1omw
;Crystal Structure of the complex between G Protein-Coupled Receptor Kinase 2 and Heterotrimeric G Protein beta 1 and gamma 2 subunits ;
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1omw |
| 沉积日期 deposition_date | 2003-02-26 |
| 结构标题 title | ;Crystal Structure of the complex between G Protein-Coupled Receptor Kinase 2 and Heterotrimeric G Protein beta 1 and gamma 2 subunits ; |
| 关键词 keywords | WD-40 repeat, TRANSFERASE; TRANSFERASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 42.49 Å |
| 回转半径 Rg (电子) rg_electron | 42.59 Å |
| 零角强度 I(0) i0 | 206077000.00 |
| 分子量 molecular_weight | 115800.0 kDa |
| 排除体积 excluded_volume | 144420 ų |
| 包络体积 envelope_volume | 207080 ų |
| 水化壳体积 shell_volume | 42741 ų |
| 包络直径 envelope_diameter | 148.4 Å |
| 壳层 Rg shell_rg | 44.61 Å |
| 包络 Rg envelope_rg | 42.00 Å |
| 形状 Rg shape_rg | 42.57 Å |
| 总 Rg total_rg | 42.76 Å |
| 总原子数 total_atoms | 8125 |
| 残基数 n_residues | 1013 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 147.7 Å |
| Rg (实空间) rg_real | 42.85 Å |
| Rg 误差 (实空间) rg_real_error | 1.96 Å |
| I(0) (实空间) i0_real | 2.0610e+08 |
| I(0) 误差 (实空间) i0_real_error | 4.0590e+06 |
| Rg (倒空间) rg_reciprocal | 42.49 Å |
| I(0) (倒空间) i0_reciprocal | 206000000.0000 |
| 解质量估计 total_estimate | 0.7367 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 31.9 Å |
| 偏度 Skewness skewness | 0.446 |
| 峰度 Kurtosis kurtosis | -0.664 |
| 角度范围 angular_range | — – 0.1850 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 23660000.0000 |
| 实空间数据点数 n_real_points | 38 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.643; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.644; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (5 domains)
| 结构域编号 domain_id | d1omwa1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.91 — Regulator of G-protein signaling, RGS |
| 超家族 Superfamily superfamily | a.91.1 — Regulator of G-protein signaling, RGS |
| 家族 Family family | a.91.1.1 — Regulator of G-protein signaling, RGS |
| 结构域编号 domain_id | d1omwa2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.55 — PH domain-like barrel |
| 超家族 Superfamily superfamily | b.55.1 — PH domain-like |
| 家族 Family family | b.55.1.1 — Pleckstrin-homology domain (PH domain) |
| 结构域编号 domain_id | d1omwa3 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.144 — Protein kinase-like (PK-like) |
| 超家族 Superfamily superfamily | d.144.1 — Protein kinase-like (PK-like) |
| 家族 Family family | d.144.1.7 — Protein kinases, catalytic subunit |
| 结构域编号 domain_id | d1omwb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.69 — 7-bladed beta-propeller |
| 超家族 Superfamily superfamily | b.69.4 — WD40 repeat-like |
| 家族 Family family | b.69.4.1 — WD40-repeat |
| 结构域编号 domain_id | d1omwg_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.137 — Non-globular all-alpha subunits of globular proteins |
| 超家族 Superfamily superfamily | a.137.3 — Transducin (heterotrimeric G protein), gamma chain |
| 家族 Family family | a.137.3.1 — Transducin (heterotrimeric G protein), gamma chain |
CATH v4.4 (7 domains)
| 结构域编号 domain_id | 1omwA01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1270 — |
| 结构域编号 domain_id | 1omwA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 167 — Regulator of G-protein Signalling 4; domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Regulator of G-protein Signalling 4, domain 2 |
| 结构域编号 domain_id | 1omwA03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 200 — Phosphorylase Kinase; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 20 — Phosphorylase Kinase; domain 1 |
| 结构域编号 domain_id | 1omwA04 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 510 — Transferase(Phosphotransferase); domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Transferase(Phosphotransferase) domain 1 |
| 结构域编号 domain_id | 1omwA05 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 30 — Roll |
| 拓扑 Topology topology | 29 — PH-domain like |
| 同源超家族 H-superfamily homologous superfamily | 30 — Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) |
| 结构域编号 domain_id | 1omwB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 130 — 7 Propeller |
| 拓扑 Topology topology | 10 — Methylamine Dehydrogenase; Chain H |
| 同源超家族 H-superfamily homologous superfamily | 10 — YVTN repeat-like/Quinoprotein amine dehydrogenase |
| 结构域编号 domain_id | 1omwG00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 260 — G Protein Gi Gamma 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Transducin (heterotrimeric G protein), gamma chain |