|
10DC
H-Ras GTPase R68A bound to GppNHp
Deposited 2026-01-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:R68A
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291.15 K;0.2 M Calcium Acetate, 20% w/v PEG 3350, 0.1% N-octyl glucopyranoside
|
Resolution 2.08 Å
R-free 0.215
|
|
121P
STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES C-TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.54 Å
|
|
1AA9
HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Deposited 1997-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–171(171 aa)
Fragment:RESIDUES 1 - 171
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
SOLUTION NMR
NMR measurement conditions
pH 5.5;303 K
|
Resolution not provided
|
|
1AGP
THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLY-12 MUTANT OF P21-H-RAS
Deposited 1993-03-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12D
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.30 Å
|
|
1BKD
COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1
Deposited 1998-07-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;pH 8.0
|
Resolution 2.80 Å
R-free 0.281
|
|
1CLU
H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP
Deposited 1999-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 1 - 166
|
Mutation:GLY12PRO
|
MG MAGNESIUM ION × 1
DBG 3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;SEE REFERENCE DECRIBING THE STRUCTURE AND CITATIONS THEREIN, pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.70 Å
R-free 0.261
|
|
1CRP
THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY
Deposited 1993-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
1CRQ
THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY
Deposited 1993-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
1CRR
THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY
Deposited 1993-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
1CTQ
STRUCTURE OF P21RAS IN COMPLEX WITH GPPNHP AT 100 K
Deposited 1999-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 7.6;291 K;PROTEIN WAS CRYSTALLIZED FROM 28 % PEG 400, 10MM MGCL 264MM TRIS/HCL, PH 7.6, pH 7.60, micro-batch, temperature 18K
|
Resolution 1.26 Å
R-free 0.224
|
|
1GNP
X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP
Deposited 1995-05-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
AGN PHOSPHOAMINOPHOSPHONIC ACID 3'-O-(N-METHYLANTHRANILOYL-2'-DEOXYGUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.70 Å
|
|
1GNQ
X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP
Deposited 1995-05-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
CAG GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER] × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.50 Å
R-free 0.269
|
|
1GNR
X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP
Deposited 1995-05-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
CAG GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER] × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.85 Å
R-free 0.257
|
|
1IAQ
C-H-RAS P21 PROTEIN MUTANT WITH THR 35 REPLACED BY SER (T35S) COMPLEXED WITH GUANOSINE-5'-[B,G-IMIDO] TRIPHOSPHATE
Deposited 2001-03-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:CATALYTIC DOMAIN (RESIDUES 1-166)
|
Mutation:T35S
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;PEG1500, calcium chloride, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.90 Å
R-free 0.282
|
|
1IAQ
C-H-RAS P21 PROTEIN MUTANT WITH THR 35 REPLACED BY SER (T35S) COMPLEXED WITH GUANOSINE-5'-[B,G-IMIDO] TRIPHOSPHATE
Deposited 2001-03-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
Fragment:CATALYTIC DOMAIN (RESIDUES 1-166)
|
Mutation:T35S
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;PEG1500, calcium chloride, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.90 Å
R-free 0.282
|
|
1IAQ
C-H-RAS P21 PROTEIN MUTANT WITH THR 35 REPLACED BY SER (T35S) COMPLEXED WITH GUANOSINE-5'-[B,G-IMIDO] TRIPHOSPHATE
Deposited 2001-03-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
Fragment:CATALYTIC DOMAIN (RESIDUES 1-166)
|
Mutation:T35S
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;PEG1500, calcium chloride, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.90 Å
R-free 0.282
|
|
1IOZ
Crystal Structure of the C-HA-RAS Protein Prepared by the Cell-Free Synthesis
Deposited 2001-04-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–171(171 aa)
Fragment:RESIDUES 1-171
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;calcium acetate, sodium cacodylate, PEG8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.00 Å
R-free 0.283
|
|
1JAH
H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MAGNESIUM
Deposited 1996-12-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 1 - 166
|
Mutation:G12P
|
MG MAGNESIUM ION × 2
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;pH 7.5
|
Resolution 1.80 Å
R-free 0.290
|
|
1JAI
H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MANGANESE
Deposited 1996-12-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 1 - 166
|
Mutation:G12P
|
MN MANGANESE (II) ION × 2
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;pH 7.5
|
Resolution 1.80 Å
R-free 0.290
|
|
1K8R
Crystal structure of Ras-Bry2RBD complex
Deposited 2001-10-25
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:GTP-binding/catalytic domain, residues 1-166
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;PEG 3350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 3.00 Å
R-free 0.305
|
|
1LF0
Crystal Structure of RasA59G in the GTP-bound form
Deposited 2002-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:A59G
|
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;PEG1500, calcium chloride, magnesium chloride, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.70 Å
R-free 0.208
|
|
1LF5
Crystal Structure of RasA59G in the GDP-bound Form
Deposited 2002-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:A59G
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;PEG8000, calcium acetate, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.70 Å
R-free 0.245
|
|
1NVU
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:A59G
Mutation:A59G
|
MG MAGNESIUM ION × 1
PO4 PHOSPHATE ION × 5
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å
R-free 0.211
|
|
1NVU
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:A59G
Mutation:A59G
|
MG MAGNESIUM ION × 4
PO4 PHOSPHATE ION × 20
GTP GUANOSINE-5'-TRIPHOSPHATE × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å
R-free 0.211
|
|
1NVV
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
PO4 PHOSPHATE ION × 5
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.18 Å
R-free 0.241
|
|
1NVV
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:Y64A
|
MG MAGNESIUM ION × 8
PO4 PHOSPHATE ION × 40
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.18 Å
R-free 0.241
|
|
1NVV
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:Y64A
|
MG MAGNESIUM ION × 4
PO4 PHOSPHATE ION × 20
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.18 Å
R-free 0.241
|
|
1NVV
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:Y64A
|
MG MAGNESIUM ION × 2
PO4 PHOSPHATE ION × 10
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.18 Å
R-free 0.241
|
|
1NVW
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
MG MAGNESIUM ION × 1
PO4 PHOSPHATE ION × 7
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.70 Å
R-free 0.246
|
|
1NVW
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
MG MAGNESIUM ION × 8
PO4 PHOSPHATE ION × 56
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.70 Å
R-free 0.246
|
|
1NVW
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
MG MAGNESIUM ION × 4
PO4 PHOSPHATE ION × 28
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;1.2-1.5 M phosphate, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.70 Å
R-free 0.246
|
|
1NVX
Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
Deposited 2003-02-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Fragment:RESIDUES 1-166
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:A59G
Mutation:A59G
|
MG MAGNESIUM ION × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;2-8% PEG 4000, 100 mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 3.20 Å
R-free 0.261
|
|
1P2S
H-Ras 166 in 50% 2,2,2 triflouroethanol
Deposited 2003-04-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
ETF TRIFLUOROETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;298 K;PEG, MAGNESIUM CHLORIDE, DITHIOTHREITOL, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.45 Å
R-free 0.230
|
|
1P2T
H-Ras 166 in Aqueous mother liqour, RT
Deposited 2003-04-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;298 K;PEG, MAGNESIUM CHLORIDE, DITHIOTHREITOL, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.246
|
|
1P2U
H-Ras in 50% isopropanol
Deposited 2003-04-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
IPA ISOPROPYL ALCOHOL × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
R-free 0.248
|
|
1P2V
H-RAS 166 in 60 % 1,6 hexanediol
Deposited 2003-04-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
HEZ HEXANE-1,6-DIOL × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.30 Å
R-free 0.252
|
|
1PLJ
CRYSTALLOGRAPHIC STUDIES ON P21H-RAS USING SYNCHROTRON LAUE METHOD: IMPROVEMENT OF CRYSTAL QUALITY AND MONITORING OF THE GTPASE REACTION AT DIFFERENT TIME POINTS
Deposited 1994-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
CAG GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER] × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.80 Å
|
|
1PLK
CRYSTALLOGRAPHIC STUDIES ON P21H-RAS USING SYNCHROTRON LAUE METHOD: IMPROVEMENT OF CRYSTAL QUALITY AND MONITORING OF THE GTPASE REACTION AT DIFFERENT TIME POINTS
Deposited 1994-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
GTP GUANOSINE-5'-TRIPHOSPHATE × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.80 Å
|
|
1PLL
CRYSTALLOGRAPHIC STUDIES ON P21H-RAS USING SYNCHROTRON LAUE METHOD: IMPROVEMENT OF CRYSTAL QUALITY AND MONITORING OF THE GTPASE REACTION AT DIFFERENT TIME POINTS
Deposited 1994-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.80 Å
|
|
1Q21
CRYSTAL STRUCTURES AT 2.2 ANGSTROMS RESOLUTION OF THE CATALYTIC DOMAINS OF NORMAL RAS PROTEIN AND AN ONCOGENIC MUTANT COMPLEXED WITH GSP
Deposited 1991-09-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–171(171 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.20 Å
|
|
1QRA
STRUCTURE OF P21RAS IN COMPLEX WITH GTP AT 100 K
Deposited 1999-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:RESIDUES 1 - 166
|
Not recorded
|
MG MAGNESIUM ION × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS;pH 7.6;293 K;PROTEIN WAS CRYSTALLIZED FROM 26 % PEG 400, 10MM MGCL 264MM TRIS/HCL, PH 7.6, MICRODIALYSIS, temperature 293K
|
Resolution 1.60 Å
R-free 0.228
|
|
1RVD
H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP
Deposited 1999-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 1 - 166
|
Mutation:GLY12VAL
|
MG MAGNESIUM ION × 1
DBG 3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;SEE REFERENCE DECRIBING THE STRUCTURE AND CITATIONS THEREIN, pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.90 Å
R-free 0.274
|
|
1WQ1
RAS-RASGAP COMPLEX
Deposited 1997-07-03
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 1 - 166
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
AF3 ALUMINUM FLUORIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;SEE REF. DESCRIBING THE STRUCTURE, pH 8.
