249 |
| 8A9E Lysozyme, 9-11 fs FEL pulses as determined by XTCAV Deposited 2022-06-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4；293 K；10 % NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in 100 mM gadoteridol 30 min. before data collection
|
Resolution 1.67 Å R-free 0.240 |
| 8A9R Tetragonal Hen Egg-White (HEW) Lysozyme soaked in reduced resazurin in a glovebox and flash-cooled using a miniature-airlock Deposited 2022-06-29 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；100 mM sodium acetate pH 4.6, 1M NaCl
|
Resolution 1.60 Å R-free 0.230 |
| 8AAZ High resolution X-ray analysis of ATP lysozyme complex in the presence of 80 mM ATP Deposited 2022-07-04 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；294 K；10 mM Tris-HCl pH 7.0, 80 mM Na2-ATP
|
Resolution 1.27 Å R-free 0.171 |
| 8AJ3 X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure A) Deposited 2022-07-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 H1W pentakis(oxidanyl)vanadium × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 MKO 8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene] × 1 MNW 8,8,8,8-tetrakis($l^{1}-oxidanyl)-2-methyl-3,7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1,5-diene × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；2.0 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.13 Å R-free 0.249 |
| 8AJ4 X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure A') Deposited 2022-07-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 MKO 8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene] × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate
0.1 M hepes pH 7.5
|
Resolution 1.22 Å R-free 0.203 |
| 8AJ5 X-ray structure of lysozyme obtained upon reaction with [VIVO(malt)2] (Structure B) Deposited 2022-07-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 VO4 VANADATE ION × 3 VVO oxovanadium(2+) × 1 VVB bis(oxidanyl)vanadium × 1 ACT ACETATE ION × 2 NO3 NITRATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium nitrate
|
Resolution 1.31 Å R-free 0.198 |
| 8B3L Hen Egg White Lysozyme 2s in situ crystallization Deposited 2022-09-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；293 K；0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.71 Å R-free 0.209 |
| 8B3T Hen Egg White Lysozyme 4s in situ crystallization Deposited 2022-09-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；293 K；0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.78 Å R-free 0.200 |
| 8B3U Hen Egg White Lysozyme 6s in situ crystallization Deposited 2022-09-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；293 K；0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.71 Å R-free 0.194 |
| 8B3V Hen Egg White Lysozyme 8s in situ crystallization Deposited 2022-09-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；293 K；0.1 M sodium acetate, pH 4.6, 2.7 M NaCl, 15 % PEG4000, 6 % ethylene glycol
|
Resolution 1.74 Å R-free 0.185 |
| 8BOV X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 7.5 Deposited 2022-11-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 ACT ACETATE ION × 2 R0I 1-[1,3-dimethyl-4-(1~{H}-1,2,3-triazol-5-yl)imidazol-1-ium-2-yl]-1,2',11'-trimethyl-spiro[1$l^{6}-platinacycloprop-2-ene-1,15'-1,12-diaza-15$l^{6}-platinatetracyclo[10.2.1.0^{5,14}.0^{8,13}]pentadeca-2,4,6,8,10,13-hexaene] × 1 DMS DIMETHYL SULFOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate
0.1 M Hepes buffer pH 7.5
|
Resolution 1.25 Å R-free 0.218 |
| 8BOY X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 4.0 Deposited 2022-11-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 10 R0I 1-[1,3-dimethyl-4-(1~{H}-1,2,3-triazol-5-yl)imidazol-1-ium-2-yl]-1,2',11'-trimethyl-spiro[1$l^{6}-platinacycloprop-2-ene-1,15'-1,12-diaza-15$l^{6}-platinatetracyclo[10.2.1.0^{5,14}.0^{8,13}]pentadeca-2,4,6,8,10,13-hexaene] × 1 PT PLATINUM (II) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；20% ethylene glycol
0.1 M sodium acetate pH 4.0
0.6 M sodium Nitrate
|
Resolution 1.33 Å R-free 0.219 |
| 8BPH X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 3) Deposited 2022-11-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | SIN SUCCINIC ACID × 1 R3D Ru2-(OH)8 cluster × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid
|
Resolution 1.07 Å R-free 0.209 |
| 8BPJ X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 1) Deposited 2023-01-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 NO3 NITRATE ION × 5 TZ6 9,11-bis(4-fluorophenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；20% ethylene glycol, 0.1 M sodium acetate buffer at pH 4.0, 0.6 M sodium nitrate
|
Resolution 1.38 Å R-free 0.231 |
| 8BPU X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 2) Deposited 2022-11-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 R2I 9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 1 R2U Ru2-(OH)6 cluster × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate, 0.1 M Hepes buffer pH 7.5
|
Resolution 1.81 Å R-free 0.289 |
| 8BQM X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 4) Deposited 2022-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 1 ACT ACETATE ION × 2 R2U Ru2-(OH)6 cluster × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M sodium chloride, 0.1 M sodium acetate buffer pH 4.0
|
Resolution 1.17 Å R-free 0.225 |
| 8BQP Hen Egg-White Lysozyme (HEWL) complexed with methyl-functionalised Anderson-Evans polyoxometalate Deposited 2022-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | U7U Mn-Mo(6)-O(24)-C(10) cluster × 1 ACT ACETATE ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；130 mg/mL Lysozyme, 20 mM AE-CH3, 1.0 M lithium chloride, 0.1 M sodium acetate and 30% (w/v) PEG 6000
|
Resolution 1.24 Å R-free 0.167 |
| 8BQQ Hen Egg-White Lysozyme (HEWL) complexed with amine-functionalised Anderson-Evans polyoxometalate Deposited 2022-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | RJU Mn-Mo(6)-N(2)-O(24)-C(8) cluster × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；130 mg/mL Lysozyme, 20 mM AE-NH2, 1.0 M lithium chloride, 0.1 M sodium acetate and 30% (w/v) PEG 6000
|
Resolution 1.57 Å R-free 0.232 |
| 8BQR Hen Egg-White Lysozyme (HEWL) complexed with biotin-functionalised Anderson-Evans polyoxometalate Deposited 2022-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | R9H Anderson-Evans polyoxometalate (biotin-functionalised) × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；50 mg/mL Lysozyme, 200 mg/mL AE-Biot, of 0.5 M calcium chloride, 30% (w/v) PEG 4000 and 0.1 M HEPES buffer (pH 8.5).
|
Resolution 2.32 Å R-free 0.278 |
| 8BQT Hen Egg-White Lysozyme (HEWL) complexed with two methyl-functionalised Anderson-Evans polyoxometalates Deposited 2022-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | U7U Mn-Mo(6)-O(24)-C(10) cluster × 2 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；130 mg/mL Lysozyme, 20 mM AE-CH3, 0.1 M magnesium chloride, 0.1 M sodium acetate buffer (pH 4.6) and 25% (w/v) PEG 400.
