|
1GU4
Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment
提交 2002-01-23
|
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
259–336(78 aa)
片段:BZIP DOMAIN, RESIDUES 259-336
链 B
259–336(78 aa)
片段:BZIP DOMAIN, RESIDUES 259-336
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
pH 6;0.2 M POTASSIUM CHLORIDE, 0.01 M MAGNESIUM SULFATE, 10.0% V/V PEG 400, 0.05 M MES BUFFER PH 6.0, PROTEIN-DNA COMPLEX CONCENTRATION WAS 12 MG/ML AND CONTAINS 0.01 M DTT, PROTEIN:DNA RATIO WAS 1:1.2. FOR CRYOPROTECTION THE CONCENTRATION OF PEG 400 WAS ADJUSTED TO 36% V/V
|
分辨率 1.80 Å
R-free 0.266
|
|
1GU5
Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter
提交 2002-01-24
|
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
259–336(78 aa)
片段:BZIP DOMAIN, RESIDUES 259-336
链 B
259–336(78 aa)
片段:BZIP DOMAIN, RESIDUES 259-336
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
pH 6.5;0.08 M MAGNESIUM ACETATE, 15.0% V/V PEG 400, 0.05 M SODIUM CACODYLATE BUFFER PH 6.5, PROTEIN-DNA COMPLEX CONCENTRATION WAS 12 MG/ML WITH ADDITION OF 0.01 M DTT, PROTEIN:DNA RATIO WAS 1:1.2 FOR CRYOPROTECTION THE CONCENTRATION OF PEG 400 WAS ADJUSTED TO 36% V/V
|
分辨率 2.10 Å
R-free 0.277
|
|
1H88
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
提交 2001-01-29
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
异源复合物;蛋白 × 3
PDB 声明:pentameric
|
链 A
259–336(78 aa)
片段:RESIDUES 259-336
链 B
259–336(78 aa)
片段:RESIDUES 259-336
|
未记录
|
NH4 AMMONIUM ION × 1
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 7.5;297 K;0.05 M AMMONIUM ACETATE, 0.01 M MAGNESIUM CHLORIDE, 10% V/V MPD, 6% V/V GLYCEROL, 0.05 M TRIS HCL BUFFER PH 7.5 AT 24 DEGREES C
|
分辨率 2.80 Å
R-free 0.277
|
|
1H89
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
提交 2001-01-30
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
异源复合物;蛋白 × 3
PDB 声明:pentameric
|
链 A
273–336(64 aa)
片段:RESIDUES 273-336
链 B
273–336(64 aa)
片段:RESIDUES 273-336
|
未记录
|
K POTASSIUM ION × 2
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 7;297 K;0.1 M KCL, 0.05 MGSO4, 4% V/V MPD, 6% V/V GLYCEROL, 0.05 M NA HEPES PH 7.0 AT 24 DEGREES C
|
分辨率 2.45 Å
R-free 0.267
|
|
1H8A
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
提交 2001-01-31
|
构建体不同
聚集状态不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
异源复合物;蛋白 × 3
PDB 声明:pentameric
|
链 A
259–336(78 aa)
片段:RESIDUES 259-336
链 B
259–336(78 aa)
片段:RESIDUES 259-336
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 6;297 K;0.04 M MAGNESIUM CHLORIDE, 20% V/V MPD, 0.05 M SODIUM CACODYLATE BUFFER PH 6.0 AT 24 DEGREES C
|
分辨率 2.23 Å
R-free 0.288
|
|
1HJB
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
提交 2001-01-11
|
构建体不同
聚集状态不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
异源复合物;蛋白 × 3
PDB 声明:pentameric
|
链 A
259–345(87 aa)
片段:RESIDUES 259-345
链 B
259–345(87 aa)
片段:RESIDUES 259-345
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 5.6;297 K;5 MM MGSO4, 3% W/V PEG 4000, 1% V/V DIOXANE, 50 MM MES BUFFER, PH 5.6 AT 24 DEGREES C
|
分辨率 3.00 Å
R-free 0.313
|
|
1HJB
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
提交 2001-01-11
|
构建体不同
聚集状态不同
实验环境不同
结构质量不同
|
Assembly 2
蛋白–DNA
异源复合物;蛋白 × 3
PDB 声明:pentameric
|
链 D
259–345(87 aa)
片段:RESIDUES 259-345
链 E
259–345(87 aa)
片段:RESIDUES 259-345
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 5.6;297 K;5 MM MGSO4, 3% W/V PEG 4000, 1% V/V DIOXANE, 50 MM MES BUFFER, PH 5.6 AT 24 DEGREES C
|
分辨率 3.00 Å
R-free 0.313
|
|
1IO4
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
提交 2001-01-10
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
异源复合物;蛋白 × 4
PDB 声明:hexameric
|
链 A
259–336(78 aa)
片段:BZIP DOMAIN
链 B
259–336(78 aa)
片段:BZIP DOMAIN
|
未记录
|