|
Resolution 2.50 Å
R-free 0.319
|
|
1XCM
Crystal structure of the GppNHp-bound H-Ras G60A mutant
Deposited 2004-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–167(167 aa)
|
Mutation:G60A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;PEG 2000 MME, magnesium sulfate, HEPES, hydrogen peroxide, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.84 Å
R-free 0.244
|
|
1XD2
Crystal Structure of a ternary Ras:SOS:Ras*GDP complex
Deposited 2004-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
Chain B
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
PO4 PHOSPHATE ION × 4
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;Hepes, Na/K phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.70 Å
R-free 0.245
|
|
1XJ0
Crystal Structure of the GDP-bound form of the RasG60A mutant
Deposited 2004-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:G60A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;PEG 4000, magnesium sulfate, Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.239
|
|
1ZVQ
Structure of the Q61G mutant of Ras in the GDP-bound form
Deposited 2005-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61G
|
MG MAGNESIUM ION × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;18% PEG4000, 50 mM Ca Acetate, 10 mM MgCl2, 100 mM Tris-HCl, 250 mM NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.229
|
|
1ZW6
Crystal Structure of the GTP-bound form of RasQ61G
Deposited 2005-06-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 3
CA CALCIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;22% PEG4000, 200mM Ca Acetate, 100 mM Tris-HCl, 10 mM MgCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.50 Å
R-free 0.174
|
|
221P
THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNAL SWITCH MOLECULES
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:D38E
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.30 Å
|
|
2C5L
Structure of PLC epsilon Ras association domain with hRas
Deposited 2005-10-27
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:YES
|
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.228
|
|
2C5L
Structure of PLC epsilon Ras association domain with hRas
Deposited 2005-10-27
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Mutation:YES
|
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.228
|
|
2CE2
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP
Deposited 2006-02-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;291 K;PROTEIN SOLUTION: 17.22 MG/ML PROTEIN, 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE, 35% PEG 400 MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
|
Resolution 1.00 Å
R-free 0.163
|
|
2CL0
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GppNHp
Deposited 2006-04-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
MG MAGNESIUM ION × 15
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6;RESERVOIR SOLUTION: 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0.1 MM SODIUM AZIDE, 26% PEG 400; PROTEIN SOLUTION: 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0.1 MM SODIUM AZIDE
|
Resolution 1.80 Å
R-free 0.185
|
|
2CL6
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH S-caged GTP
Deposited 2006-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
CAG GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER] × 1
MG MAGNESIUM ION × 1
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;291.15 K;PROTEIN SOLUTION: 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 100 MM HEPES PH 7.4, 200 MM MAGNESIUM ACETATE, 17% PEG 8000 (FRESHLY PREPARED) MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
|
Resolution 1.24 Å
R-free 0.186
|
|
2CL7
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP
Deposited 2006-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
MG MAGNESIUM ION × 2
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;291.15 K;PROTEIN SOLUTION: 13.35 MG/ML PROTEIN, 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 100 MM HEPES PH 7.2, 200 MM MAGNESIUM ACETATE, 16% PEG 8000 (FRESHLY PREPARED) MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
|
Resolution 1.25 Å
R-free 0.170
|
|
2CLC
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP (2)
Deposited 2006-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
MG MAGNESIUM ION × 2
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;291.15 K;PROTEIN SOLUTION: 13.35 MG/ML PROTEIN, 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 100 MM HEPES PH 7.2, 200 MM MAGNESIUM ACETATE, 16% PEG 8000 FRESHLY PREPARED) MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
|
Resolution 1.30 Å
R-free 0.180
|
|
2CLD
CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP (2)
Deposited 2006-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;291.15 K;PROTEIN SOLUTION: 13.35 MG/ML PROTEIN, 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 100 MM HEPES PH 7.2, 200 MM MAGNESIUM ACETATE, 16% PEG 8000 (FRESHLY PREPARED) MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
|
Resolution 1.22 Å
R-free 0.176
|
|
2EVW
Crystal structure analysis of a fluorescent form of H-Ras p21 in complex with R-caged GTP
Deposited 2005-11-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain X
1–166(166 aa)
Fragment:truncated form residues 1-166
|
Mutation:Y32C,C118S
|
MG MAGNESIUM ION × 1
CAG GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER] × 1
XY2 N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;291.15 K;protein solution: 64 mM TRIS pH 7.6, 20 mM magnesium chloride, 10 mM DTT, 0,1 mM sodium azide;
reservoir solution: 100 mM HEPES pH 7.2, 200 mM magnesium acetate, 16% PEG 8000 (freshly prepared)
mixture of equal volumes of protein and reservoir solution, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
|
Resolution 1.05 Å
R-free 0.181
|
|
2LCF
Solution structure of GppNHp-bound H-RasT35S mutant protein
Deposited 2011-04-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:T35S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
SOLUTION NMR
NMR measurement conditions
pH 6.8;298 K;Ionic strength (raw mmCIF value) 0.24;Pressure ambient
NMR sample composition
1-2mM [U-98% 13C; U-98% 15N] HRas-1, 1-2mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER-2, 10mM MAGNESIUM ION-3, 150mM sodium chloride-4, 25mM sodium phosphate-5, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
1-2mM [U-98% 15N] HRas-6, 1-2mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER-7, 10mM MAGNESIUM ION-8, 150mM sodium chloride-9, 25mM sodium phosphate-10, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
2LWI
Solution structure of H-RasT35S mutant protein in complex with Kobe2601
Deposited 2012-08-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Mutation:T35S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
KOB 2-(2,4-dinitrophenyl)-N-(4-fluorophenyl)hydrazinecarbothioamide × 1
|
SOLUTION NMR
NMR measurement conditions
pH 6.8;278 K;Ionic strength (raw mmCIF value) 0.22;Pressure ambient
NMR sample composition
1 mM [U-98% 13C; U-98% 15N] entity_1-1, 1 mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER-2, 8 mM MAGNESIUM ION-3, 120 mM sodium chloride-4, 20 mM sodium phosphate-5, 3.8 mM KOB-6, 80% D2O/20% DMSO_d6 | 80% D2O/20% DMSO_d6
NMR sample composition
1 mM entity_1-7, 1 mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER-8, 8 mM MAGNESIUM ION-9, 120 mM sodium chloride-10, 20 mM sodium phosphate-11, 3.8 mM KOB-12, 80% D2O/20% DMSO_d6 | 80% D2O/20% DMSO_d6
|
Resolution not provided
|
|
2N42
EC-NMR Structure of Human H-RasT35S mutant protein Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data
Deposited 2015-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T35S
|
No recorded non-water small molecule
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
2N46
EC-NMR Structure of Human H-RasT35S mutant protein Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data
Deposited 2015-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:T35S
|
No recorded non-water small molecule
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
2Q21
CRYSTAL STRUCTURES AT 2.2 ANGSTROMS RESOLUTION OF THE CATALYTIC DOMAINS OF NORMAL RAS PROTEIN AND AN ONCOGENIC MUTANT COMPLEXED WITH GSP
Deposited 1991-09-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–171(171 aa)
|
Mutation:G12V
|
MG MAGNESIUM ION × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.20 Å
|
|
2QUZ
Crystal Structure of the activating H-RasK117R mutant in Costello Syndrome, bound to Mg-GDP
Deposited 2007-08-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G-domain, residues 1-166
|
Mutation:K117R
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.6;293 K;37% PEG3350, 50mM TrisHCl pH8, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.49 Å
R-free 0.222
|
|
2RGA
Crystal structure of H-RasQ61I-GppNHp
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:Q61I
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20% PEG 3350, 10 % PEG 6000, 0.2M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.90 Å
R-free 0.212
|
|
2RGB
Crystal structure of H-RasQ61K-GppNHp
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:Q61K
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20% PEG 3350, 0.2M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.35 Å
R-free 0.218
|
|
2RGC
Crystal structure of H-RasQ61V-GppNHp
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:Q61V
|
MG MAGNESIUM ION × 2
CA CALCIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20 % PEG 3350, 0.2 M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.60 Å
R-free 0.213
|
|
2RGD
Crystal structure of H-RasQ61L-GppNHp
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:Q61L
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20 % PEG 3350, 0.2M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 2.00 Å
R-free 0.220
|
|
2RGE
Crystal structure of H-Ras-GppNHp
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Not recorded
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20% PEG 3350, 0.2M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.40 Å
R-free 0.219
|
|
2RGG
Crystal structure of H-RasQ61I-GppNHp, trigonal crystal form
Deposited 2007-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:Residues 1-166
|
Mutation:Q61I
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;20 % PEG 3350, 0.2 M Calcium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.45 Å
R-free 0.234
|
|
2UZI
Crystal structure of HRAS(G12V) - anti-RAS Fv complex
Deposited 2007-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
ZN ZINC ION × 5
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
PROTEIN WAS CRYSTALLIZED FROM 17-18 % PEG3350, 400 MM ZINC ACETATE, 100 MM SODIUM CACODYLATE, PH 5.8, 0.03 % DICHLOROMETHANE
|
Resolution 2.00 Å
R-free 0.271
|
|
2VH5
CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (disulfide free mutant) COMPLEX
Deposited 2007-11-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Mutation:YES
|
ZN ZINC ION × 3
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.8;PROTEIN WAS CRYSTALLIZED FROM 17-18 % PEG3350, 320 MM ZINC ACETATE, 100 MM SODIUM CACODYLATE, PH 5.8, 0.03 % DICHLOROMETHANE
|
Resolution 2.70 Å
R-free 0.291
|
|
2X1V
Crystal Structure of the activating H-Ras I163F mutant in Costello Syndrome, bound to MG-GDP
Deposited 2010-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G-DOMAIN, RESIDUES 1-166
|
Mutation:YES
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.6;18% POLYETHYLENE GLYCOL (PEG) 6000, 100 MM HEPES PH 7.4, 150 MM MGCL2.