|
Resolution 1.47 Å R-free 0.202 |
| 8C39 X-ray structure of HEWL upon reaction with a Ruthenium(II)-arene Complexed with Glycosylated Carbene Ligands (5) Deposited 2022-12-23 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 NO3 NITRATE ION × 10 CL CHLORIDE ION × 1 T8K [1-[(3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-3-methyl-imidazol-1-ium-2-yl]-nitrooxy-tris(oxidanyl)ruthenium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；20% ethylene glycol, 0.1 M sodium acetate buffer at pH 4.0, 0.6 M sodium nitrate
|
Resolution 1.20 Å R-free 0.221 |
| 8CPC 3D electron diffraction structure of Hen Egg-White Lysozyme from nano-crystals obtained by high pressure freezing and cryo-sectioning Deposited 2023-03-02 | Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 5.5；100 mM sodium citrate pH 5.5, 0.8-1.6 M NaCl
cryo-EM vitrification conditions
Cryogen NITROGEN；Freezing carried out at high pressure (210 MPa) and -196 C, using a Leica EM HPM100
|
Resolution 2.91 Å R-free 0.295 |
| 8CVU 20ns Temperature-Jump (Light) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.172 |
| 8CVV 20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.170 |
| 8CVW 20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.167 |
| 8CW0 20us Temperature-Jump (Light) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.167 |
| 8CW1 20us Temperature-Jump (Dark1) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.168 |
| 8CW3 20us Temperature-Jump (Dark2) XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.169 |
| 8CW5 200us Temperature-Jump (Light) XFEL structure of Lysozyme Deposited 2022-05-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.181 |
| 8CW6 200us Temperature-Jump (Dark1) XFEL structure of Lysozyme Deposited 2022-05-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.65 Å R-free 0.172 |
| 8CW7 200us Temperature-Jump (Dark2) XFEL structure of Lysozyme Deposited 2022-05-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.176 |
| 8CW8 Laser Off Temperature-Jump XFEL structure of Lysozyme Deposited 2022-05-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme [20 mg/ml dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.57 Å R-free 0.183 |
| 8CWB Laser Off Temperature-Jump XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.51 Å R-free 0.168 |
| 8CWC 20ns Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å R-free 0.169 |
| 8CWD 20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å R-free 0.163 |
| 8CWE 20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.48 Å R-free 0.162 |
| 8CWF 200us Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å R-free 0.166 |
| 8CWG 200us Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å R-free 0.167 |
| 8CWH 200us Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose Deposited 2022-05-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 2 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；291 K；Lysozyme-inhibitor complex [20 mg/ml lysozyme plus 10 mg/ml N,N'-diacetylchitobiose dissolved in 0.1 M sodium acetate at pH 3.0] mixed with precipitant [28% (w/v) NaCl, 8% (w/v) PEG6000 and 0.1 M sodium acetate at pH 3.0] in a 1:1 ratio
|
Resolution 1.50 Å R-free 0.168 |
| 8D5S Crystal structure of hen egg white lysozyme at 100 Kelvin Deposited 2022-06-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.213 |
| 8D5T Crystal structure of hen egg white lysozyme at 100 Kelvin (Duplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.212 |
| 8D5U Crystal structure of hen egg white lysozyme at 100 Kelvin (Triplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.212 |
| 8D5W Crystal structure of hen egg white lysozyme at 125 Kelvin Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.214 |
| 8D5X Crystal structure of hen egg white lysozyme at 125 Kelvin (Duplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.214 |
| 8D5Z Crystal structure of hen egg white lysozyme at 125 Kelvin (Triplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.217 |
| 8D60 Crystal structure of hen egg white lysozyme at 150 Kelvin Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.209 |
| 8D61 Crystal structure of hen egg white lysozyme at 150 Kelvin (Duplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.211 |
| 8D62 Crystal structure of hen egg white lysozyme at 150 Kelvin (Triplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.190 |
| 8D69 Crystal structure of hen egg white lysozyme at 175 Kelvin Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.220 |
| 8D6B Crystal structure of hen egg white lysozyme at 175 Kelvin (Duplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.204 |
| 8D6I Crystal structure of hen egg white lysozyme at 175 Kelvin (Triplicate) Deposited 2022-06-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.223 |
| 8D75 Crystal structure of hen egg white lysozyme at 200 Kelvin Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.202 |
| 8D77 Crystal structure of hen egg white lysozyme at 200 Kelvin (Duplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.202 |
| 8D7A Crystal structure of hen egg white lysozyme at 200 Kelvin (Triplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.195 |
| 8D7B Crystal structure of hen egg white lysozyme at 225 Kelvin Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.226 |
| 8D7C Crystal structure of hen egg white lysozyme at 225 Kelvin (Duplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.195 |
| 8D7D Crystal structure of hen egg white lysozyme at 225 Kelvin (Triplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.207 |
| 8D7J Crystal structure of hen egg white lysozyme at 250 Kelvin Deposited 2022-06-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.191 |
| 8D7L Crystal structure of hen egg white lysozyme at 250 Kelvin (Duplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.196 |
| 8D7Q Crystal structure of hen egg white lysozyme at 250 Kelvin (Triplicate) Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.220 |
| 8D7S Crystal structure of hen egg white lysozyme at 275 Kelvin Deposited 2022-06-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.234 |
| 8D8A Crystal structure of hen egg white lysozyme at 275 Kelvin (Duplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.260 |
| 8D8B Crystal structure of hen egg white lysozyme at 275 Kelvin (Triplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.190 |
| 8D8C Crystal structure of hen egg white lysozyme at 300 Kelvin Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.228 |
| 8D8D Crystal structure of hen egg white lysozyme at 300 Kelvin (Duplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.203 |
| 8D8E Crystal structure of hen egg white lysozyme at 300 Kelvin (Triplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.196 |
| 8D8F Crystal structure of hen egg white lysozyme at 325 Kelvin Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.243 |
| 8D8G Crystal structure of hen egg white lysozyme at 325 Kelvin (Duplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.236 |
| 8D8H Crystal structure of hen egg white lysozyme at 325 Kelvin (Triplicate) Deposited 2022-06-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 7 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；295 K；1.2 M NaCl and 100 mM AcONa pH 4.6
|
Resolution 1.50 Å R-free 0.241 |
| 8DCT Lysozyme cluster 3 dual apo structure Deposited 2022-06-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å R-free 0.265 |
| 8DCU Lysozyme cluster 0028 (benzamidine ligand) Deposited 2022-06-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å R-free 0.262 |
| 8DCV Lysozyme cluster 0043, NAG ligand Deposited 2022-06-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å R-free 0.187 |
| 8DCW Lysozyme cluster 0062 (NAG and benzamidine ligands) Deposited 2022-06-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 BEN BENZAMIDINE × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；4% SODIUM CHLORIDE, 100MM SODIUM
ACETATE PH 4.6, 120MG/ML
|
Resolution 2.00 Å R-free 0.237 |
| 8DYZ Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset Deposited 2022-08-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.8；295 K；Reservoir contained 1.1 M NaCl, 0.1 M NaOAc pH 4.8. Drops contained 2 microliters each of 40 mg/mL protein and well solution.
|
Resolution 1.27 Å R-free 0.133 |
| 8DZ7 Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset Deposited 2022-08-06 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；318 K；Reservoir contained 1.0-1.1 M NaCl, 0.1 M NaOAc pH 4.6. Drops of 30 microliters contained a 1:2 ratio of 90-100 mg/mL protein and reservoir solution.
