SAXSdb — 1eah

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1. Structure Basics

entry_id	1eah
deposition_date	1997-07-22
title	PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973
keywords	TYPE 2, LANSING, ANTIVIRAL, PICORNAVIRUS, MOUSE NEUROVIRULENCE, COAT PROTEIN, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.98 Å
rg_electron	28.94 Å
i0	138370000.00
molecular_weight	93086.0 kDa
excluded_volume	116290 Å³
envelope_volume	145000 Å³
shell_volume	40739 Å³
envelope_diameter	103.1 Å
shell_rg	37.08 Å
envelope_rg	29.56 Å
shape_rg	28.93 Å
total_rg	29.71 Å
total_atoms	6552
n_residues	837
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	93.5 Å
rg_real	29.90 Å
rg_real_error	0.54 Å
i0_real	1.3840e+08
i0_real_error	1.9710e+06
rg_reciprocal	29.93 Å
i0_reciprocal	138400000.0000
total_estimate	0.6777
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	35.3 Å
skewness	0.281
kurtosis	-0.377
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	23760000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.928; Stabil: 1.000; Sysdev: 0.050; Positv: 1.000; Valcen: 0.996; Smooth: 0.873

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
formula_weight	33039.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1
atom_count	6823

GLGDLIEGVVEGVTRNALTPLTPANNLPDTQSSGPAHSKETPALTAVETGATNPLVPSDTVQTRHVIQKRTRSESTVESFFARGACVAIIEVDNDAPTKRASKLFSVWKITYKDTVQLRRKLEFFTYSRFDMEFTFVVTSNYTDANNGHALNQVYQIMYIPPGAPIPGKWNDYTWQTSSNPSVFYTYGAPPARISVPYVGIANAYSHFYDGFAKVPLAGQASTEGDSLYGAASLNDFGSLAVRVVNDHNPTKLTSKIRVYMKPKHVRVWCPRPPRAVPYYGPGVDYKDGLAPLPGKGLTTY

Source

organism	Human poliovirus 2
ncbi_taxonomy_id	12083
host_organism	Homo sapiens

Entity 2 polymer

description	POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
formula_weight	29980.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

SPNIEACGYSVRVMQLTLGNSTITTQEAANSVVAYGRWPEYIKDSEANPVDQPTEPDVAACRFYTLDTVTWRKESRGWWWKLPDALKDMGLFGQNMFYHYLGRAGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSTTHMFTKYENANPGEKGGEFKGSFTLDTNATNPARNFCPVDYLFGSGVLAGNAFVYPHQIINLRTNNCATLVLPYVNSLSIDSMTKHNNWGIAILPLAPLDFATESSTEIPITLTIAPMCCEFNGLRNITVPRTQ

Source

organism	Human poliovirus 2
ncbi_taxonomy_id	12083
host_organism	Homo sapiens

Entity 3 polymer

description	POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
formula_weight	26472.3 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPVLNTPGSNQYLTADNYQSPCAIPEFDVTPPIDIPGEVRNMMELAEIDTMIPLNLTNQRKNTMDMYRVELNDAAHSDTPILCLSLSPASDPRLAHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGAEAPKSRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTINDSFTEGGYISMFYQTRVVVPLSTPRKMDILGFVSACNDFSVRLLRDTTHISQEAMPQ

Source

organism	Human poliovirus 2
ncbi_taxonomy_id	12083
host_organism	Homo sapiens

Entity 4 polymer

description	POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
formula_weight	7347.0 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFAQDPSKFTEPIKDVLIKTAPTLN

Source

organism	Human poliovirus 2
ncbi_taxonomy_id	12083
host_organism	Homo sapiens

Entity 5 non-polymer

description	1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE
formula_weight	423.7 kDa
src_method	syn
entity_count	1

Entity 6 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	271

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6. Citations (6)

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length_a	345.700 Å
length_b	497.200 Å
length_c	485.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	240

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.900 Å
resolution_low	— Å
r_factor	0.1850
r_work	0.1850
r_free	—

fit	/app/data/saxs_computation/ea/1eah/1eah.fit
pddf	/app/data/pr_computation/ea/1eah/1eah.pr.out
profile	/app/data/saxs_computation/ea/1eah/1eah.dat

PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 water

6. Citations (6)

7. Files & Curves (10)

Files (7)

Curves (3)