1ncp
;STRUCTURAL CHARACTERIZATION OF A 39 RESIDUE SYNTHETIC PEPTIDE CONTAINING THE TWO ZINC BINDING DOMAINS FROM THE HIV-1 P7 NUCLEOCAPSID PROTEIN BY CD AND NMR SPECTROSCOPY ;
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1ncp |
| 沉积日期 deposition_date | 1991-11-27 |
| 结构标题 title | ;STRUCTURAL CHARACTERIZATION OF A 39 RESIDUE SYNTHETIC PEPTIDE CONTAINING THE TWO ZINC BINDING DOMAINS FROM THE HIV-1 P7 NUCLEOCAPSID PROTEIN BY CD AND NMR SPECTROSCOPY ; |
| 关键词 keywords | NUCLEOCAPSID PROTEIN, Viral protein; VIRAL PROTEIN |
| 实验方法 method | SOLUTION NMR |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 7.87 Å |
| 回转半径 Rg (电子) rg_electron | 7.24 Å |
| 零角强度 I(0) i0 | 545407.00 |
| 分子量 molecular_weight | 4126.0 kDa |
| 排除体积 excluded_volume | 4808 ų |
| 包络体积 envelope_volume | 3592 ų |
| 水化壳体积 shell_volume | 4366 ų |
| 包络直径 envelope_diameter | 28.0 Å |
| 壳层 Rg shell_rg | 12.25 Å |
| 包络 Rg envelope_rg | 8.24 Å |
| 形状 Rg shape_rg | 7.30 Å |
| 总 Rg total_rg | 8.44 Å |
| 总原子数 total_atoms | 534 |
| 残基数 n_residues | 35 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 30.1 Å |
| Rg (实空间) rg_real | 7.92 Å |
| Rg 误差 (实空间) rg_real_error | 0.46 Å |
| I(0) (实空间) i0_real | 5.4540e+05 |
| I(0) 误差 (实空间) i0_real_error | 6.0370e+03 |
| Rg (倒空间) rg_reciprocal | 7.92 Å |
| I(0) (倒空间) i0_reciprocal | 545400.0000 |
| 解质量估计 total_estimate | 0.7970 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 8.8 Å |
| 偏度 Skewness skewness | 0.510 |
| 峰度 Kurtosis kurtosis | 0.111 |
| 角度范围 angular_range | — – 0.5000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 6714.0000 |
| 实空间数据点数 n_real_points | 80 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.611; Stabil: 0.994; Sysdev: 1.000; Positv: 1.000; Valcen: 0.650; Smooth: 0.894 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 2 domains
SCOP 2.08 (2 domains)
| 结构域编号 domain_id | d1ncpc_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.40 — Retrovirus zinc finger-like domains |
| 超家族 Superfamily superfamily | g.40.1 — Retrovirus zinc finger-like domains |
| 家族 Family family | g.40.1.1 — Retrovirus zinc finger-like domains |
| 结构域编号 domain_id | d1ncpn_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.40 — Retrovirus zinc finger-like domains |
| 超家族 Superfamily superfamily | g.40.1 — Retrovirus zinc finger-like domains |
| 家族 Family family | g.40.1.1 — Retrovirus zinc finger-like domains |