|
Resolution 1.34 Å R-free 0.136 |
| 8E54 MicroED structure of triclinic lysozyme recorded on K3 Deposited 2022-08-19 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
1–147（147 aa）
|
Not recorded | NO3 NITRATE ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.20 Å R-free 0.242 |
| 8EZO Lysozyme Anomalous Dataset at 220 K and 7.1 keV Deposited 2022-11-01 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 10 NA SODIUM ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å R-free 0.191 |
| 8EZP Lysozyme Anomalous Dataset at 260 K and 7.1 keV Deposited 2022-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 7 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å R-free 0.172 |
| 8EZU Lysozyme Anomalous Dataset at 273 K and 7.1 keV Deposited 2022-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 11 NA SODIUM ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å R-free 0.171 |
| 8EZX Lysozyme Anomalous Dataset at 293 K and 7.1 keV Deposited 2022-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 8 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å R-free 0.166 |
| 8F00 Lysozyme Anomalous Dataset at 293 K and 12 keV Deposited 2022-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 10 NA SODIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate
|
Resolution 1.20 Å R-free 0.146 |
| 8F0B Lysozyme Anomalous Dataset at 240 K and 7.1 keV Deposited 2022-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 10 NA SODIUM ION × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
|
Resolution 1.90 Å R-free 0.198 |
| 8F28 Lysozyme Structures from Single-Entity Crystallization Method NanoAC Deposited 2022-11-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | ACT ACETATE ION × 3 NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.8；295 K；A new crystallization method named NanoAC was used. Protein solution and precipitant solution were connected through a single nanopipette to control (in time and space) nucleation and crystal growth
|
Resolution 1.20 Å R-free 0.170 |
| 8F2G Crystal structure of Hen Egg White Lysozyme at 0.44 GPa Deposited 2022-11-08 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；293 K；1 M NaCl, 100 mM Na acetate, pH 4.7
|
Resolution 1.84 Å R-free 0.263 |
| 8FP6 Crystal structure of hen egg white lysozyme Deposited 2023-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.228 |
| 8FP7 Crystal structure of hen egg white lysozyme Deposited 2023-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.245 |
| 8FP8 Crystal structure of hen egg white lysozyme Deposited 2023-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.219 |
| 8FPB Crystal structure of hen egg white lysozyme Deposited 2023-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.254 |
| 8FPD Crystal structure of hen egg white lysozyme Deposited 2023-01-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.291 |
| 8FPM Crystal structure of hen egg white lysozyme Deposited 2023-01-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.279 |
| 8FPN Crystal structure of hen egg white lysozyme Deposited 2023-01-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.292 |
| 8FPP Crystal structure of hen egg white lysozyme Deposited 2023-01-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.240 |
| 8FPR Crystal structure of hen egg white lysozyme Deposited 2023-01-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.253 |
| 8FPU Crystal structure of hen egg white lysozyme Deposited 2023-01-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.262 |
| 8FRY Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.269 |
| 8FS0 Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.287 |
| 8FS9 Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.305 |
| 8FSA Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.267 |
| 8FSC Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.230 |
| 8FSF Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.239 |
| 8FSG Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.246 |
| 8FSH Crystal structure of hen egg white lysozyme Deposited 2023-01-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.238 |
| 8FSM Crystal structure of hen egg white lysozyme Deposited 2023-01-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.250 |
| 8FSN Crystal structure of hen egg white lysozyme Deposited 2023-01-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.263 |
| 8FST Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.249 |
| 8FSU Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.256 |
| 8FSV Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.250 |
| 8FSW Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.265 |
| 8FSX Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.287 |
| 8FSY Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.282 |
| 8FT0 Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.294 |
| 8FT1 Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.271 |
| 8FT2 Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.307 |
| 8FT3 Crystal structure of hen egg white lysozyme Deposited 2023-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；pH 4.6；295 K；1.2 M NaCl, 100 mM Sodium Acetate, 50 mg/mL Lyzozyme, 30% Glycerol for cryoprotection
|
Resolution 1.60 Å R-free 0.240 |
| 8GMV Crystal structure of lysozyme Deposited 2022-08-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.6；298 K；Na-acetate, NaCl, PEG 8000
|
Resolution 2.20 Å R-free 0.234 |
| 8GMW Crystal structure of lysozyme Deposited 2022-08-22 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.6；298 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.35 Å R-free 0.194 |
| 8GQ1 HyHEL10 Fab complexed with hen egg lysozyme carrying arginine cluster in framework region of light chain. Deposited 2022-08-28 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
19–147（129 aa）
|
Not recorded | 1PE PENTAETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；PEG 400, sodium citrate tribasic dihydrate, Tris hydrochloride
|
Resolution 3.13 Å R-free 0.267 |
| 8H3W Crystal structure of chicken egg lysozyme at ambient temperature Deposited 2022-10-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.09 M HEPES-NaOH pH 7.5, 1.26 M sodium citrate tribasic dihydrate, 10% v/v glycerol
|
Resolution 2.39 Å R-free 0.225 |
| 8H8T Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, edge) Deposited 2022-10-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；298.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å R-free 0.232 |
| 8H8U Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, center) Deposited 2022-10-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；298.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å R-free 0.234 |
| 8H8V Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, edge) Deposited 2022-10-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；298.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å R-free 0.256 |
| 8H8W Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, center) Deposited 2022-10-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；298.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.70 Å R-free 0.256 |
| 8JQV Hen egg-white lysozyme solved from 1D fixed target delivery system Deposited 2023-06-15 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4；291 K；0.1M sodium acetate pH4.0, 2M NaCl, 5% PEG 6K
|
Resolution 1.83 Å R-free 0.230 |
| 8K8M Crystallographic structure of Lysozyme C from chicken Deposited 2023-07-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIQUID DIFFUSION；pH 4.6；298 K；5%(w/v) NaCl, 0.1M Na acetate pH4.6
|
Resolution 1.60 Å R-free 0.188 |
| 8LYZ AN X-RAY STUDY OF THE STRUCTURE AND BINDING PROPERTIES OF IODINE-INACTIVATED LYSOZYME Deposited 1977-09-16 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å |
| 8OM8 X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure A) Deposited 2023-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 VSU tris-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(V)3O7 × 1 VTZ 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.08 Å R-free 0.190 |
| 8OMS X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure B) Deposited 2023-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | VTU bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid at pH 7.0
|
Resolution 1.10 Å R-free 0.167 |
| 8OMT X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure C) Deposited 2023-03-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 VTU bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 × 1 VTZ 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate
0.1 M Hepes buffer pH 7.5
|
Resolution 1.10 Å R-free 0.144 |
| 8OWC Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4 Deposited 2023-04-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 7MT Tb-Xo4 × 1 CL CHLORIDE ION × 7 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；650 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.70 Å R-free 0.209 |
| 8P1A Lysozyme structure solved from serial crystallography data collected at 2 kHz for 5 seconds with JUNGFRAU detector at MAXIV Deposited 2023-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；293 K；22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 2.05 Å R-free 0.226 |
| 8P1B Lysozyme structure solved from serial crystallography data collected at 2 kHz with JUNGFRAU detector at MAXIV Deposited 2023-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；293 K；22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.70 Å R-free 0.192 |
| 8P1C Lysozyme structure solved from serial crystallography data collected at 1 kHz with JUNGFRAU detector at MAXIV Deposited 2023-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；293 K；22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.58 Å R-free 0.197 |
| 8P1D Lysozyme structure solved from serial crystallography data collected at 100 Hz with JUNGFRAU detector at MAXIV Deposited 2023-05-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；293 K；22% NaCl, 6.4% polyethylene glycol 6000, 80 mM sodium acetate, pH 3.0
|
Resolution 1.60 Å R-free 0.190 |
| 8P2Q Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-OH Deposited 2023-05-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | WRT TbXo4-OH × 1 CL CHLORIDE ION × 5 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.69 Å R-free 0.195 |
| 8PFT X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition A Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 2 NO3 NITRATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.30 Å R-free 0.246 |
| 8PFU X-ray structure of the adduct formed upon reaction of Lysozyme with K3[Ru2(CO3)4] in condition A Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 NO3 NITRATE ION × 7 YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 4 CO3 CARBONATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.18 Å R-free 0.202 |
| 8PFV X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DAniF)(O2CCH3)3] in condition A Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 NO3 NITRATE ION × 5 YMQ 9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.46 Å R-free 0.211 |
| 8PFW X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DAniF)(CO3)3] in condition A Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 NO3 NITRATE ION × 3 YWR K2[Ru2(DAniF)(CO3)3] × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
|
Resolution 1.12 Å R-free 0.239 |
| 8PFX X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition B Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 FMT FORMIC ACID × 2 YJT 6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.03 Å R-free 0.214 |
| 8PFY X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DAniF)(CO3)3] in condition B Deposited 2023-06-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2 M sodium formate and 0.1 M Hepes, pH 7.5
|
Resolution 1.19 Å R-free 0.212 |
| 8PH5 X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)2(O2CCH3)2] in condition B Deposited 2023-06-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 ZJK 1-oxidanyl-6,8,9,11-tetraphenyl-2,4-dioxa-6,8,9,11-tetraza-1$l^{5},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate and 0.1 M HEPES buffer at pH 7.5
|
Resolution 1.29 Å R-free 0.280 |
| 8PH6 X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DPhF)(CO3)3] in condition B Deposited 2023-06-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 ZWL [Ru2(DPhF)(Formate)(CO3)] × 1 YWV [Ru2(DPhF)(Formate)] × 1 ZWO Ru2(DPhF)(CO3)3 × 1 ZXE Ru2(DPhF)(CO3)2(Formate) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate and 0.1 M HEPES buffer at pH 7.5
|
Resolution 1.07 Å R-free 0.193 |
| 8PH7 X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)(O2CCH3)3] in condition A Deposited 2023-06-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ZQ2 [Ru2(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol) × 1 SIN SUCCINIC ACID × 1 ZWH [Ru2Cl(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)(succinic acid)2] × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid at pH 7.0
|
Resolution 1.41 Å R-free 0.266 |
| 8PH8 X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)2(O2CCH3)2] in condition A Deposited 2023-06-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 SIN SUCCINIC ACID × 4 ZJO 1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid at pH 7.0
|
Resolution 1.29 Å R-free 0.187 |
| 8PIW Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-NMet2 Deposited 2023-06-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | TB TERBIUM(III) ION × 1 ZHT 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-[3-(dimethylamino)propyl]-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid × 1 CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.72 Å R-free 0.196 |
| 8POB Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-SO3 Deposited 2023-07-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | TB TERBIUM(III) ION × 2 ZW0 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-(3-sulfopropyl)-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid × 1 CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；950 mM sodium chloride, 100mM sodium acetate pH=4.6. Drops were set by mixing one volume of protein solution at 20mg/ml with one volume of 10mM TbXo4 and with one volume of the well solution.