AU GOLD ION × 3
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 5.6;297 K;0.2 M potassium chloride, 0.01 M magnesium chloride, 0.01 M DTT, 4.5% V/V PEG 8000, 1% V/V glycerol, 1% V/V MPD, 0.05 M MES buffer pH 5.6, pH 5.60, VAPOR DIFFUSION, SITTING DROP, temperature 297K
|
分辨率 3.00 Å
R-free 0.299
|
|
2E42
Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment
提交 2006-12-01
|
构建体不同
突变/修饰不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
259–336(78 aa)
片段:residues 259-336
链 B
259–336(78 aa)
片段:residues 259-336
|
突变:V285A
突变:V285A
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
pH 6;magnesium chloride, MES, PEG400, PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
|
分辨率 1.80 Å
R-free 0.252
|
|
2E43
Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment
提交 2006-12-01
|
构建体不同
突变/修饰不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
259–336(78 aa)
片段:residues 259-336
链 B
259–336(78 aa)
片段:residues 259-336
|
突变:K269A
突变:K269A
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
pH 7.5;magnesium chloride, Tris-Hcl, PEG4000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
|
分辨率 2.10 Å
R-free 0.259
|
|
6MG1
C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2 Crystal Form
提交 2018-09-12
|
构建体不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
246–321(76 aa)
链 B
246–321(76 aa)
|
未记录
|
EDO 1,2-ETHANEDIOL × 4
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 6.5;292 K;0.2 M sodium chloride, 0.1 M BIS-TRIS pH 6.5, 25% (w/v) polyethylene glycol 3350
|
分辨率 1.75 Å
R-free 0.250
|
|
6MG2
C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2221 Crystal Form
提交 2018-09-12
|
构建体不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
246–321(76 aa)
链 B
246–321(76 aa)
|
未记录
|
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 7;292 K;0.1 M sodium acetate trihydrate pH 7.0, 12% (w/v) polyethylene glycol 3350
|
分辨率 1.93 Å
R-free 0.210
|
|
6MG3
V285A Mutant of the C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence
提交 2018-09-12
|
构建体不同
突变/修饰不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
246–321(76 aa)
链 B
246–321(76 aa)
|
突变:V285A
突变:V285A
|
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 7;292 K;0.1 M sodium acetate trihydrate pH 7.0, 12% (w/v) polyethylene glycol 3350
|
分辨率 2.05 Å
R-free 0.249
|
|
7L4V
C-terminal bZIP domain of human C/EBPbeta Bound to DNA with Consensus Recognition with GT Mismatch
提交 2020-12-21
|
构建体不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
246–321(76 aa)
链 B
246–321(76 aa)
|
未记录
|
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;pH 6.5;292 K;50 mM ammonium sulfate, 50 mM BIS-TRIS pH 6.5, 30% (v/v) pentaerythritol ethoxylate (15/4 EO/OH)
|
分辨率 1.75 Å
R-free 0.221
|
|
7UPZ
Structural basis for cell type specific DNA binding of C/EBPbeta: the case of cell cycle inhibitor p15INK4b promoter
提交 2022-04-18
|
构建体不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
257–336(80 aa)
片段:UNP residues 257-336
链 B
257–336(80 aa)
片段:UNP residues 257-336
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, HANGING DROP;pH 6;291 K;100 mM potassium chloride, 10 mM magnesium chloride, 50 mM MES, pH 6.0, 10% v/v PEG400, 5% v/v glycerol
|
分辨率 2.49 Å
R-free 0.264
|
|
8K8D
Crystal structure of C/EBPbeta BZIP domain bound to a high affinity DNA
提交 2023-07-29
|
构建体不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–DNA
同源多聚体;蛋白 × 2
PDB 声明:tetrameric
|
链 A
259–336(78 aa)
链 B
259–336(78 aa)
|
未记录
|
未记录非水小分子
|
X-RAY DIFFRACTION
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP;291 K;0.02 M Calcium chloride dihydrate,0.1 M Sodium acetate trihydrate pH 4.6 and 20% v/v 2-Propanol
|
分辨率 2.20 Å
R-free 0.292
|