1fqk

CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]

Method: X-RAY DIFFRACTION Dmax: 115.0 Å Quality: REASONABLE

1. 蛋白身份与相关结构 Protein Identity & Related Structures

;Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 ;

Bos taurus

UniProt P04695

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 A; UniProt 26–215 链 A; UniProt 295–350 片段:UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 Regulator of G-protein signaling 9 × 1 (O46469) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268
2 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 C; UniProt 26–215 链 C; UniProt 295–350 片段:UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 Regulator of G-protein signaling 9 × 1 (O46469) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 16 个其他 PDB 条目、28 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 GNAT1_BOVIN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–190; UniProt 26–215 作者链 A; PDB构建体 270–325; UniProt 295–350 作者链 C; PDB构建体 1–190; UniProt 26–215 作者链 C; PDB构建体 270–325; UniProt 295–350

;Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 ;

Bos taurus

UniProt P10824

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 A; UniProt 220–298 片段:UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 Regulator of G-protein signaling 9 × 1 (O46469) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268
2 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 C; UniProt 220–298 片段:UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 Regulator of G-protein signaling 9 × 1 (O46469) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 43 个其他 PDB 条目、56 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 GNAI1_RAT
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 191–269; UniProt 220–298 作者链 C; PDB构建体 191–269; UniProt 220–298

Regulator of G-protein signaling 9

Bos taurus

UniProt O46469

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 B; UniProt 276–422 片段:RGS DOMAIN, UNP RESIDUES 276-422 ;Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 ; × 1 (P04695,P10824) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268
2 信息不足 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 D; UniProt 276–422 片段:RGS DOMAIN, UNP RESIDUES 276-422 ;Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 ; × 1 (P04695,P10824) MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;10.5% PEG8000, 110mM magnesium acetate, 50mM Tris pH 8.5, 0.2% beta-ME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 分辨率 2.30 Å R-free 0.268

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 2 个其他 PDB 条目、3 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RGS9_BOVIN
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–147; UniProt 276–422 作者链 D; PDB构建体 1–147; UniProt 276–422

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 1fqk

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1fqk
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1fqk
沉积日期 deposition_date2000-09-05
结构标题 titleCRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, AND THE GT/I1 CHIMERA ALPHA SUBUNIT [(RGS9)-(GT/I1ALPHA)-(GDP)-(ALF4-)-(MG2+)]
关键词 keywordsRGS9, transducin, G Protein, Phototransduction, rod, RGS, GAP, SIGNALING PROTEIN; SIGNALING PROTEIN
实验方法 methodX-RAY DIFFRACTION

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier33.83
回转半径 Rg (电子) rg_electron33.78
零角强度 I(0) i0176464000.00
分子量 molecular_weight107180.0 kDa
排除体积 excluded_volume134410 ų
包络体积 envelope_volume175770 ų
水化壳体积 shell_volume43894 ų
包络直径 envelope_diameter125.9
壳层 Rg shell_rg39.93
包络 Rg envelope_rg33.82
形状 Rg shape_rg33.79
总 Rg total_rg34.18
总原子数 total_atoms7518
残基数 n_residues914
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax115.0
Rg (实空间) rg_real33.91
Rg 误差 (实空间) rg_real_error0.95
I(0) (实空间) i0_real1.7650e+08
I(0) 误差 (实空间) i0_real_error2.8690e+06
Rg (倒空间) rg_reciprocal33.86
I(0) (倒空间) i0_reciprocal176500000.0000
解质量估计 total_estimate0.6879
解质量评级 solution_quality REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary36.7
偏度 Skewness skewness0.436
峰度 Kurtosis kurtosis-0.297
角度范围 angular_range— – 0.2350 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha30620000.0000
实空间数据点数 n_real_points48
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.818; Stabil: 1.000; Sysdev: 0.214; Positv: 1.000; Valcen: 0.930; Smooth: 0.912

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (6)

7. 折叠分类 (SCOP + CATH) 14 domains

SCOP 2.08 (6 domains)

结构域编号 domain_idd1fqka1
类 Class classa — All alpha proteins
折叠类型 Fold folda.66 — Transducin (alpha subunit), insertion domain
超家族 Superfamily superfamilya.66.1 — Transducin (alpha subunit), insertion domain
家族 Family familya.66.1.1 — Transducin (alpha subunit), insertion domain
结构域编号 domain_idd1fqka2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.8 — G proteins
结构域编号 domain_idd1fqkb_
类 Class classa — All alpha proteins
折叠类型 Fold folda.91 — Regulator of G-protein signaling, RGS
超家族 Superfamily superfamilya.91.1 — Regulator of G-protein signaling, RGS
家族 Family familya.91.1.1 — Regulator of G-protein signaling, RGS
结构域编号 domain_idd1fqkc1
类 Class classa — All alpha proteins
折叠类型 Fold folda.66 — Transducin (alpha subunit), insertion domain
超家族 Superfamily superfamilya.66.1 — Transducin (alpha subunit), insertion domain
家族 Family familya.66.1.1 — Transducin (alpha subunit), insertion domain
结构域编号 domain_idd1fqkc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.8 — G proteins
结构域编号 domain_idd1fqkd_
类 Class classa — All alpha proteins
折叠类型 Fold folda.91 — Regulator of G-protein signaling, RGS
超家族 Superfamily superfamilya.91.1 — Regulator of G-protein signaling, RGS
家族 Family familya.91.1.1 — Regulator of G-protein signaling, RGS

CATH v4.4 (8 domains)

结构域编号 domain_id1fqkA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1fqkA02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology400 — GI Alpha 1, domain 2-like
同源超家族 H-superfamily homologous superfamily10 — GI Alpha 1, domain 2-like
结构域编号 domain_id1fqkB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology196 — Regulator of G-protein Signalling 4; domain 1
同源超家族 H-superfamily homologous superfamily10
结构域编号 domain_id1fqkB02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology167 — Regulator of G-protein Signalling 4; domain 2
同源超家族 H-superfamily homologous superfamily10 — Regulator of G-protein Signalling 4, domain 2
结构域编号 domain_id1fqkC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1fqkC02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology400 — GI Alpha 1, domain 2-like
同源超家族 H-superfamily homologous superfamily10 — GI Alpha 1, domain 2-like
结构域编号 domain_id1fqkD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology196 — Regulator of G-protein Signalling 4; domain 1
同源超家族 H-superfamily homologous superfamily10
结构域编号 domain_id1fqkD02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology167 — Regulator of G-protein Signalling 4; domain 2
同源超家族 H-superfamily homologous superfamily10 — Regulator of G-protein Signalling 4, domain 2

8. 引用文献 (1)

9. 文件与曲线 (10)