|
Resolution 1.74 Å R-free 0.228 |
| 8PTE Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion (structure B) Deposited 2023-07-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 JQJ Polyoxidovanadate complex × 2 H1W pentakis(oxidanyl)vanadium × 2 NO3 NITRATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；298 K；20% ethylene glycol,
0.1 M sodium acetate buffer pH 4.0,
0.6 M sodium nitrate
|
Resolution 1.80 Å R-free 0.233 |
| 8QCU Lysozyme covalently bound to fac-[Re(CO)3-imidazole] complex, incubated for 38 weeks. Deposited 2023-08-28 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 5 NA SODIUM ION × 1 VHL Tricarbonyl di(imidazole) rhenium(I) × 2 REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1 IMD IMIDAZOLE × 1 RE RHENIUM × 6 BR BROMIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；290.15 K；HEWL, ReAA, Imidazole, 1.0 M NaCl, and 0.05 M sodium acetate at 4.5 pH.
|
Resolution 1.15 Å R-free 0.178 |
| 8QV8 Cryo-EM structure of the heat-irreversible amyloid fibrils of hen egg-white lysozyme Deposited 2023-10-17 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 15 PDB declaration: 15-meric |
Chain A
19–147（129 aa）
Chain C
19–147（129 aa）
Chain E
19–147（129 aa）
Chain G
19–147（129 aa）
Chain I
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7；20mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.26 Å |
| 8REG Lysozyme measured via serial crystallography from a kapton HARE-chip (50 micron) Deposited 2023-12-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CL CHLORIDE ION × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293.15 K；100mg/ml NaCl
|
Resolution 1.70 Å R-free 0.169 |
| 8REH Lysozyme measured via serial crystallography from a kapton HARE-chip (125 micron) Deposited 2023-12-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CL CHLORIDE ION × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293.15 K；100mg/ml NaCl
|
Resolution 1.70 Å R-free 0.175 |
| 8RGE Serial synchrotron in plate room temperature structure of Lysozyme. Deposited 2023-12-13 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；295 K；1M acetic acid pH 3, 5 % Peg 6000, 20 % NaCl
|
Resolution 1.88 Å R-free 0.231 |
| 8RLF Hydrogenated hen egg-white lysozyme at room temperature Deposited 2024-01-03 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 9 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.5；291 K；2 % NaNO3, 0.1 M Na acetate pH 4.5
|
Resolution 0.96 Å R-free 0.124 |
| 8RLG Perdeuterated hen egg-white lysozyme at room temperature Deposited 2024-01-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
18–147（130 aa）
|
Not recorded | NO3 NITRATE ION × 9 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；291 K；0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 1.07 Å R-free 0.129 |
| 8RLH Neutron structure of hydrogenated hen egg-white lysozyme at room temperature Deposited 2024-01-03 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 9 ACT ACETATE ION × 1 |
NEUTRON DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.5；291 K；2 % NaNO3, 0.1 M Na acetate pH 4.5
|
Resolution 1.10 Å R-free 0.234 |
| 8RLI Neutron structure of perdeuterated hen egg-white lysozyme at room temperature Deposited 2024-01-03 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
18–147（130 aa）
|
Not recorded | NO3 NITRATE ION × 8 ACT ACETATE ION × 1 |
NEUTRON DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.5；291 K；0.15 M sodium nitrate, 0.05 M sodium acetate pH 4.5
|
Resolution 0.91 Å R-free 0.247 |
| 8RNV Hen Egg White Lysozyme soaked with cis-Ru(DMSO)4Cl2 Deposited 2024-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 ACT ACETATE ION × 1 RU RUTHENIUM ION × 2 NA SODIUM ION × 3 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.8M NaCl, 0.05M acetate buffer
|
Resolution 1.08 Å R-free 0.167 |
| 8RNW Hen Egg White Lysozyme soaked with trans-Ru(DMSO)4Cl2 Deposited 2024-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 RU RUTHENIUM ION × 2 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.8 NaCl, 0.05 sodium acetate
|
Resolution 1.12 Å R-free 0.171 |
| 8RNX Hen Egg White Lysozyme soaked with [HIsq][trans-RuCl4(DMSO)(Isq)] Deposited 2024-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 NA SODIUM ION × 2 CL CHLORIDE ION × 3 RU RUTHENIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.8M NaCl, 0.05M sodium acetate
|
Resolution 1.25 Å R-free 0.248 |
| 8RNY Hen Egg White Lysozyme soaked with with [H2Ind][trans-RuCl4(DMSO)(HInd)] Deposited 2024-01-11 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 8 NA SODIUM ION × 3 RU RUTHENIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；0.8 NaCl, 0.05M sodium acetate
|
Resolution 1.02 Å R-free 0.144 |
| 8RPM Lysozyme structure based on automated real-time serial crystallography data processing using CrystFEL Deposited 2024-01-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；pH 3.5；295 K；Just in-time crystallization (JINXED): a lysozyme solution in acetate buffer (pH 3.5) was mixed with crystallization solution on a running conveyor belt using 3D printed micro nozzles. Crystallization solution: N,N',N'',N''',N'''',N'''''-Hexaacetyl chitohexaose in 33 mM acetate buffer, pH3.5, 6.67% (w/v) PEG4000, 2.07 M NaCl, 6.67% DMSO
|
Resolution 1.80 Å R-free 0.222 |
| 8RSH Lysozyme measured via serial crystallography from a silicon HARE chip Deposited 2024-01-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | ACT ACETATE ION × 1 CL CHLORIDE ION × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293.15 K；100mg/ml NaCl
|
Resolution 1.70 Å R-free 0.188 |
| 8RTJ X-ray structure of lysozyme obtained upon reaction with [VIVO(8-HQ)2] in ethylene glycol Deposited 2024-01-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 I3Y 2,2-bis($l^{1}-oxidanyl)-3-oxa-1$l^{4}-aza-2$l^{4}-vanadatricyclo[6.3.1.0^{4,12}]dodeca-1(12),4,6,8,10-pentaene × 1 V VANADIUM ION × 1 NO3 NITRATE ION × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；20% ethylene glycol, 0.6 M sodium nitrate,
0.1 M sodium acetate at pH 4.5
|
Resolution 1.27 Å R-free 0.197 |
| 8RTK X-ray structure of lysozyme obtained upon reaction with [VIVO(8-HQ)2] in sodium formate Deposited 2024-01-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 A1H23 2-$l^{1}-oxidanyl-2,2'-spirobi[3-oxa-1$l^{4}-aza-2$l^{7}-vanadatricyclo[6.3.1.0^{4,12}]dodeca-1(12),4,6,8,10-pentaene] 2-oxide × 1 VVO oxovanadium(2+) × 2 VVB bis(oxidanyl)vanadium × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate, 0.1 M Hepes at pH 7.5
|
Resolution 1.21 Å R-free 0.192 |
| 8RUS Hen egg-white lysozyme (HEWL) structure from EuXFEL FXE, multi-hit Droplet-on-Demand (DoD) injection, 9.3 keV photon energy, space group P432121 Deposited 2024-01-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 ACT ACETATE ION × 1 PEG DI(HYDROXYETHYL)ETHER × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3.5；298 K；1:2 lysozyme (100 mg mL-1 in 50 mM NaOAc (pH 3.5)) and crystallization solution (0.1 M NaOAc (pH 3.5), 5% PEG6000 (v/v), 3.2 M NaCl) at 298K.