|
Resolution 1.70 Å
R-free 0.227
|
|
3DDC
Crystal Structure of NORE1A in Complex with RAS
Deposited 2008-06-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:D30E, E31K
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;100MM C2H3NAO2, 20% PEG 2000, 250MM (NH4)2SO4, 10MM DTE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.230
|
|
3DDC
Crystal Structure of NORE1A in Complex with RAS
Deposited 2008-06-05
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:D30E, E31K
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;100MM C2H3NAO2, 20% PEG 2000, 250MM (NH4)2SO4, 10MM DTE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.230
|
|
3I3S
Crystal Structure of H-Ras with Thr50 replaced by Isoleucine
Deposited 2009-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain R
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T50I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 3
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;285 K;17% PEG 6000, 200 mM CaCl2, pH 7.5, hanging drop, temperature 285K
|
Resolution 1.36 Å
R-free 0.178
|
|
3I3S
Crystal Structure of H-Ras with Thr50 replaced by Isoleucine
Deposited 2009-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain R
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T50I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
MG MAGNESIUM ION × 18
CA CALCIUM ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;285 K;17% PEG 6000, 200 mM CaCl2, pH 7.5, hanging drop, temperature 285K
|
Resolution 1.36 Å
R-free 0.178
|
|
3I3S
Crystal Structure of H-Ras with Thr50 replaced by Isoleucine
Deposited 2009-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T50I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
MG MAGNESIUM ION × 6
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;285 K;17% PEG 6000, 200 mM CaCl2, pH 7.5, hanging drop, temperature 285K
|
Resolution 1.36 Å
R-free 0.178
|
|
3I3S
Crystal Structure of H-Ras with Thr50 replaced by Isoleucine
Deposited 2009-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T50I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
MG MAGNESIUM ION × 6
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;285 K;17% PEG 6000, 200 mM CaCl2, pH 7.5, hanging drop, temperature 285K
|
Resolution 1.36 Å
R-free 0.178
|
|
3K8Y
Allosteric modulation of H-Ras GTPase
Deposited 2009-10-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;0.2M Calcium acetate, 20% PEG 3350, 0.05% n-Octyl-B-D-glucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 1.30 Å
R-free 0.227
|
|
3K9L
Allosteric modulation of H-Ras GTPase
Deposited 2009-10-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y32F
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;0.2M Calcium Acetate, 5 mM MgCl2, 10 mM DTT, 20% PEG 3350., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
|
Resolution 1.80 Å
R-free 0.271
|
|
3K9L
Allosteric modulation of H-Ras GTPase
Deposited 2009-10-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y32F
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;0.2M Calcium Acetate, 5 mM MgCl2, 10 mM DTT, 20% PEG 3350., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
|
Resolution 1.80 Å
R-free 0.271
|
|
3K9L
Allosteric modulation of H-Ras GTPase
Deposited 2009-10-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y32F
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;0.2M Calcium Acetate, 5 mM MgCl2, 10 mM DTT, 20% PEG 3350., pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
|
Resolution 1.80 Å
R-free 0.271
|
|
3K9N
Allosteric modulation of H-Ras GTPase
Deposited 2009-10-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y32F
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.5 K;0.2M Calcium Acetate, 20 % PEG 3350, 5 mM MgCl2, 10 mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.5K
|
Resolution 2.00 Å
R-free 0.277
|
|
3KKM
Crystal structure of H-Ras T35S in complex with GppNHp
Deposited 2009-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G domain, UNP residues 1-166
|
Mutation:T35S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;Tris-HCl, Ammonium Sulfate, DMSO, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.232
|
|
3KKN
Crystal structure of H-Ras T35S in complex with GppNHp
Deposited 2009-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G domain, UNP residues 1-166
|
Mutation:T35S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;MES, Ammonium Sulfate, PEG-MME-5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.09 Å
R-free 0.242
|
|
3KUD
Complex of Ras-GDP with RafRBD(A85K)
Deposited 2009-11-27
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;298 K;1.3M Na-Malonat pH 6.0, 100 mM MES pH 6.1, 4% Betaine, 2% Sarcosine, 2% N,N-dimethylglycine, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.15 Å
R-free 0.264
|
|
3L8Y
Complex of Ras with cyclen
Deposited 2010-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 4
YCN 1,4,7,10-tetraazacyclododecane × 1
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;285 K;17% PEG6000, 200mM CaCl2, 30mM TRIS/HCL, 5mM MgCl2, 2mM DTE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.02 Å
R-free 0.238
|
|
3L8Z
H-Ras wildtype new crystal form
Deposited 2010-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;285 K;17% PEG6000, 200mM CaCl2, 30mM TRIS/HCL, 5mM MgCl2, 2mM DTE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 1.44 Å
R-free 0.220
|
|
3LBH
Ras soaked in Calcium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 1.85 Å
R-free 0.209
|
|
3LBH
Ras soaked in Calcium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 6
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 1.85 Å
R-free 0.209
|
|
3LBI
Ras soaked in Magnesium Acetate and back soaked in Calcium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 2.09 Å
R-free 0.217
|
|
3LBI
Ras soaked in Magnesium Acetate and back soaked in Calcium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 6
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 2.09 Å
R-free 0.217
|
|
3LBN
Ras soaked in Magnesium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 1.86 Å
R-free 0.224
|
|
3LBN
Ras soaked in Magnesium Acetate
Deposited 2010-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 3
MG MAGNESIUM ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291.15 K;200 mM Calcium Acetate, 20 % PEG 3350, 0.05% n-Octylglucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
|
Resolution 1.86 Å
R-free 0.224
|
|
3LO5
Crystal Structure of the dominant negative S17N mutant of Ras
Deposited 2010-02-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:H-Ras (UNP residues 1-166)
|
Mutation:S17N
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% (v/v) PEG400, 13% (w/v) PEG8000, 0.2 M calcium acetate, and 0.1 M Tris-HCl pH = 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.57 Å
R-free 0.296
|
|
3LO5
Crystal Structure of the dominant negative S17N mutant of Ras
Deposited 2010-02-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
Fragment:H-Ras (UNP residues 1-166)
|
Mutation:S17N
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% (v/v) PEG400, 13% (w/v) PEG8000, 0.2 M calcium acetate, and 0.1 M Tris-HCl pH = 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.57 Å
R-free 0.296
|
|
3LO5
Crystal Structure of the dominant negative S17N mutant of Ras
Deposited 2010-02-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
1–166(166 aa)
Fragment:H-Ras (UNP residues 1-166)
|
Mutation:S17N
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% (v/v) PEG400, 13% (w/v) PEG8000, 0.2 M calcium acetate, and 0.1 M Tris-HCl pH = 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.57 Å
R-free 0.296
|
|
3OIU
H-RasQ61L with allosteric switch in the "on" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 3
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;365mM Calcium Acetate, 24 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.32 Å
R-free 0.192
|
|
3OIU
H-RasQ61L with allosteric switch in the "on" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 9
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;365mM Calcium Acetate, 24 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.32 Å
R-free 0.192
|
|
3OIV
H-RasG12V with allosteric switch in the "off" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 3
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;200 Mm Calcium Chloride, 20 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.84 Å
R-free 0.198
|
|
3OIV
H-RasG12V with allosteric switch in the "off" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 3
MG MAGNESIUM ION × 9
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;200 Mm Calcium Chloride, 20 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.84 Å
R-free 0.198
|
|
3OIW
H-RasG12V with allosteric switch in the "on" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 3
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;200 Mm Calcium Acetate, 20 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.30 Å
R-free 0.210
|
|
3OIW
H-RasG12V with allosteric switch in the "on" state
Deposited 2010-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 9
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;200 Mm Calcium Acetate, 20 % PEG 3350, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.30 Å
R-free 0.210
|
|
3RRY
H-Ras crosslinked control, soaked in aqueous solution: one of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.60 Å
R-free 0.201
|
|
3RRZ
H-Ras in 70% glycerol: one of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
GOL GLYCEROL × 8
MG MAGNESIUM ION × 2
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.60 Å
R-free 0.205
|
|
3RS0
H-Ras soaked in neat cyclopentanol: one of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
YEG cyclopentanol × 2
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.40 Å
R-free 0.185
|
|
3RS2
H-Ras soaked in 50% 2,2,2-trifluoroethanol: one of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
ETF TRIFLUOROETHANOL × 2
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.84 Å
R-free 0.203
|
|
3RS3
H-Ras soaked in neat hexane: 1 of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
HEX HEXANE × 2
CA CALCIUM ION × 3
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.52 Å
R-free 0.207
|
|
3RS4
H-Ras soaked in 60% 1,6-hexanediol: 1 of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
HEZ HEXANE-1,6-DIOL × 1
MG MAGNESIUM ION × 2
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.70 Å
R-free 0.198
|
|
3RS5
H-Ras soaked in 55% dimethylformamide: 1 of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
DMF DIMETHYLFORMAMIDE × 4
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.68 Å
R-free 0.182
|
|
3RS7
H-Ras soaked in 50% isopropanol: 1 of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.70 Å
R-free 0.208
|
|
3RSL
H-Ras soaked in 90% R,S,R-bisfuranol: one of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
RSF (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-ol × 13
MG MAGNESIUM ION × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.70 Å
R-free 0.220
|
|
3RSO
H-Ras soaked in 20% S,R,S-bisfuranol: 1 of 10 in MSCS set
Deposited 2011-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 1
RSG (3S,3aR,6aS)-hexahydrofuro[2,3-b]furan-3-ol × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 7.5;298 K;20 % PEG 3350, 200mM Calcium Chloride, pH 7.5, hanging drop, temperature 298K
|
Resolution 1.60 Å
R-free 0.199
|
|
3TGP
Room temperature H-ras
Deposited 2011-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 7.6;291 K;Protein was crystallized from 28 % PEG 400, 10mM MgCl 264 mM TRIS/HCl, PH 7.6, pH 7.60, micro-batch, temperature 291.0K
|
Resolution 1.31 Å
R-free 0.213
|
|
421P
THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNAL SWITCH MOLECULES
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12R
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.20 Å
|
|
4DLR
H-Ras PEG 400/Ca(OAc)2, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 3
