2cly
Subcomplex of the stator of bovine mitochondrial ATP synthase
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2cly |
| 沉积日期 deposition_date | 2006-05-03 |
| 结构标题 title | Subcomplex of the stator of bovine mitochondrial ATP synthase |
| 关键词 keywords | ;MITOCHONDRIA, MITOCHONDRION, ION TRANSPORT, CF(0), STATOR, TRANSPORT, ACETYLATION, ATP SYNTHASE, HYDROGEN ION TRANSPORT, TRANSIT PEPTIDE, PERIPHERAL STALK, HYDROLASE ;; HYDROLASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 43.08 Å |
| 回转半径 Rg (电子) rg_electron | 43.95 Å |
| 零角强度 I(0) i0 | 73852900.00 |
| 分子量 molecular_weight | 68700.0 kDa |
| 排除体积 excluded_volume | 86153 ų |
| 包络体积 envelope_volume | 138790 ų |
| 水化壳体积 shell_volume | 30702 ų |
| 包络直径 envelope_diameter | 184.3 Å |
| 壳层 Rg shell_rg | 38.83 Å |
| 包络 Rg envelope_rg | 46.37 Å |
| 形状 Rg shape_rg | 43.89 Å |
| 总 Rg total_rg | 43.78 Å |
| 总原子数 total_atoms | 4839 |
| 残基数 n_residues | 583 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 181.3 Å |
| Rg (实空间) rg_real | 43.79 Å |
| Rg 误差 (实空间) rg_real_error | 3.42 Å |
| I(0) (实空间) i0_real | 7.3850e+07 |
| I(0) 误差 (实空间) i0_real_error | 1.6750e+06 |
| Rg (倒空间) rg_reciprocal | 43.08 Å |
| I(0) (倒空间) i0_reciprocal | 73790000.0000 |
| 解质量估计 total_estimate | 0.6446 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 39.2 Å |
| 偏度 Skewness skewness | 0.682 |
| 峰度 Kurtosis kurtosis | 0.043 |
| 角度范围 angular_range | — – 0.1850 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 4385000.0000 |
| 实空间数据点数 n_real_points | 38 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.371; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.262; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (6 domains)
| 结构域编号 domain_id | d2clya1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.52 — ATP synthase B chain-like |
| 超家族 Superfamily superfamily | f.52.1 — ATP synthase B chain-like |
| 家族 Family family | f.52.1.1 — ATP synthase B chain-like |
| 结构域编号 domain_id | d2clyb1 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.53 — ATP synthase D chain-like |
| 超家族 Superfamily superfamily | f.53.1 — ATP synthase D chain-like |
| 家族 Family family | f.53.1.1 — ATP synthase D chain-like |
| 结构域编号 domain_id | d2clyc_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.45 — Mitochondrial ATP synthase coupling factor 6 |
| 超家族 Superfamily superfamily | f.45.1 — Mitochondrial ATP synthase coupling factor 6 |
| 家族 Family family | f.45.1.1 — Mitochondrial ATP synthase coupling factor 6 |
| 结构域编号 domain_id | d2clyd_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.52 — ATP synthase B chain-like |
| 超家族 Superfamily superfamily | f.52.1 — ATP synthase B chain-like |
| 家族 Family family | f.52.1.1 — ATP synthase B chain-like |
| 结构域编号 domain_id | d2clye_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.53 — ATP synthase D chain-like |
| 超家族 Superfamily superfamily | f.53.1 — ATP synthase D chain-like |
| 家族 Family family | f.53.1.1 — ATP synthase D chain-like |
| 结构域编号 domain_id | d2clyf_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.45 — Mitochondrial ATP synthase coupling factor 6 |
| 超家族 Superfamily superfamily | f.45.1 — Mitochondrial ATP synthase coupling factor 6 |
| 家族 Family family | f.45.1.1 — Mitochondrial ATP synthase coupling factor 6 |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 2clyA00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 2210 — |
| 结构域编号 domain_id | 2clyB00 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 280 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 2clyC01 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 280 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 200 — |
| 结构域编号 domain_id | 2clyD00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 2210 — |
| 结构域编号 domain_id | 2clyE00 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 280 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 2clyF01 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 280 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 200 — |