|
Resolution 1.38 Å R-free 0.200 |
| 8S2U SSX structure of Lysozyme grown in batch conditions Deposited 2024-02-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；294 K；Protein dissolved in 20 mM sodium acetate pH 4.6
Protein and precipitant mixed in a 1:4 ratio
Precipitant solution: 6% PEG 6000 (w/v), 3.4M NaCl and 1M sodium acetate pH 3.0
|
Resolution 1.80 Å R-free 0.231 |
| 8S2V SSX structure of Lysozyme grown in microfluidic droplets Deposited 2024-02-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROFLUIDIC；pH 3；294 K；20 mg/mL Lysozyme dissolved in 20 mM sodium acetate pH 4.6
Precipitant: 6% PEG 6000 (W/V), 3.4M NaCl and 1M sodium acetate pH 3.0
|
Resolution 1.80 Å R-free 0.190 |
| 8SCY Lysozyme crystallized in cyclic olefin copolymer-based microfluidic chips Deposited 2023-04-05 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.6；277 K；2 M NaCl with 0.1 M sodium acetate buffer (pH 4.6)
|
Resolution 1.45 Å R-free 0.212 |
| 8SIL Lysozyme crystallized in cyclic olefin copolymer-based microfluidic chips Deposited 2023-04-16 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 4.6；277 K；2 M NaCl with 0.1 M sodium acetate buffer (pH 4.6)
|
Resolution 1.70 Å R-free 0.281 |
| 8W6K in situ room temperature Laue crystallography Deposited 2023-08-29 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；293 K；sodium acetate buffer, pH 4.55, and sodium chloride
|
Resolution 2.00 Å R-free 0.298 |
| 8WDI Crystal structure of lysozyme by fixed-target pink-beam serial synchrotron crystallography Deposited 2023-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；295 K；Na-acetate, NaCl, PEG8000
|
Resolution 2.20 Å R-free 0.299 |
| 8WZF Dark state SFX structure of hen egg white lysozyme microcrystals immobilized with a Mn carbonyl complex at RT. Deposited 2023-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；0.1M Acetate buffer (pH3.0), 28% NaCl
|
Resolution 1.60 Å R-free 0.226 |
| 8WZG SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 10 ns after photoexcitation at RT. Deposited 2023-11-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 4 XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å R-free 0.201 |
| 8WZR SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT. Deposited 2023-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å R-free 0.197 |
| 8WZT SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation at RT. Deposited 2023-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 2 XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å R-free 0.212 |
| 8WZV SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation with 40 microJoules laser intensity at RT. Deposited 2023-11-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 XTX tris($l^{3}-oxidanylidynemethyl)manganese × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；0.1M Acetate buffer (pH3.0), 28% NaCl, 8% PEG 6000
|
Resolution 1.60 Å R-free 0.191 |
| 8Y1R in situ room temperature Laue crystallography Deposited 2024-01-25 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；293 K；sodium acetate buffer, pH 4.55, and sodium chloride
|
Resolution 2.00 Å R-free 0.260 |
| 8Y1S in situ room temperature Laue crystallography Deposited 2024-01-25 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；290 K；Crystals were grown from NaCl as a crystallizing agent at pH 4.3
|
Resolution 1.52 Å |
| 8Y9W CRYSTAL STRUCTURE OF A LYSOZYME FROM HEN EGG WHITE Deposited 2024-02-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；300 K；0.1 M sodium acetate, 6% sodium chloride
|
Resolution 1.90 Å R-free 0.255 |
| 8YA1 HEN EGG WHITE LYSOZYME Deposited 2024-02-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；0.1 M sodium acetate, 6% sodium chloride
|
Resolution 1.57 Å R-free 0.213 |
| 8YA4 Crystal structure of a lysozyme form hen egg white Deposited 2024-02-07 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；300 K；0.1 M sodium acetate, 6% sodium chloride
|
Resolution 2.10 Å R-free 0.240 |
| 8YBG Crystal structure of lysozyme by serial synchrotron crystallography Deposited 2024-02-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；sodium acetate, sodium chloride, PEG 8000
|
Resolution 1.55 Å R-free 0.220 |
| 8YBH Crystal structure of lysozyme by macromolecular crystallography Deposited 2024-02-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；295 K；sodium acetate, sodium chloride, PEG 8000
|
Resolution 1.55 Å R-free 0.189 |
| 8Z51 Hen Egg-White Lysozyme (HEWL) complexed with Emetine Deposited 2024-04-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | 34G emetine × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；0.1M Na-acetate pH 4.5, 6.5 %(w/v) NaCl
|
Resolution 1.50 Å R-free 0.213 |
| 8Z52 Hen Egg-White Lysozyme (HEWL) complexed with Theophylline Deposited 2024-04-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | TEP THEOPHYLLINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.48 Å R-free 0.209 |
| 8ZST Lysozyme Crystallized with Bioassembler on Earth Deposited 2024-06-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NO3 NITRATE ION × 1 CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.8；294 K；SODIUM ACETATE 0.1M AT PH 4.8, NACL 13%, Gd(HP-D03A) 250mM, 294K
|
Resolution 0.80 Å R-free 0.133 |
| 8ZSU Lysozyme Crystallized with Bioassembler in Space Microgravity Deposited 2024-06-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GD GADOLINIUM ATOM × 2 DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID × 2 NO3 NITRATE ION × 1 CL CHLORIDE ION × 6 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.8；292 K；SODIUM ACETATE 0.1M AT PH 4.8, NACL 13%, Gd(HP-D03A) 250mM, 292K
|
Resolution 1.09 Å R-free 0.142 |
| 9B7C high-resolution ambient temperature structure of lysozyme soaked with sodium iodide Deposited 2024-03-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 2 NA SODIUM ION × 1 IOD IODIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；PEG4000, sodium citrate, 100 mM sodium iodide, glycerol
|
Resolution 1.10 Å R-free 0.123 |
| 9B7E S_SAD structure of HEWL using lossy compression data with a compression ratio of 422 Deposited 2024-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Mutation：None | EDO 1,2-ETHANEDIOL × 4 CL CHLORIDE ION × 8 NA SODIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；1000 mM NaCl
100 mM NaAcetate pH 4.6
50 mM Glycerol
50 mM Ethylen Glycol
Drop= 1 uL + 1uL
|
Resolution 1.65 Å R-free 0.200 |
| 9B7F S_SAD structure of HEWL using lossless default compression Deposited 2024-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Mutation：None | EDO 1,2-ETHANEDIOL × 4 CL CHLORIDE ION × 8 NA SODIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；1000 mM NaCl
100 mM NaAcetate pH 4.6
50 mM Glycerol
50 mM Ethylen Glycol
Drop= 1 uL + 1uL
|
Resolution 1.65 Å R-free 0.198 |
| 9C9H Interaction of chlorido(8-aminoquinoline)(pentamethylcyclopentadiene)rhodium(III) with HEWL Deposited 2024-06-14 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 ACY ACETIC ACID × 3 A1AVD Rh(pentamethylcyclopentadiene)(8-aminoquinoline)Cl × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.7；294 K；Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Rh(III)(pentamethylcyclopentadiene)(8-aminoquinoline)chlorido (0.98 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
|
Resolution 1.25 Å R-free 0.188 |
| 9ENZ X-ray structure of the adduct formed upon reaction of picoplatin with lysozyme (structure A) Deposited 2024-03-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 2 ACT ACETATE ION × 2 NH3 AMMONIA × 2 PT PLATINUM (II) ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；20% ethylene glycol, 0.6 M sodium nitrate and 0.1 sodium acetate pH 4.5
|
Resolution 1.60 Å R-free 0.230 |
| 9EO2 X-ray structure of the adduct formed upon reaction of picoplatin with lysozyme (structure B) Deposited 2024-03-14 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NO3 NITRATE ION × 3 GOL GLYCEROL × 1 ACT ACETATE ION × 4 PT PLATINUM (II) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；20% ethylene glycol, 0.6 M sodium nitrate and 0.1 sodium acetate pH 4.5
|
Resolution 1.36 Å R-free 0.208 |
| 9EVU HEN EGG-WHITE Lysozyme incubated at 99% relative humidity Deposited 2024-04-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.177 |
| 9EX0 X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure A) Deposited 2024-04-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 6 NA SODIUM ION × 2 A1ICR Polyoxidovanadate complex × 2 VO4 VANADATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.45 Å R-free 0.219 |
| 9EX1 X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure B) Deposited 2024-04-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 A1H8D Polyoxidovanadate complex × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.78 Å R-free 0.300 |
| 9EX2 X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2</sub>] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C) Deposited 2024-04-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 2 VO4 VANADATE ION × 6 A1H8D Polyoxidovanadate complex × 4 CL CHLORIDE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M NaCl, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.17 Å R-free 0.189 |