MG MAGNESIUM ION × 3
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.32 Å
R-free 0.186
|
|
4DLR
H-Ras PEG 400/Ca(OAc)2, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 18
MG MAGNESIUM ION × 18
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 6
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.32 Å
R-free 0.186
|
|
4DLS
H-Ras Set 1 CaCl2 'Mixed'
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.82 Å
R-free 0.194
|
|
4DLS
H-Ras Set 1 CaCl2 'Mixed'
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 12
MG MAGNESIUM ION × 12
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.82 Å
R-free 0.194
|
|
4DLT
H-Ras Set 2 Ca(OAc)2, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.70 Å
R-free 0.204
|
|
4DLT
H-Ras Set 2 Ca(OAc)2, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 6
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.70 Å
R-free 0.204
|
|
4DLU
H-Ras Set 1 Ca(OAc)2, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.60 Å
R-free 0.203
|
|
4DLU
H-Ras Set 1 Ca(OAc)2, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 6
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.60 Å
R-free 0.203
|
|
4DLV
H-Ras Set 2 CaCl2/DTT, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 3
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.57 Å
R-free 0.211
|
|
4DLV
H-Ras Set 2 CaCl2/DTT, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 6
MG MAGNESIUM ION × 18
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
sitting drop;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, sitting drop, temperature 298K
|
Resolution 1.57 Å
R-free 0.211
|
|
4DLW
H-Ras Set 2 Ca(OAc)2/DTT, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, temperature 298K, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.72 Å
R-free 0.202
|
|
4DLW
H-Ras Set 2 Ca(OAc)2/DTT, on
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
CA CALCIUM ION × 6
MG MAGNESIUM ION × 6
ACT ACETATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, temperature 298K, VAPOR DIFFUSION, SITTING DROP
|
Resolution 1.72 Å
R-free 0.202
|
|
4DLX
H-Ras Set 1 CaCl2/DTE, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 3
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.73 Å
R-free 0.198
|
|
4DLX
H-Ras Set 1 CaCl2/DTE, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 6
MG MAGNESIUM ION × 18
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 6
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.73 Å
R-free 0.198
|
|
4DLY
Set 1 CaCl2/DTT, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 3
MG MAGNESIUM ION × 2
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.57 Å
R-free 0.179
|
|
4DLY
Set 1 CaCl2/DTT, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 18
MG MAGNESIUM ION × 12
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 12
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.57 Å
R-free 0.179
|
|
4DLZ
H-Ras Set 2 Ca(OAc)2/DTE, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 2
MG MAGNESIUM ION × 3
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.66 Å
R-free 0.184
|
|
4DLZ
H-Ras Set 2 Ca(OAc)2/DTE, ordered off
Deposited 2012-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 12
MG MAGNESIUM ION × 18
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 12
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;20% PEG 3350, 200 mM Ca Acetate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.66 Å
R-free 0.184
|
|
4EFL
Crystal structure of H-Ras WT in complex with GppNHp (state 1)
Deposited 2012-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G domain, UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M MES, 0.2M ammonium sulfate, 30% (w/v) PEG 5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.204
|
|
4EFM
Crystal structure of H-Ras G12V in complex with GppNHp (state 1)
Deposited 2012-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G domain, UNP residues 1-166
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M MES, 0.2M ammonium sulfate, 30% (w/v) PEG 5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.221
|
|
4EFN
Crystal structure of H-Ras Q61L in complex with GppNHp (state 1)
Deposited 2012-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:G domain, UNP residues 1-166
|
Mutation:Q61L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1M MES, 0.2M ammonium sulfate, 30% (w/v) PEG 5000 MME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.30 Å
R-free 0.237
|
|
4G0N
Crystal Structure of wt H-Ras-GppNHp bound to the RBD of Raf Kinase
Deposited 2012-07-09
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 1
ACT ACETATE ION × 1
DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.8;291 K;Protein solution: 10 - 16 mg/mL, 50 mM HEPES, pH 7.2, 50 mM NaCl, 10mM MgCl2 5% Glycerol, 1mM DTE, 10 M ZnCl2
Reservoir solution:200mM calcium acetate, 100mM sodium cacodylate pH 6.5, 18% PEG 8000.
Drop: 1uL protein, 1uL reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.45 Å
R-free 0.229
|
|
4G3X
Crystal Structure of Q61L H-Ras-GppNHp bound to the RBD of Raf Kinase
Deposited 2012-07-15
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.8;291 K;Protein solution: 10 - 18 mg/mL, 50 mM HEPES, pH 7.2, 50 mM NaCl, 10mM MgCl2 5% Glycerol, 1mM DTE, 10 M ZnCl2 Reservoir solution:200mM calcium acetate, 100mM sodium cacodylate pH 6.5, 18% PEG 8000. Drop: 3uL protein, 3uL reservoir , VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 3.25 Å
R-free 0.271
|
|
4K81
Crystal structure of the Grb14 RA and PH domains in complex with GTP-loaded H-Ras
Deposited 2013-04-17
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12V
|
GOL GLYCEROL × 5
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.9;315 K;14% (w/v) PEG 3350, 100 mM MES, pH 5.9, 200 mM MgCl2, 2% glycerol, and 3% glucose, VAPOR DIFFUSION, HANGING DROP, temperature 315K
|
Resolution 2.40 Å
R-free 0.277
|
|
4K81
Crystal structure of the Grb14 RA and PH domains in complex with GTP-loaded H-Ras
Deposited 2013-04-17
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12V
|
GOL GLYCEROL × 2
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.9;315 K;14% (w/v) PEG 3350, 100 mM MES, pH 5.9, 200 mM MgCl2, 2% glycerol, and 3% glucose, VAPOR DIFFUSION, HANGING DROP, temperature 315K
|
Resolution 2.40 Å
R-free 0.277
|
|
4K81
Crystal structure of the Grb14 RA and PH domains in complex with GTP-loaded H-Ras
Deposited 2013-04-17
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12V
|
GOL GLYCEROL × 2
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.9;315 K;14% (w/v) PEG 3350, 100 mM MES, pH 5.9, 200 mM MgCl2, 2% glycerol, and 3% glucose, VAPOR DIFFUSION, HANGING DROP, temperature 315K
|
Resolution 2.40 Å
R-free 0.277
|
|
4K81
Crystal structure of the Grb14 RA and PH domains in complex with GTP-loaded H-Ras
Deposited 2013-04-17
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12V
|
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.9;315 K;14% (w/v) PEG 3350, 100 mM MES, pH 5.9, 200 mM MgCl2, 2% glycerol, and 3% glucose, VAPOR DIFFUSION, HANGING DROP, temperature 315K
|
Resolution 2.40 Å
R-free 0.277
|
|
4L9S
Crystal Structure of H-Ras G12C, GDP-bound
Deposited 2013-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12C
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;17% PEG8000, 0.1M CaCl2, 0.1M TRIS, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.61 Å
R-free 0.173
|
|
4L9W
Crystal Structure of H-Ras G12C, GMPPNP-bound
Deposited 2013-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
MG MAGNESIUM ION × 2
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;19% PEG3350, 0.2M CaCl2, pH 7.5, vapor diffusion, hanging drop, temperature 293K
|
Resolution 1.95 Å
R-free 0.189
|
|
4L9W
Crystal Structure of H-Ras G12C, GMPPNP-bound
Deposited 2013-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:GTPase domain, UNP residues 1-166
|
Mutation:G12C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
MG MAGNESIUM ION × 2
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;19% PEG3350, 0.2M CaCl2, pH 7.5, vapor diffusion, hanging drop, temperature 293K
|
Resolution 1.95 Å
R-free 0.189
|
|
4NYI
Approach for Targeting Ras with Small Molecules that Activate SOS-Mediated Nucleotide Exchange
Deposited 2013-12-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
2PX N-{1-[(5-methyl-1H-indol-3-yl)methyl]piperidin-4-yl}-L-tryptophanamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.96 Å
R-free 0.208
|
|
4NYJ
Approach for Targeting Ras with Small Molecules that Activate SOS-Mediated Nucleotide Exchange
Deposited 2013-12-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
2PZ N-[1-(1H-indol-3-ylmethyl)piperidin-4-yl]glycinamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.85 Å
R-free 0.187
|
|
4NYM
Approach for Targeting Ras with Small Molecules that Activate SOS-Mediated Nucleotide Exchange
Deposited 2013-12-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
RND N-[1-(1H-indol-3-ylmethyl)piperidin-4-yl]-L-tryptophanamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;0.1 M sodium acetate, 1.8 M sodium formate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.55 Å
R-free 0.214
|
|
4Q21
MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS
Deposited 1991-09-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
4RSG
Neutron crystal structure of Ras bound to the GTP analogue GppNHp
Deposited 2014-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
NEUTRON DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;18mg/mL protein, 0.2M calcium acetate, 20% PEG 3350, 20mM HEPES, 50mM NaCl, 20mM MgCl2, 0.1% N-octy-B-D-glucopyranoside, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.91 Å
R-free 0.287
|
|
4URU
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
6W2 4-METHOXY-N-(1,3-THIAZOL-2-YL)BENZENESULFONAMIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
3.2M SODIUM FORMATE, 2% DMSO
|
Resolution 2.83 Å
R-free 0.237
|
|
4URV
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
FMT FORMIC ACID × 2
UMK 4-(4-BROMOPHENYL)PIPERIDIN-4-OL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
3.2M SODIUM FORMATE, 2% DMSO
|
Resolution 2.58 Å
R-free 0.232
|
|
4URW
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
DXO 2-(2,6-DIMETHYLPHENYL)-4-(METHYLSULFANYL)-6-(PIPERAZIN-1-YL)-1,3,5-TRIAZINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
3.2M SODIUM FORMATE, 2% DMSO
|
Resolution 2.76 Å
R-free 0.230
|
|
4URX
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
FK1 6-bromo-1H-indole × 1
HXY 1-(4-bromobenzyl)pyrrolidine × 1
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.49 Å
R-free 0.227
|
|
4URY
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
RV1 N-[(4-aminophenyl)sulfonyl]cyclopropanecarboxamide × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.47 Å
R-free 0.229
|
|
4URZ
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:RESIDUES 1-166
|
Not recorded
|
VJP 1-[(4-aminophenyl)sulfonyl]piperidin-2-one × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.24 Å
R-free 0.212
|
|
4US0
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
NEN 1-ETHYL-PYRROLIDINE-2,5-DIONE × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.17 Å
R-free 0.212
|
|
4US1
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
L71 (3S)-3-[3-(aminomethyl)phenyl]-1-ethylpyrrolidine-2,5-dione × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.65 Å
R-free 0.231
|
|
4US2
The crystal structure of H-Ras and SOS in complex with ligands
Deposited 2014-07-02
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:UNP RESIDUES 1-166
|
Not recorded
|
L7S 3-[(3R)-1-ethyl-2,5-dioxopyrrolidin-3-yl]benzamide × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.48 Å
R-free 0.228
|
|
4XVQ
H-Ras Y137E
Deposited 2015-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y137E
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;152mM Ca(OAc)2, 24.8% PEG 3350, 4.8% stabilization buffer at pH 7.5.
