1t01

Vinculin complexed with the VBS1 helix from talin

Method: X-RAY DIFFRACTION Dmax: 99.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

unnamed protein product

Gallus gallus

UniProt P12003

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–254 Fragment:vinculin head Talin 1 × 1 (P26039) X-RAY DIFFRACTION X-ray crystallization conditions:pH 6.5;293 K;30%PEG 5000, 0.1M MES, 0.2M Ammonium Sulphate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 6.50 Resolution 2.06 Å R-free 0.303

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

14 other PDB entries and 15 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name VINC_CHICK
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–255; UniProt 1–254

Talin 1

Mus musculus

UniProt P26039

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 605–628 Fragment:talin (vinculin binding site 1) unnamed protein product × 1 (P12003) X-RAY DIFFRACTION X-ray crystallization conditions:pH 6.5;293 K;30%PEG 5000, 0.1M MES, 0.2M Ammonium Sulphate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 6.50 Resolution 2.06 Å R-free 0.303

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

50 other PDB entries and 70 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TLN1_MOUSE
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–24; UniProt 605–628

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1t01

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1t01
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1t01
Deposition date deposition_date2004-04-07
Structure title titleVinculin complexed with the VBS1 helix from talin
Keywords keywordsfive helix bundle, CELL ADHESION, STRUCTURAL PROTEIN; CELL ADHESION, STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier26.37
Radius of gyration Rg (electron density) rg_electron26.61
Forward intensity I(0) i016240000.00
Molecular weight molecular_weight30889.0 kDa
Excluded volume excluded_volume38919 ų
Envelope volume envelope_volume47628 ų
Hydration-shell volume shell_volume17761 ų
Envelope diameter envelope_diameter104.4
Shell Rg shell_rg28.87
Envelope Rg envelope_rg26.93
Shape Rg shape_rg26.62
Total Rg total_rg26.87
Total atoms total_atoms2160
Residues n_residues279
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax99.5
Rg (real space) rg_real26.92
Rg uncertainty (real space) rg_real_error1.21
I(0) (real space) i0_real1.6240e+07
I(0) uncertainty (real space) i0_real_error2.4760e+05
Rg (reciprocal space) rg_reciprocal26.75
I(0) (reciprocal space) i0_reciprocal16240000.0000
Solution quality estimate total_estimate0.7166
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary19.9
Skewness Skewness skewness0.742
Kurtosis Kurtosis kurtosis0.007
Angular range angular_range— – 0.3000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3939000.0000
Real-space data points n_real_points61
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.399; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.137; Smooth: 0.978

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd1t01a1
Class classa — All alpha proteins
Fold Fold folda.24 — Four-helical up-and-down bundle
Superfamily Superfamily superfamilya.24.9 — alpha-catenin/vinculin-like
Family Family familya.24.9.1 — alpha-catenin/vinculin
Domain ID domain_idd1t01a2
Class classa — All alpha proteins
Fold Fold folda.24 — Four-helical up-and-down bundle
Superfamily Superfamily superfamilya.24.9 — alpha-catenin/vinculin-like
Family Family familya.24.9.1 — alpha-catenin/vinculin
Domain ID domain_idd1t01a3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (2 domains)

Domain ID domain_id1t01A01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily230 — Alpha-catenin/vinculin-like
Domain ID domain_id1t01A02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily230 — Alpha-catenin/vinculin-like

8. Citations (1)

9. Files and Curves (10)