| 9FA5 Lysozyme structure at room temperature by serial synchrotron crystallography with COC chips Deposited 2024-05-10 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；295 K；6% (w/v) PEG 6000, 0.1 M sodium acetate pH 3.0, 20% (w/v) sodium chloride
|
Resolution 1.60 Å R-free 0.251 |
| 9FC3 HEN EGG-WHITE Lysozyme incubated at 99% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.181 |
| 9FC4 HEN EGG-WHITE Lysozyme incubated at 94% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.178 |
| 9FC5 HEN EGG-WHITE Lysozyme incubated at 99% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.179 |
| 9FC6 HEN EGG-WHITE Lysozyme incubated at 87% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.187 |
| 9FC7 HEN EGG-WHITE Lysozyme incubated at 99% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 6 CL CHLORIDE ION × 3 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.186 |
| 9FC8 HEN EGG-WHITE Lysozyme incubated at 60% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 6 CL CHLORIDE ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.194 |
| 9FC9 HEN EGG-WHITE Lysozyme incubated at 50% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 6 CL CHLORIDE ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.185 |
| 9FCA HEN EGG-WHITE Lysozyme incubated at 40% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 6 CL CHLORIDE ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.177 |
| 9FCB HEN EGG-WHITE Lysozyme incubated at 34% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 7 CL CHLORIDE ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 3.5；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.190 |
| 9FCC HEN EGG-WHITE Lysozyme incubated at 80% relative humidity Deposited 2024-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 1.40 Å R-free 0.184 |
| 9FGX Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody Deposited 2024-05-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain D
19–147（129 aa）
Chain F
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.53 Å |
| 9FGY Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody - Local refinement Deposited 2024-05-26 | Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
19–147（129 aa）
|
Not recorded | GOL GLYCEROL × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å |
| 9FUD Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - without ligand GlcNAc (apo) Deposited 2024-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；1 M sodium acetate pH 3.0, 20% (w/v) NaCl, 5% (w/v) PEG 6000
|
Resolution 2.05 Å R-free 0.252 |
| 9FUE Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - with ligand GlcNAc Deposited 2024-06-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；1 M sodium acetate pH 3.0, 20% (w/v) NaCl, 5% (w/v) PEG 6000
|
Resolution 2.05 Å R-free 0.265 |
| 9GCV Identification of chloride ions in lysozyme at long wavelengths Deposited 2024-08-02 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；294 K；100 mM sodium acetate pH 4.6, 1 M NaCl and 25% ethylene glycol
|
Resolution 2.70 Å R-free 0.217 |
| 9GHX Lysozyme covalently bound to fac-[Re(CO)3-imidazole] complex, incubated for 112 weeks. Data collection done at mammalian body temperature. Deposited 2024-08-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 VHL Tricarbonyl di(imidazole) rhenium(I) × 2 REI Tricarbonyl (aqua) (imidazole) rhenium(I) × 1 IMD IMIDAZOLE × 1 NA SODIUM ION × 1 RE RHENIUM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；290.15 K；HEWL, ReAA, Imidazole, 1.0 M NaCl, and 0.05 M sodium acetate at 4.5 pH.
|
Resolution 2.19 Å R-free 0.271 |
| 9GI7 Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-OH) polyoxometalate Deposited 2024-08-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1IMF hexavanadate (V6-OH) polyoxometalate × 1 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；293 K；1.0 M Lithium Chloride, 0.1 M Tris, 20% (w/v) PEG 6000,
|
Resolution 1.76 Å R-free 0.218 |
| 9GOG X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with furan-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide Deposited 2024-09-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 2 ACT ACETATE ION × 2 VVB bis(oxidanyl)vanadium × 1 A1IOM dioxidovanadium(V) complex with furan-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.24 Å R-free 0.256 |
| 9GOK X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with (E)-N'-(1-(2-hydroxy-5-methoxyphenyl)ethylidene)furan-2-carbohydrazide) Deposited 2024-09-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 ACT ACETATE ION × 2 CL CHLORIDE ION × 3 A1ION dioxidovanadium(V) complex with (E)-N'-(1-(2-hydroxy-5-methoxyphenyl)ethylidene)furan-2-carbohydrazide × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.18 Å R-free 0.221 |
| 9GYH HEW Lysozyme with His 15 functionalized with iodoacetamide Deposited 2024-10-02 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；0.05 M sodium acetate, 30% w/v PEG MME 5.000, 1.0 M sodium chloride
|
Resolution 1.60 Å R-free 0.211 |
| 9GYH HEW Lysozyme with His 15 functionalized with iodoacetamide Deposited 2024-10-02 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；293 K；0.05 M sodium acetate, 30% w/v PEG MME 5.000, 1.0 M sodium chloride
|
Resolution 1.60 Å R-free 0.211 |
| 9H3E Hen egg white lysozyme crystallization and structure determination at room temperature in the CrystalChip Deposited 2024-10-16 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION；pH 4.5；293 K；Protein crystallized by counter-diffusion in the CrystalChip, stock solution 60 mg/ml in 50 mM Na acetate pH 4.5, reservoir solution 2 M NaCl, 50 mM Na acetate pH 4.5
|
Resolution 1.50 Å R-free 0.177 |
| 9H7W Hen Egg White Lysozyme in Complex with Imidizole Deposited 2024-10-28 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | A1ISW 2H-imidazol-2-ol × 2 PEG DI(HYDROXYETHYL)ETHER × 1 EDO 1,2-ETHANEDIOL × 1 IMD IMIDAZOLE × 6 NA SODIUM ION × 2 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；30% PEG 6000, 1 M NaCl, 50 mM sodium acetate
|
Resolution 1.13 Å R-free 0.168 |
| 9HC2 Crystal structure of Lysozyme in complex with Gentisic Acid Deposited 2024-11-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | GTQ 2,5-dihydroxybenzoic acid × 2 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；100 mM tri-Sodium citrate pH 4.0, 800 mM Ammonium sulfate
|
Resolution 1.27 Å R-free 0.209 |
| 9HLK X-ray structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure A) Deposited 2024-12-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NH3 AMMONIA × 2 ACT ACETATE ION × 1 CL CHLORIDE ION × 1 PT PLATINUM (II) ION × 3 IOD IODIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；1.1 M sodium chloride
0.1 M sodium acetate buffer pH 4.5
|
Resolution 1.96 Å R-free 0.269 |
| 9HMK X-ray structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure B) Deposited 2024-12-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 3 IOD IODIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；0.8 M succinic acid pH 7.0
|
Resolution 1.48 Å R-free 0.259 |
| 9HMQ X-structure of the adduct formed upon reaction of the diiodido analogue of picoplatin with lysozyme (structure C) Deposited 2024-12-09 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | PT PLATINUM (II) ION × 4 NH3 AMMONIA × 4 IOD IODIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；2.0 M sodium formate and 0.1 Hepes buffer pH 7.5
|
Resolution 2.25 Å R-free 0.277 |
| 9HRU The Lysozyme - pctx complex in space group P3121 Deposited 2024-12-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：0 | A1IXG phosphated-cyclotrixylohydroquinoylene × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；1.6 M magnesium sulfate, 0.1 M MES pH 6.5
|
Resolution 1.88 Å R-free 0.224 |
| 9HRU The Lysozyme - pctx complex in space group P3121 Deposited 2024-12-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
19–147（129 aa）
|
Mutation：0 | A1IXG phosphated-cyclotrixylohydroquinoylene × 1 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；1.6 M magnesium sulfate, 0.1 M MES pH 6.5
|
Resolution 1.88 Å R-free 0.224 |
| 9HTI Adduct formed during the incubation of dichloro(3-benzylbenzoselenazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL Deposited 2024-12-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1IXJ [3-(phenylmethyl)-1,3-benzoselenazol-2-ylidene]ruthenium × 1 DMS DIMETHYL SULFOXIDE × 2 EDO 1,2-ETHANEDIOL × 2 ACT ACETATE ION × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；291.15 K；0.8M NaCl 0.1M NaOAc
|
Resolution 1.17 Å R-free 0.182 |
| 9HTJ Adduct formed during the incubation of dichloro(3-benzylbenzothiazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL Deposited 2024-12-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | DMS DIMETHYL SULFOXIDE × 2 A1IXK [3-(phenylmethyl)-1,3-benzothiazol-2-ylidene]ruthenium × 1 ACT ACETATE ION × 1 CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.6；291.15 K；0.8M NaCl 0.1M NaOAc
|
Resolution 1.49 Å R-free 0.187 |
| 9I6J Hen egg-white lysozyme structure embedded in LCP medium at 95% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.199 |
| 9I6K Hen egg-white lysozyme structure at 85% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.196 |