|
Resolution 1.89 Å
R-free 0.254
|
|
4XVR
H-Ras Y137F
Deposited 2015-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:Y137F
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;139mM Ca(OAc)2, 22.6% PEG 3350, 13% stabilization buffer at pH 7.5
|
Resolution 2.03 Å
R-free 0.286
|
|
521P
THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNAL SWITCH MOLECULES
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V, A59T
|
MG MAGNESIUM ION × 2
GTP GUANOSINE-5'-TRIPHOSPHATE × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.60 Å
|
|
5B2Z
H-Ras WT in complex with GppNHp (state 2*) before structural transition by humidity control
Deposited 2016-02-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;PEG400, SODIUM ACETATE, CALCIUM ACETATE, MAGNESIUM CHLORIDE
|
Resolution 1.56 Å
R-free 0.178
|
|
5B30
H-Ras WT in complex with GppNHp (state 1) after structural transition by humidity control
Deposited 2016-02-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;PEG400, SODIUM ACETATE, CALCIUM ACETATE, MAGNESIUM CHLORIDE
|
Resolution 1.60 Å
R-free 0.196
|
|
5E95
Crystal Structure of Mb(NS1)/H-Ras Complex
Deposited 2015-10-14
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.2;292 K;0.2M Ammonium Fluoride, 20% PEG 2250
|
Resolution 1.40 Å
R-free 0.192
|
|
5P21
REFINED CRYSTAL STRUCTURE OF THE TRIPHOSPHATE CONFORMATION OF H-RAS P21 AT 1.35 ANGSTROMS RESOLUTION: IMPLICATIONS FOR THE MECHANISM OF GTP HYDROLYSIS
Deposited 1990-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.35 Å
|
|
5VBE
Crystal Structure of Small Molecule Disulfide 2C07 Bound to H-Ras M72C GDP
Deposited 2017-03-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:M72C
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
92V 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.7;293 K;22% PEG8000
.1M Tris HCl (pH 7.7)
.1 M CaCl2
|
Resolution 1.57 Å
R-free 0.201
|
|
5VBZ
Crystal Structure of Small Molecule Disulfide 2C07 Bound to H-Ras M72C GppNHp
Deposited 2017-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:M72C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;298 K;32% PEG4000
.1 M Na Cacodylate (pH 6.6)
.2 M CaCl2
|
Resolution 2.20 Å
R-free 0.253
|
|
5VBZ
Crystal Structure of Small Molecule Disulfide 2C07 Bound to H-Ras M72C GppNHp
Deposited 2017-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Mutation:M72C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;298 K;32% PEG4000
.1 M Na Cacodylate (pH 6.6)
.2 M CaCl2
|
Resolution 2.20 Å
R-free 0.253
|
|
5VBZ
Crystal Structure of Small Molecule Disulfide 2C07 Bound to H-Ras M72C GppNHp
Deposited 2017-03-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
|
Mutation:M72C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
92V 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;298 K;32% PEG4000
.1 M Na Cacodylate (pH 6.6)
.2 M CaCl2
|
Resolution 2.20 Å
R-free 0.253
|
|
5WDO
H-Ras bound to GMP-PNP at 277K
Deposited 2017-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
NA SODIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;16% PEG3350, 100 mM calcium acetate, pH 7.5
|
Resolution 1.65 Å
R-free 0.168
|
|
5WDP
H-Ras mutant L120A bound to GMP-PNP at 277K
Deposited 2017-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:L120A
|
CA CALCIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;293 K;17% PEG8000, 200 mM calcium acetate, 100 mM MES/NaOH, pH 6.0
|
Resolution 1.35 Å
R-free 0.154
|
|
5WDQ
H-Ras mutant L120A bound to GMP-PNP at 100K
Deposited 2017-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:L120A
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 4
NA SODIUM ION × 1
ACT ACETATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;17% PEG8000, 200 mM calcium acetate, 100 mM MES/NaOH, pH 6.0
|
Resolution 1.25 Å
R-free 0.150
|
|
5WFO
Ligand-bound Ras:SOS:Ras complex
Deposited 2017-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
5UU 6-chloranyl-~{N}-(4-fluorophenyl)-1,2,3,4-tetrahydroacridin-9-amine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.99 Å
R-free 0.188
|
|
5WFP
Ligand-bound Ras:SOS:Ras complex
Deposited 2017-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
5UX 6-chloranyl-~{N}-(3-chloranyl-4-fluoranyl-phenyl)-1,2,3,4-tetrahydroacridin-9-amine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.08 Å
R-free 0.203
|
|
5WFQ
Ligand-bound Ras:SOS:Ras complex
Deposited 2017-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
5UV 7-chloranyl-~{N}-(3-chloranyl-4-fluoranyl-phenyl)-1,2,3,4-tetrahydroacridin-9-amine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.26 Å
R-free 0.196
|
|
5WFR
Ligand-bound Ras:SOS:Ras complex
Deposited 2017-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
5UW ~{N}-(3,3-diphenylpropyl)piperidin-4-amine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.46 Å
R-free 0.194
|
|
5WPL
KRas G12V, bound to GppNHp and miniprotein 225-11
Deposited 2017-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M ammonium sulfate and 20-25% PEG3,350
|
Resolution 2.15 Å
R-free 0.258
|
|
5WPL
KRas G12V, bound to GppNHp and miniprotein 225-11
Deposited 2017-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain D
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M ammonium sulfate and 20-25% PEG3,350
|
Resolution 2.15 Å
R-free 0.258
|
|
5WPL
KRas G12V, bound to GppNHp and miniprotein 225-11
Deposited 2017-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain G
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 2
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M ammonium sulfate and 20-25% PEG3,350
|
Resolution 2.15 Å
R-free 0.258
|
|
5WPL
KRas G12V, bound to GppNHp and miniprotein 225-11
Deposited 2017-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain J
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M ammonium sulfate and 20-25% PEG3,350
|
Resolution 2.15 Å
R-free 0.258
|
|
5X9S
Crystal structure of fully modified H-Ras-GppNHp
Deposited 2017-03-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Not recorded
|
MG MAGNESIUM ION × 1
CA CALCIUM ION × 3
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Ca acetate, 20%(w/v) PEG8000, 0.1M MES (pH6.0)
|
Resolution 2.50 Å
R-free 0.236
|
|
5ZC6
Solution structure of H-RasT35S mutant protein in complex with KBFM123
Deposited 2018-02-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:T35S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
KBF 3-oxidanyl-~{N}-[[(2~{R})-oxolan-2-yl]methyl]naphthalene-2-carboxamide × 1
MG MAGNESIUM ION × 1
|
SOLUTION NMR
NMR measurement conditions
pH 6.8;278 K;Ionic strength (raw mmCIF value) 50;Pressure ambient
NMR sample composition
0.8 mM [U-99% 13C; U-99% 15N] H-RasT35S, 3.0 mM KBFM123, 20 mM sodium phosphate, 40 mM sodium chloride, 8 mM MAGNESIUM ION, 0.8 mM PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, 80% D2O/20% d6-DMSO | 80% D2O/20% d6-DMSO
|
Resolution not provided
|
|
621P
THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNAL SWITCH MOLECULES
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61H
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.40 Å
|
|
6AMB
Crystal Structure of the Afadin RA1 domain in complex with HRAS
Deposited 2017-08-09
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–168(168 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.9;297 K;PEG3350, K2HPO4
|
Resolution 2.50 Å
R-free 0.266
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain J
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6AXG
Structure of RasGRP4 in complex with HRas
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20% PEG3350 and 300 mM sodium thiocyanate
|
Resolution 3.30 Å
R-free 0.260
|
|
6BVI
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2017-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
EC4 6-chloro-N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-L-tryptophanamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4;292 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.75 Å
R-free 0.169
|
|
6BVJ
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2017-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
EAS 5-chloro-N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-L-tryptophanamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4;292 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.75 Å
R-free 0.168
|
|
6BVK
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2017-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
EAV N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-6-methyl-L-tryptophanamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;292 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.80 Å
R-free 0.179
|
|
6BVL
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2017-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
EBY N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-5-methyl-L-tryptophanamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;292 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.75 Å
R-free 0.171
|
|
6BVM
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2017-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
EBV (2S)-2-amino-1-[(3aR,6aS)-5-[(5-chloro-1H-indol-3-yl)methyl]hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-(1H-indol-3-yl)propan-1-one × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;292 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.80 Å
R-free 0.178
|
|
6CUO
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-03-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 6
FFS N~2~-(3-chlorophenyl)-N~4~-[(furan-2-yl)methyl]quinazoline-2,4-diamine × 1
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.73 Å
R-free 0.178
|
|
6CUP
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-03-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FFV N~2~-(3-chloro-4-fluorophenyl)-N~4~-[(1R)-1-cyclopropylethyl]quinazoline-2,4-diamine × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.83 Å
R-free 0.174
|
|
6CUR
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-03-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FFY N~2~-(3-chloro-4-fluorophenyl)-N~4~-[(1R)-1-cyclopropylethyl]-8-(1,2,3,6-tetrahydropyridin-4-yl)quinazoline-2,4-diamine × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.73 Å
R-free 0.176
|
|
6D55
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FWA 6-chloro-2-(2,6-diazaspiro[3.3]heptan-2-yl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-4-(4-methylpiperazin-1-yl)-1H-benzimidazole × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.68 Å
R-free 0.178
|
|
6D56
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FVM 6-chloro-2-(2,6-diazaspiro[3.3]heptan-2-yl)-4-(3,5-dimethyl-1H-pyrazol-4-yl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-1H-benzimidazole × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.68 Å
R-free 0.171
|
|
6D59
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FVJ 6-chloro-4-(3,5-dimethyl-1H-pyrazol-4-yl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazole × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 1;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.70 Å
R-free 0.173
|
|
6D5E
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CL CHLORIDE ION × 4
FVG 1-[(2S)-1-{6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazol-4-yl}pyrrolidin-2-yl]methanamine × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.75 Å
R-free 0.174
|
|
6D5G
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 6
CL CHLORIDE ION × 3
FVD 6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-4-(1,2,3,6-tetrahydropyridin-4-yl)-1H-benzimidazole × 1
GOL GLYCEROL × 3