| 9I6L Hen egg-white lysozyme structure at 75% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.197 |
| 9I6M Hen egg-white lysozyme structure at 65% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 5 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.199 |
| 9I6N Hen egg-white lysozyme structure collected at EuXFEL SPB/SFX with HVE injection method Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 3 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.199 |
| 9I6O Hen egg-white lysozyme structure embedded in LCP medium at 95% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 3；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.199 |
| 9I6P Hen egg-white lysozyme structure embedded in LCP medium at 85% relative humidity Deposited 2025-01-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 8；297 K；20% NaCl, 6% PEG 6000, 0.1M sodium acetate pH 3.0
|
Resolution 1.70 Å R-free 0.196 |
| 9I8L X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2</sub>] at 310 K Deposited 2025-02-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 2 A1ICR Polyoxidovanadate complex × 2 A1H8D Polyoxidovanadate complex × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；310 K；1,1 M sodium chloride and 0,1 M sodium acetate buffer pH 4.0
|
Resolution 1.83 Å R-free 0.284 |
| 9IG6 Hen egg-white lysozyme structure determined by 3DED/MicroED on a 200 keV microscope Deposited 2025-02-19 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Mutation：none | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.7
cryo-EM vitrification conditions
Cryogen ETHANE；12 seconds
|
Resolution 2.80 Å R-free 0.326 |
| 9J0L Cryo-EM Structure of Lysozyme Type 1 Amyloid Fibrils Deposited 2024-08-02 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 31 PDB declaration: 36-meric |
Chain A
23–147（125 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.29 Å |
| 9J0M Cryo-EM Structure of Lysozyme Type 2 Amyloid Fibrils Deposited 2024-08-02 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 21 PDB declaration: 16-meric |
Chain A
23–147（125 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.21 Å |
| 9K9Z Room-temperature structure of lysozyme determined by serial synchrotron crystallography (MOSFLM) Deposited 2024-10-28 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.80 Å R-free 0.208 |
| 9KA0 Room-temperature structure of lysozyme determined by serial synchrotron crystallography (XGANDALF) Deposited 2024-10-28 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；Na-acetate, NaCl, PEG 8000
|
Resolution 1.80 Å R-free 0.190 |
| 9KJ7 Real-space refinement for the hen egg-white lysozyme structure Deposited 2024-11-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION；277.15 K；NaCl, Acetic-sodium acetate buffer
|
Resolution 1.30 Å R-free 0.209 |
| 9KOT HEWL crystal soaked in buffer of pH2.0 Deposited 2024-11-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；297 K；The concentration of the protein was 25 mg/ml. The precipitant solution in the reservoir was 100 mM sodium citrate/HCl buffer of pH 4.3 containing 1.2 M sodium chloride.
|
Resolution 1.50 Å R-free 0.227 |
| 9L1L Structure of anti-HEL AiTab Deposited 2024-12-15 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 5 PDB declaration: pentameric |
Chain P
68–81（14 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 3.09 Å |
| 9L71 HEWL crystal soaked in buffer of pH12.0 Deposited 2024-12-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；297 K；The concentration of the protein was 25 mg/ml. The precipitant solution in the reservoir was 100 mM sodium citrate/HCl buffer of pH 4.3 containing 1.2 M sodium chloride.
|
Resolution 2.00 Å R-free 0.241 |
| 9L9R Room-temperature structure of lysozyme determined by serial synchrotron crystallography Deposited 2024-12-31 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, NaCl, PEG8000
|
Resolution 1.45 Å R-free 0.194 |
| 9LMK Room temperature structure of lysozyme by serial synchrotron crystallography (XDS) Deposited 2025-01-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；295.5 K；Na-acetate, PEG 8000, NaCl
|
Resolution 1.50 Å R-free 0.214 |
| 9LML Room temperature structure of lysozyme by serial synchrotron crystallography (MOSFLM) Deposited 2025-01-19 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；295.5 K；Na-acetate, PEG 8000, NaCl
|
Resolution 1.60 Å R-free 0.199 |
| 9LYZ X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME Deposited 1979-12-06 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.50 Å |
| 9MP3 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000
|
Resolution 1.30 Å R-free 0.224 |
| 9MP4 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (8 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.82 Å R-free 0.221 |
| 9MP5 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (50 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.97 Å R-free 0.257 |
| 9MP6 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (150 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 2.22 Å R-free 0.252 |
| 9MP7 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (300 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 2.15 Å R-free 0.245 |
| 9MP8 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (750 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.83 Å R-free 0.208 |
| 9MP9 Mix & Quench Time Resolved Lysozyme - NAG1 Complex (1000 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.90 Å R-free 0.220 |
| 9MPA Mix & Quench Time Resolved Lysozyme - NAG1 Complex (2000 ms) Deposited 2024-12-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 CL CHLORIDE ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；pH 4.6；293 K；0.1 M sodium acetate pH 4.6, 20 % (w/v) sodium chloride, 5 % PEG 4000. NAG1 soaked at 226 mM in 0.1 M sodium acetate pH 4.6 and 17.5 % (w/v) sodium chloride, 5 % (w/v) PEG 4000, and 10 % (w/v) PEG 400
|
Resolution 1.85 Å R-free 0.239 |
| 9ORV X-ray diffraction structure of lysozyme co-crystallized with N,N',N"-triacetylchitotriose Deposited 2025-05-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.60 Å R-free 0.210 |
| 9ORW X-ray diffraction structure of apo-form lysozyme Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.50 Å R-free 0.218 |
| 9ORX X-ray diffraction structure of lysozyme complexed with N,N',N"-triacetylchitotriose from a cocktail-soaked crystal Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.50 Å R-free 0.234 |
| 9ORY X-ray diffraction structure of lysozyme soaked with N,N',N"-triacetylchitotriose Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；800 mM NaCl, 80 mM sodium acetate pH 4.8
|
Resolution 1.40 Å R-free 0.215 |
| 9ORZ MicroED structure of apo-form lysozyme Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8；800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å R-free 0.250 |
| 9OS0 MicroED structure of lysozyme complexed with N,N',N"-triacetylchitotriose from cocktail-soaked crystals Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8；800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.40 Å R-free 0.256 |
| 9OS1 MicroED structure of lysozyme co-crystallized with N,N',N"-triacetylchitotriose Deposited 2025-05-23 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8；800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å R-free 0.264 |
| 9OS8 MicroED structure of lysozyme soaked with N,N',N"-triacetylchitotriose Deposited 2025-05-23 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | No recorded non-water small molecule |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8；800 mM NaCl, 80 mM sodium acetate pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å R-free 0.269 |
| 9OZ5 Gradient equilibration of tetragonal lysozyme from 8% NaCl to 3% NaCl over 40 minutes Deposited 2025-06-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；8% NaCl, 20 mM NaOAc pH 5.2
|
Resolution 1.30 Å R-free 0.175 |
| 9P12 Lysozyme Room-Temperature In-Situ, Shipped Deposited 2025-06-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；295 K；0.78 M sodium chloride, 0.1 M sodium acetate
|
Resolution 1.57 Å R-free 0.203 |
| 9P13 Lysozyme Room-Temperature In-Situ, Grown On-Site Deposited 2025-06-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；295 K；0.78 M sodium chloride, 0.1 M sodium acetate
|
Resolution 1.73 Å R-free 0.205 |
| 9P6R Structure of lysozyme-N,N',N"-triacetylchitotriose complex determined using REyes for automated MicroED Deposited 2025-06-19 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
Fragment：lyzozyme
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.20 Å R-free 0.276 |
| 9QSQ Mn(III)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Deposited 2025-04-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1JAD Manganese substituted Wells-Dawson polyoxometalate × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；291 K；1M LiCL, 0.1 M Citric acid, 10% (w/v) PEG6000, pH 4.0
|
Resolution 1.87 Å R-free 0.246 |
| 9QTL SFX crystal structure of hen egg-white lysozyme (HEWL) using a guanosine derivative hydrogel as crystal matrix Deposited 2025-04-09 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 4.6；293.15 K；0,5 M Na-Acetate, 18 % w/v NaCl, 6 % w/v PEG 6K, pH 4.6
|