BME BETA-MERCAPTOETHANOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.92 Å
R-free 0.172
|
|
6D5H
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CL CHLORIDE ION × 3
FV7 6-chloro-4-(2-chlorophenyl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazole × 1
FMT FORMIC ACID × 5
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.80 Å
R-free 0.189
|
|
6D5J
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FV4 6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazole × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.75 Å
R-free 0.175
|
|
6D5L
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 6
FW7 6-chloro-1-[(3-chloro-4-fluorophenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazole × 1
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.70 Å
R-free 0.175
|
|
6D5M
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
FW4 1-[(3-chloro-4-fluorophenyl)methyl]-5,6-dimethyl-2-(piperazin-1-yl)-1H-benzimidazole × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 2.08 Å
R-free 0.194
|
|
6D5V
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
FVY 1-[(3-chloro-4-fluorophenyl)methyl]-5,6-dimethyl-1H-benzimidazol-2-amine × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 2.04 Å
R-free 0.186
|
|
6D5W
Ras:SOS:Ras in complex with a small molecule activator
Deposited 2018-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain Q
1–166(166 aa)
Chain R
1–166(166 aa)
|
Mutation:Y64A
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
FVV 10-[(4-fluorophenyl)methyl]-2,3,4,10-tetrahydropyrimido[1,2-a]benzimidazole × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 2.48 Å
R-free 0.228
|
|
6DZH
HRAS G13D bound to GDP (H13GDP)
Deposited 2018-07-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;5.9% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, pH 7.5)
188.2 mM Calcium Acetate
18.8% PEG 3350
Crystals were grown in 2uL by 2uL drops of mother liquor to protein (7.7mg/mL)
Cryoprotectant for crystal diffraction: 70% mother liquor and 30% glycerol
|
Resolution 1.95 Å
R-free 0.218
|
|
6DZH
HRAS G13D bound to GDP (H13GDP)
Deposited 2018-07-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 2
CA CALCIUM ION × 1
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;5.9% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, pH 7.5)
188.2 mM Calcium Acetate
18.8% PEG 3350
Crystals were grown in 2uL by 2uL drops of mother liquor to protein (7.7mg/mL)
Cryoprotectant for crystal diffraction: 70% mother liquor and 30% glycerol
|
Resolution 1.95 Å
R-free 0.218
|
|
6DZH
HRAS G13D bound to GDP (H13GDP)
Deposited 2018-07-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;5.9% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, pH 7.5)
188.2 mM Calcium Acetate
18.8% PEG 3350
Crystals were grown in 2uL by 2uL drops of mother liquor to protein (7.7mg/mL)
Cryoprotectant for crystal diffraction: 70% mother liquor and 30% glycerol
|
Resolution 1.95 Å
R-free 0.218
|
|
6E6C
HRAS G13D bound to GppNHp (H13GNP)
Deposited 2018-07-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Not recorded
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;128 mM Calcium acetate, 20.8% PEG 3350, 20% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, at pH 7.5), Crystals were grown in 2uL by 2 uL drops of mother liquor to protein (22 mg/mL), Cryoprotectant: 70% glycerol and 30% mother liquor
|
Resolution 1.90 Å
R-free 0.230
|
|
6E6P
HRAS G13D bound to GppNHp (Ha,b,c13GNP)
Deposited 2018-07-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 1
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;152 mM Calcium Acetate, 22.8% PEG 3350, 9.5% stabilization buffer (20 mM HEPES pH 7.5, 50 mM NaCl, 20 mM MgCl2), Crystals were grown in 2uL by 2 uL drops of mother liquor to protein (22 mg/mL), Cryoprotectant: 70% glycerol and 30% mother liquor
|
Resolution 1.93 Å
R-free 0.237
|
|
6E6P
HRAS G13D bound to GppNHp (Ha,b,c13GNP)
Deposited 2018-07-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;152 mM Calcium Acetate, 22.8% PEG 3350, 9.5% stabilization buffer (20 mM HEPES pH 7.5, 50 mM NaCl, 20 mM MgCl2), Crystals were grown in 2uL by 2 uL drops of mother liquor to protein (22 mg/mL), Cryoprotectant: 70% glycerol and 30% mother liquor
|
Resolution 1.93 Å
R-free 0.237
|
|
6E6P
HRAS G13D bound to GppNHp (Ha,b,c13GNP)
Deposited 2018-07-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
Fragment:residues 1-166
|
Mutation:G13D
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 1
GOL GLYCEROL × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;152 mM Calcium Acetate, 22.8% PEG 3350, 9.5% stabilization buffer (20 mM HEPES pH 7.5, 50 mM NaCl, 20 mM MgCl2), Crystals were grown in 2uL by 2 uL drops of mother liquor to protein (22 mg/mL), Cryoprotectant: 70% glycerol and 30% mother liquor
|
Resolution 1.93 Å
R-free 0.237
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6MQT
HRAS G12S in complex with GDP
Deposited 2018-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.2 M Sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4,000
|
Resolution 1.50 Å
R-free 0.195
|
|
6NTC
Crystal Structure of G12V HRas-GppNHp bound in complex with the engineered RBD variant 1 of CRAF Kinase protein
Deposited 2019-01-28
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
GOL GLYCEROL × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293.15 K;30% PEG4000, 200mM NH4SO4, 100mM Na CaCo pH 6.5
|
Resolution 2.90 Å
R-free 0.278
|
|
6NTD
Crystal Structure of G12V HRas-GppNHp bound in complex with the engineered RBD variant 12 of CRAF Kinase protein
Deposited 2019-01-28
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
MG MAGNESIUM ION × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.6;293.15 K;30% PEG4000, 200mM NH4SO4, 100mM Na Citrate
|
Resolution 3.15 Å
R-free 0.287
|
|
6Q21
MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS
Deposited 1992-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–171(171 aa)
Chain B
1–171(171 aa)
Chain C
1–171(171 aa)
Chain D
1–171(171 aa)
|
Not recorded
|
MG MAGNESIUM ION × 4
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 4
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.95 Å
|
|
6V94
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
QTV 1-[(4-fluorophenyl)methyl]-2-methyl-4-nitro-1H-imidazole × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.80 Å
R-free 0.172
|
|
6V9F
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 6
QTS 1-[(4-chlorophenyl)methyl]-1H-benzimidazol-2-amine × 1
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.85 Å
R-free 0.171
|
|
6V9J
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
QTM 3-(2-aminoethyl)-4-(3-chloro-4-fluorophenoxy)benzene-1-sulfonamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.76 Å
R-free 0.166
|
|
6V9L
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
ACT ACETATE ION × 1
QTJ 4-(3-chloro-4-fluorophenoxy)benzene-1-sulfonamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.70 Å
R-free 0.175
|
|
6V9M
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
QTG 4-fluoro-2-methyl-N-propylbenzene-1-sulfonamide × 1
FMT FORMIC ACID × 6
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.65 Å
R-free 0.180
|
|
6V9N
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
FMT FORMIC ACID × 6
QTD 4-phenoxybenzene-1-sulfonamide × 1
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.65 Å
R-free 0.177
|
|
6V9O
Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
Deposited 2019-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
Chain C
1–166(166 aa)
|
Mutation:Y64A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
QTA 3-(phenylsulfonyl)benzene-1-sulfonamide × 2
FMT FORMIC ACID × 7
GOL GLYCEROL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, 2.0 M sodium formate, pH 4.0
|
Resolution 1.80 Å
R-free 0.169
|
|
6ZJ0
CRYSTAL STRUCTURE OF HRAS-G12D IN COMPLEX WITH GCP AND COMPOUND 18
Deposited 2020-06-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1
EZZ (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;278 K;30% PEG400, 200mM MgCl2, 100mM TRIS PH=8,5
|
Resolution 1.76 Å
R-free 0.228
|
|
6ZL3
CRYSTAL STRUCTURE OF HRAS IN COMPLEX WITH COMPOUND 18 and GDP
Deposited 2020-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
NA SODIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
EZZ (3~{S})-3-[2-[(dimethylamino)methyl]-1~{H}-indol-3-yl]-5-oxidanyl-2,3-dihydroisoindol-1-one × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;278 K;160mM Calcium acetate
20% Glycerol
14.4% PEG8000
80mM Sodium cacodylate
|
Resolution 2.03 Å
R-free 0.223
|
|
721P
THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNAL SWITCH MOLECULES
Deposited 1991-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61L
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
7DPH
H-Ras Q61H in complex with GppNHp (state 1) after structural transition by humidity control
Deposited 2020-12-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61H
|
MG MAGNESIUM ION × 6
NA SODIUM ION × 3
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;PEG400, SODIUM ACETATE, CALCIUM ACETATE
|
Resolution 1.54 Å
R-free 0.202
|
|
7DPJ
H-Ras Q61L in complex with GppNHp (state 1) after structural transition by humidity control
Deposited 2020-12-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:Q61L
|
MG MAGNESIUM ION × 2
CA CALCIUM ION × 3
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;PEG400, SODIUM ACETATE, CALCIUM
ACETATE
|
Resolution 1.98 Å
R-free 0.221
|
|
7JHP
Crystal structure of HRas in complex with the Ras-binding and cysteine-rich domains of CRaf-kinase
Deposited 2020-07-21
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:UNP residues 1-166
|
Mutation:R97C
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.1 M ammonium acetate, 0.1 M Bis-Tris, pH 5.5, 17% w/v PEG10000
|
Resolution 2.77 Å
R-free 0.264
|
|
7JIF
HRAS A59T GppNHp
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:A59T
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 12.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.002mL mother liquor to 0.002mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 37.3mM Ca(OAc)2, and 20.5% PEG 3350
|
Resolution 1.76 Å
R-free 0.250
|
|
7JIG
HRAS A59T GppNHp crystal 2
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:A59T
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 12.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 3.4mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 10mM Mg(OAc)2, and 44.8% PEG 400.
|
Resolution 2.32 Å
R-free 0.264
|
|
7JIH
HRAS A59E GppNHp
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:A59E
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 18.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 9.95mM Ca(OAc)2, and 19.9% PEG 3350.
|
Resolution 1.99 Å
R-free 0.254
|
|
7JIH
HRAS A59E GppNHp
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Mutation:A59E
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 18.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 9.95mM Ca(OAc)2, and 19.9% PEG 3350.
|
Resolution 1.99 Å
R-free 0.254
|
|
7JII
HRAS A59E GDP
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:A59E
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 15.2mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 43.5mM Ca(OAc)2, and 20.5% PEG 3350.
|
Resolution 1.53 Å
R-free 0.203
|
|
7JII
HRAS A59E GDP
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Mutation:A59E
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291.15 K;Starting concentration of HRAS A59T GppNHp was 15.2mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5.
Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 43.5mM Ca(OAc)2, and 20.5% PEG 3350.
|
Resolution 1.53 Å
R-free 0.203
|
|
7L0F
Monobody 12VC3 Bound to HRAS(WT)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.98 Å
R-free 0.191
|
|
7L0F
Monobody 12VC3 Bound to HRAS(WT)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.98 Å
R-free 0.191
|
|
7L0F
Monobody 12VC3 Bound to HRAS(WT)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.98 Å
R-free 0.191
|
|
7L0F
Monobody 12VC3 Bound to HRAS(WT)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain L
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 1.98 Å
R-free 0.191
|
|
7L0G
Monobody 12VC1 Bound to HRAS(G12C)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12C
|
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 2.54 Å
R-free 0.229
|
|
7L0G
Monobody 12VC1 Bound to HRAS(G12C)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Mutation:G12C
|
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 2.54 Å
R-free 0.229
|
|
7L0G
Monobody 12VC1 Bound to HRAS(G12C)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–166(166 aa)
|
Mutation:G12C
|
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 2.54 Å
R-free 0.229
|
|
7L0G
Monobody 12VC1 Bound to HRAS(G12C)
Deposited 2020-12-11
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–166(166 aa)
|
Mutation:G12C
|
GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;0.225 M Potassium sodium tartrate tetrahydrate, 15% w/v Polyethylene glycol 3,350
|
Resolution 2.54 Å
R-free 0.229
|
|
7OG9
GTPase HRAS under ambient pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.75 Å
R-free 0.217
|
|
7OGA
GTPase HRAS under 200 MPa pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.90 Å
R-free 0.235
|
|
7OGB
GTPase HRAS under 500 MPa pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 2
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.85 Å
R-free 0.236
|
|
7OGC
GTPase HRAS under 650 MPa pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 2
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.70 Å
R-free 0.221
|
|
7OGD
GTPase HRAS mutant D33K under ambient pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Mutation:D33K
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.95 Å
R-free 0.250
|
|
7OGE
GTPase HRAS mutant D33K under 200 MPa pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Mutation:D33K
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 2.10 Å
R-free 0.263
|
|
7OGF
GTPase HRAS mutant D33K under 900 MPa pressure
Deposited 2021-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Mutation:D33K
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 2
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;298 K;40 mM Tris HCL, 10 mM MgCl2, 2 mM DTE, 26-30 % PEG-400
|
Resolution 1.80 Å
R-free 0.333
|
|
7TAM
HRas G12V in complex with GDP
Deposited 2021-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:G12V
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 2
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;295.15 K;29% PEG 3350, 0.2 M calcium chloride, 0.1 M TRIS hydrochloride
|
Resolution 1.87 Å
R-free 0.201
|
|
7VV8
Crystal Structure of HRasQ61L(GMPPNP-bound) in complex with the Ras-binding domain(RBD) of SIN1
Deposited 2021-11-04
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG20000, 0.1M Sodim citrate. pH 5.0
|
Resolution 1.70 Å
R-free 0.199
|
|
7VV9
Crystal Structure of HRas(GMPPNP-bound) in complex with the Ras-binding domain(RBD) of SIN1
Deposited 2021-11-05
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–170(170 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;278 K;PEG 20000, Sodium citrate
|
Resolution 1.60 Å
R-free 0.200
|
|
7VVG
Crystal Structure of HRasG12V(GMPPNP-bound) in complex with the Ras-binding domain(RBD) of SIN1
Deposited 2021-11-06
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;278 K;PEG2000
|
Resolution 1.70 Å
R-free 0.202
|
|
821P
THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLYCINE-12 MUTANT OF P21H-RAS
Deposited 1993-03-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Mutation:G12P
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.50 Å
|
|
8BE6
Crystal structure of SOS1-HRas-peptidomimetic2
Deposited 2022-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;sodium formate 3 M, Tris 100mM pH 8.0
|
Resolution 2.90 Å
R-free 0.273
|
|
8BE7
Crystal structure of SOS1-HRas-peptidomimetic3
Deposited 2022-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;sodium formate 3 M, Tris 100mM pH 8.0
|
Resolution 3.00 Å
R-free 0.267
|
|
8BE8
Crystal structure of SOS1-HRas-peptidomimetic4
Deposited 2022-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
|
Not recorded
|
FMT FORMIC ACID × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;sodium formate 3 M, Tris 100mM pH 8.0
|
Resolution 2.40 Å
R-free 0.237
|
|
8BE9
Crystal structure of SOS1-HRas-peptidomimetic5
Deposited 2022-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
|
Not recorded
|
CL CHLORIDE ION × 3
FMT FORMIC ACID × 14
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;sodium formate 3 M, Tris 100mM pH 8.0
|
Resolution 2.51 Å
R-free 0.229
|
|
8BEA
Crystal structure of SOS1-HRas-peptidomimetic10
Deposited 2022-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain R
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;sodium formate 3 M, Tris 100mM pH 8.0
|
Resolution 2.47 Å
R-free 0.233
|
|
8BOS
Transition state analogue complex of small G protein and its GAP effector
Deposited 2022-11-15
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain R
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MGF TRIFLUOROMAGNESATE × 1
MG MAGNESIUM ION × 1
GAI GUANIDINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;precipitant: HEPES-Na 100 mM pH = 8.0, PEG3350 22% (w/v), (NH4)2SO4 20 mM, Gd-HCl 100 mM, NaF 20 mM
protein buffer: HRas 0.400 mM, RasGAP 0.400 mM, HEPES-Na 20 mM, NaF 20 mM
drop size: 5 uL, protein:precipitant ratio: 1:1.2
|
Resolution 2.10 Å
R-free 0.280
|
|
8BWG
HRas (1-166) Y64 phosphorylation
Deposited 2022-12-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain R
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;Using a commercial crystal screen (HAMPTON RESEARCH, HR2-130) yielded a hit for monophosphorylated HRas under sitting drop conditions (drop size 600 nL) with a 1:1 ratio of protein solution (phospho-HRas 0.4 mM, RasGAP 0.4 mM, Na-HEPES 20 mM pH = 8.0, MgCl2 5 mM, NaF 20 mM) and precipitant (Na-citrate 100 mM pH = 5.6, Li2SO4 1.0 M, CaCl2 200 mM). After three rounds of microseeding well-formed single crystals were obtained using 2.0 uL sitting drops and a 1:1 ratio of protein buffer (HRas 400 uM, RasGAP 400 uM, MgCl2 5 mM, Na-HEPES 20 mM pH = 8.0, NaF 20 mM) and precipitant (Na-Citrate 100 mM pH = 5.6, Li2SO4 800 mM, CaCl2 200 mM). These were harvested using cryoprotectant (80% precipitant, 20% glycerol (v/v)) and sent for data collection.
|
Resolution 1.32 Å
R-free 0.174
|
|
8CNJ
HRas(1-166) in complex with GDP and BeF3-
Deposited 2023-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
Chain B
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 2
BEF BERYLLIUM TRIFLUORIDE ION × 2
MG MAGNESIUM ION × 2
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;BeF3- GSA complexes were obtained under vapour diffusion sitting drop conditions. Protein buffer (HRas pY64 or HRas 0.4 mM, Na-HEPES 20 mM pH = 8.0, MgCl2 5 mM, NaF 20 mM) were mixed with precipitant in a 1:1 ratio with a total drop size of 600 nL. The precipitant solution consited of: (30 % (v/v) MPD, 100 mM imidazole, pH = 7.0). Protein crystals were soaked in their respective precipitant solutions containing 50 mM BeCl2 and subsequently flash-frozen using 20% glycerol as cryoprotectant.
|
Resolution 1.35 Å
R-free 0.179
|
|
8CNN
BeF3 Phospho-HRas GSA complex
Deposited 2023-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 2
ACT ACETATE ION × 3
GDP GUANOSINE-5'-DIPHOSPHATE × 1
BEF BERYLLIUM TRIFLUORIDE ION × 1
MG MAGNESIUM ION × 1
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;Protein buffer (phospho-HRas pY64 0.4 mM, RasGAP 0.4 mM, Na-HEPES 20 mM pH = 8.0, MgCl2 5 mM, NaF 20 mM) was mixed with precipitant in a 1:1 ratio with a total drop size of 600 nL. The precipitant solution consits of: 100 mM NaOAc, pH = 4.5, 200 mM Li2SO4, 50% PEG400 (v/v). Protein crystals were soaked in precipitant solutions containing 50-100 mM BeCl2 and subsequently flash-frozen using 20% glycerol as cryoprotectant.
|
Resolution 1.48 Å
R-free 0.188
|
|
8ELK
HRAS R97F Crystal Form 1
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97F
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 2
CA CALCIUM ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
HEPES
|
Resolution 1.80 Å
R-free 0.195
|
|
8ELR
HRAS R97F Crystal Form 2
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97F
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;Calcium Acetate
PEG3350,
Magnesium Chloride,
HEPES,
Sodium Chloride,
DTT
|
Resolution 2.05 Å
R-free 0.244
|
|
8ELS
HRAS R97A Crystal Form 1 R-state
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97A
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277.15 K;PEG 3350,
Calcium Acetate,
HEPES,
Calcium Chloride,
Magnesium Chloride
|
Resolution 2.27 Å
R-free 0.211
|
|
8ELT
HRAS R97G Crystal Form 2
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97G
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.66 Å
R-free 0.239
|
|
8ELU
HRAS R97G Crystal form 1
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97G
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.93 Å
R-free 0.209
|
|
8ELV
HRAS R97I Crystal Form 2
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 2.15 Å
R-free 0.270
|
|
8ELW
HRAS R97A Crystal Form 1 T-State
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97A
|
CA CALCIUM ION × 2
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Sodium Chloride,
Magnesium Chloride,
HEPES
|
Resolution 1.70 Å
R-free 0.186
|
|
8ELX
HRAS R97I Crystal Form 1
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97I
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.98 Å
R-free 0.286
|
|
8ELY
HRAS R97M Crystal Form 2
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97M
|
MG MAGNESIUM ION × 2
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.75 Å
R-free 0.227
|
|
8ELZ
HRAS R97M Crystal Form 1
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97M
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 2
DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE × 1
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.96 Å
R-free 0.202
|
|
8EM0
HRAS R97V Crystal Form 1
Deposited 2022-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–189(189 aa)
|
Mutation:R97V
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 2.11 Å
R-free 0.201
|
|
8FG3
HRAS R97L Crystal Form 2
Deposited 2022-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:R97L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.49 Å
R-free 0.247
|
|
8FG4
HRAS R97L Crystal Form 1
Deposited 2022-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:R97L
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
CA CALCIUM ION × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;PEG 3350,
Calcium Acetate,
Magnesium Chloride,
Sodium Chloride,
DTT
|
Resolution 1.85 Å
R-free 0.227
|
|
8OSM
GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE
Deposited 2023-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;293 K;40 MM TRIS HCL, 10 MM MGCL2, 2 MM DTE,
26-30 % PEG-400
|
Resolution 2.05 Å
R-free 0.224
|
|
8OSN
GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT AMBIENT PRESSURE
Deposited 2023-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;293 K;40 MM TRIS HCL, 10 MM MGCL2, 2 MM DTE, 26-30 % PEG-400
|
Resolution 1.80 Å
R-free 0.215
|
|
8OSO
GTPase HRAS in complex with Zn-cyclen under 500 MPa pressure
Deposited 2023-04-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
Fragment:GTPase HRAS N-terminally processed
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
PGE TRIETHYLENE GLYCOL × 1
YCN 1,4,7,10-tetraazacyclododecane × 1
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 7.5;293 K;40 MM TRIS HCL, 10 MM MGCL2, 2 MM DTE,
26-30 % PEG-400
|
Resolution 2.50 Å
R-free 0.280
|
|
8TBG
Tricomplex of RMC-7977, HRAS WT, and CypA
Deposited 2023-06-28
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
ZNI (1R,5S,6r)-N-[(1P,7S,9S,13S,20M)-20-{5-(4-cyclopropylpiperazin-1-yl)-2-[(1S)-1-methoxyethyl]pyridin-3-yl}-21-ethyl-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-3-oxabicyclo[3.1.0]hexane-6-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;291 K;28% PEG4000, 0.1 M Tris, pH 8
|
Resolution 1.20 Å
R-free 0.192
|
|
8TBG
Tricomplex of RMC-7977, HRAS WT, and CypA
Deposited 2023-06-28
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
GOL GLYCEROL × 1
ZNI (1R,5S,6r)-N-[(1P,7S,9S,13S,20M)-20-{5-(4-cyclopropylpiperazin-1-yl)-2-[(1S)-1-methoxyethyl]pyridin-3-yl}-21-ethyl-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-3-oxabicyclo[3.1.0]hexane-6-carboxamide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;291 K;28% PEG4000, 0.1 M Tris, pH 8
|
Resolution 1.20 Å
R-free 0.192
|
|
8TLR
Crystal Structure of human HRAS G12C covalently bound to AMG 510
Deposited 2023-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Mutation:G12C
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MOV AMG 510 (bound form) × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1 M MES
30% PEG 4000
|
Resolution 1.70 Å
R-free 0.210
|
|
8WWC
De novo design binder of HRAS -120-4
Deposited 2023-10-25
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;289 K;0.1M Bis Tris Propane pH7.5 0.2M Sodium nitrate 20% w/v PEG3350 10%v/v Ethylene glycol
|
Resolution 2.80 Å
R-free 0.247
|
|
8WWC
De novo design binder of HRAS -120-4
Deposited 2023-10-25
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;289 K;0.1M Bis Tris Propane pH7.5 0.2M Sodium nitrate 20% w/v PEG3350 10%v/v Ethylene glycol
|
Resolution 2.80 Å
R-free 0.247
|
|
9P46
Crystal structure of HRAS-G12D/Q95H (GMPPNP-bound) in complex with BBO-11818
Deposited 2025-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–169(169 aa)
|
Mutation:G12D, Q95H, C118S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
A1CG4 methyl (3S)-3-{[(7P)-7-(2-amino-3-cyano-7-fluoro-1-benzothiophen-4-yl)-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-4-yl](ethyl)amino}pyrrolidine-1-carboxylate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M Bis-Tris pH 5.5, 25% PEG 3350, 0.2 M MgCl2
|
Resolution 2.02 Å
R-free 0.228
|
|
9P46
Crystal structure of HRAS-G12D/Q95H (GMPPNP-bound) in complex with BBO-11818
Deposited 2025-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–169(169 aa)
|
Mutation:G12D, Q95H, C118S
|
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
MG MAGNESIUM ION × 1
A1CG4 methyl (3S)-3-{[(7P)-7-(2-amino-3-cyano-7-fluoro-1-benzothiophen-4-yl)-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-4-yl](ethyl)amino}pyrrolidine-1-carboxylate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M Bis-Tris pH 5.5, 25% PEG 3350, 0.2 M MgCl2
|
Resolution 2.02 Å
R-free 0.228
|
|
9PU1
HRAS complex with UM0140401 compound
Deposited 2025-07-30
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;Tris
|
Resolution 1.40 Å
R-free 0.177
|
|
9PU3
HRAS complex with UM0140692 compound
Deposited 2025-07-30
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Tris
|
Resolution 1.70 Å
R-free 0.217
|
|
9PU8
HRAS complex with UM0140693 compound
Deposited 2025-07-30
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–165(165 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Tris
|
Resolution 1.40 Å
R-free 0.179
|
|
9PUL
HRAS complex with UM0143525 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;0.1M Tris, 0.2 M CaCl2, 18 % PEG 4,000
|
Resolution 2.50 Å
R-free 0.267
|
|
9PUL
HRAS complex with UM0143525 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;0.1M Tris, 0.2 M CaCl2, 18 % PEG 4,000
|
Resolution 2.50 Å
R-free 0.267
|
|
9PUL
HRAS complex with UM0143525 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;0.1M Tris, 0.2 M CaCl2, 18 % PEG 4,000
|
Resolution 2.50 Å
R-free 0.267
|
|
9PUL
HRAS complex with UM0143525 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293.15 K;0.1M Tris, 0.2 M CaCl2, 18 % PEG 4,000
|
Resolution 2.50 Å
R-free 0.267
|
|
9PUN
HRAS complex with UM0148697 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.4;293.15 K;0.1 M Tris, 0.2 M MgCl2, 26 % PEG 3,350
|
Resolution 2.40 Å
R-free 0.260
|
|
9PUN
HRAS complex with UM0148697 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.4;293.15 K;0.1 M Tris, 0.2 M MgCl2, 26 % PEG 3,350
|
Resolution 2.40 Å
R-free 0.260
|
|
9PUN
HRAS complex with UM0148697 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.4;293.15 K;0.1 M Tris, 0.2 M MgCl2, 26 % PEG 3,350
|
Resolution 2.40 Å
R-free 0.260
|
|
9PUQ
HRAS complex with UM0152248 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293.15 K;0.1 M Tris, 0.2 M CaCl2, 23 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.246
|
|
9PUQ
HRAS complex with UM0152248 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293.15 K;0.1 M Tris, 0.2 M CaCl2, 23 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.246
|
|
9PUQ
HRAS complex with UM0152248 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293.15 K;0.1 M Tris, 0.2 M CaCl2, 23 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.246
|
|
9PUT
HRAS complex with UM0152535 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.7;293.15 K;0.1 M Bis-Tris, 0.2 M NaCl2, 21 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.233
|
|
9PUT
HRAS complex with UM0152535 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.7;293.15 K;0.1 M Bis-Tris, 0.2 M NaCl2, 21 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.233
|
|
9PUZ
HRAS complex with UM0153030 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PO4 PHOSPHATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.7;293.15 K;0.1 M Tris, 0.2 M CaCl2, 22 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.253
|
|
9PUZ
HRAS complex with UM0153030 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.7;293.15 K;0.1 M Tris, 0.2 M CaCl2, 22 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.253
|
|
9PUZ
HRAS complex with UM0153030 compound
Deposited 2025-07-31
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.7;293.15 K;0.1 M Tris, 0.2 M CaCl2, 22 % PEG 4,000
|
Resolution 2.00 Å
R-free 0.253
|
|
9PVE
HRAS complex with UM0152533 compound
Deposited 2025-08-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.3;293.15 K;0.1 M Sodium citrate, 16 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.242
|
|
9PVE
HRAS complex with UM0152533 compound
Deposited 2025-08-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.3;293.15 K;0.1 M Sodium citrate, 16 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.242
|
|
9PVE
HRAS complex with UM0152533 compound
Deposited 2025-08-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.3;293.15 K;0.1 M Sodium citrate, 16 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.242
|
|
9PVE
HRAS complex with UM0152533 compound
Deposited 2025-08-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–166(166 aa)
|
Not recorded
|
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.3;293.15 K;0.1 M Sodium citrate, 16 % PEG 3,350
|
Resolution 2.00 Å
R-free 0.242
|
|
9Z5W
Crystal structure of HRAS in complex with N-LHY affibody
Deposited 2025-11-12
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–166(166 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.80 Å
R-free 0.224
|