Resolution 1.75 Å R-free 0.220 |
| 9QUM Structure of lysozyme by continuous serial electron diffraction (SerialED) Deposited 2025-04-10 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–147（147 aa）
|
Not recorded | ACT ACETATE ION × 1 CL CHLORIDE ION × 3 |
ELECTRON CRYSTALLOGRAPHY
cryo-EM buffer
pH 4.5；Crystals were produced by adding 1 part of lysozyme solution (40 mg/mL) to 1 part of precipitant (0.8 M NaNO3, 50mM NaAc, pH 4.5)
cryo-EM vitrification conditions
Cryogen ETHANE；Manual blotting in room temperature with ambient humidity
|
Resolution 0.83 Å R-free 0.206 |
| 9RBG X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure A) Deposited 2025-05-26 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 DVT DECAVANADATE × 1 A1JFD 2-[(4~{S})-1,1,6,6-tetrakis(oxidanyl)-3-oxidanylidene-2,5$l^{3},7-trioxa-1$l^{5},6$l^{4}-divanadabicyclo[3.2.0]heptan-4-yl]ethanoic acid × 1 VVO oxovanadium(2+) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.46 Å R-free 0.312 |
| 9RBT X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure B) Deposited 2025-05-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 ACT ACETATE ION × 2 DVT DECAVANADATE × 1 A1JFD 2-[(4~{S})-1,1,6,6-tetrakis(oxidanyl)-3-oxidanylidene-2,5$l^{3},7-trioxa-1$l^{5},6$l^{4}-divanadabicyclo[3.2.0]heptan-4-yl]ethanoic acid × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；293 K；1.1 M sodium chloride, 0.1 M sodium acetate pH 4.0
|
Resolution 1.18 Å R-free 0.235 |
| 9RBV X-ray structure of lysozyme when is treated with Cs2[V(V)2O4(mal)2]2H2O at 310K Deposited 2025-05-27 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 NA SODIUM ION × 1 VVO oxovanadium(2+) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4；310 K；1.1 M sodium chloride and 0.1 M sodium acetate pH 4.0
|
Resolution 2.09 Å R-free 0.293 |
| 9RUV X-ray structure of the adduct formed upon reaction of dirhodium-tetraacetate with lysozyme at body temperature Deposited 2025-07-05 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | RH Rhodium × 7 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；310 K；2.0 M sodium formate, 0.1 M hepes buffer pH 7.5
|
Resolution 2.12 Å R-free 0.261 |
| 9RV6 5 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography. Deposited 2025-07-07 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；50mg/ml hewl, 22.4% (w/v) NaCl, 6.4% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.55 Å R-free 0.214 |
| 9RVI 10 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography. Deposited 2025-07-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；19.6% (w/v) NaCl, 5.6% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.47 Å R-free 0.172 |
| 9RVO 25 micrometer HEWL crystals solved at room-temperature using fixed-target serial crystallography. Deposited 2025-07-08 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；293 K；50mg/ml hewl, 22.4% (w/v) NaCl, 6.4% (w/v) PEG 6000, 0.1 M NaAc pH 3.0
|
Resolution 1.33 Å R-free 0.168 |
| 9RZR Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Hex) polyoxometalate Deposited 2025-07-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1JKF Hexavanadate (V6-Hex) polyoxometalate × 2 MLI MALONATE ION × 3 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；291 K；1.5M Sodium Malonate
|
Resolution 1.27 Å R-free 0.163 |
| 9RZS Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-N3) polyoxometalate Deposited 2025-07-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1JKB Hexavanadate (V6-N3) polyoxometalate × 1 CL CHLORIDE ION × 3 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；291 K；1.0M LiCl, 0.1M Citric acid, 10%(w/v) PEG 6000
|
Resolution 1.68 Å R-free 0.229 |
| 9RZT Hen Egg-White Lysozyme (HEWL) complexed with a Lindqvist-type hexavanadate (V6-Man) polyoxometalate Deposited 2025-07-16 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | A1JKC Hexavanadate (V6-Man) polyoxometalate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；291 K；1.0M LiCl, 0.1M Tris, 10%(w/v) PEG 6000
|
Resolution 1.73 Å R-free 0.235 |
| 9S2A X-ray structure of lysozyme obtained upon reaction with the dioxidovanadium(V) complex with thiophene-2-carboxylic acid (3-ethoxy-2-hydroxybenzylidene)hydrazide Deposited 2025-07-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain AAA
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 A1JLF 13-ethoxy-5-thiophen-2-yl-2,4$l^{3}-dioxa-6,7$l^{4}-diaza-3$l^{7}-vanadatricyclo[7.4.0.0^{3,7}]trideca-1(9),4,7,10,12-pentaene 3,3-dioxide × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；1.1 M sodium chloride, 0.1 M sodium acetate at pH 4.0
|
Resolution 1.37 Å R-free 0.233 |
| 9TBL SSX Lysozyme at 100K Deposited 2025-11-20 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 9 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；293 K；19.04% NaCl, 5.44% PEG 8,000, 68mM Na Acetate pH 3.0
|
Resolution 1.75 Å R-free 0.211 |
| 9TEJ Lysozyme crystal structure by beam sweeping serial crystallography with pink beam Deposited 2025-11-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；1M NaCl, 35% (v/v) ethylene glycol, 20% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 2.10 Å R-free 0.265 |
| 9TEK Lysozyme crystal structure by beam sweeping serial crystallography Deposited 2025-11-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；296 K；1M NaCl, 40% (v/v) ethylene glycol, 15% (w/v) PEG4000, 50 mM sodium acetate pH 3.5
|
Resolution 2.00 Å R-free 0.256 |
| 9UGI Room temperature structure of lysozyme by serial synchrotron crystallography Deposited 2025-04-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
SMALL TUBES；293.5 K；sodium acetate, NaCl, PEG 8000
|
Resolution 1.80 Å R-free 0.202 |
| 9UYR In situ structure of egg-white lysozyme using a goniometer-compatible chip-based platform Deposited 2025-05-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；40mg/mL in 50mM sodium acetate, 0.8M NaCl
|
Resolution 1.59 Å R-free 0.194 |
| 9V3D SFX structure of 3-5 micrometers Lysozyme microcrystals Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；290 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å R-free 0.225 |
| 9V3G SFX structure of 1 micrometer Lysozyme microcrystals Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 1 CL CHLORIDE ION × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.74 Å R-free 0.201 |
| 9V3H Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 2 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；290 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å R-free 0.227 |
| 9V3I Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 5 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；290 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å R-free 0.225 |
| 9V3J Time-Resolved mixing crystallography structure of 3-5 micrometers Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 9.7 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；290 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.68 Å R-free 0.223 |
| 9V3K Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 1.3 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.72 Å R-free 0.206 |
| 9V3L Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 5.0 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.75 Å R-free 0.197 |
| 9V3M Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 7.5 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.77 Å R-free 0.219 |
| 9V3N Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 226 mM N-Acetyl-D-glucosamine at 9.7 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.78 Å R-free 0.189 |
| 9V3O Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 1.3 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.80 Å R-free 0.206 |
| 9V3P Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 2.5 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.81 Å R-free 0.221 |
| 9V3Q Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 4 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.80 Å R-free 0.215 |
| 9V3R Time-Resolved mixing crystallography structure of 1 micrometer Lysozyme microcrystals with 452 mM N-Acetyl-D-glucosamine at 5.0 seconds delay Deposited 2025-05-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 2 NA SODIUM ION × 1 NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 3；285 K；8% PEG 6000, 4.8 M NaCl, and 0.1M sodium acetate
|
Resolution 1.82 Å R-free 0.193 |
| 9WKS Crystal structure of hen egg-white lysozyme determined in the commissioning of NanoTerasu MX-ES Deposited 2025-09-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
19–147（129 aa）
|
Not recorded | CL CHLORIDE ION × 4 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.2；293 K；50mM sodium acetate, 1M NaCl
|
Resolution 1.20 Å R-free 0.170 |
| 9XUA Hen Egg-White Lysozyme (HEWL) complexed with Caffeine Deposited 2025-11-24 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
19–147（129 aa）
|
Not recorded | NA SODIUM ION × 8 CFF CAFFEINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；0.1M Na-acetate pH 4.5, 6.5% (w/v) NaCl
|
Resolution 1.40 Å R-free 0.179 |
1320 other PDB entries and 1450 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | LYSC_CHICK |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–129； UniProt 19–147 |
