6yy0

bovine ATP synthase F1-peripheral stalk domain, state 1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase subunit alpha, mitochondrial

OrganismNot specified

UniProt P19483

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPA_BOVIN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–510; UniProt 44–553 Author chain B; PDBConstruct 1–510; UniProt 44–553 Author chain C; PDBConstruct 1–510; UniProt 44–553

ATP synthase subunit beta, mitochondrial

OrganismNot specified

UniProt P00829

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPB_BOVIN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–482; UniProt 47–528 Author chain E; PDBConstruct 1–482; UniProt 47–528 Author chain F; PDBConstruct 1–482; UniProt 47–528

ATP synthase subunit gamma, mitochondrial

OrganismNot specified

UniProt P05631

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPG_BOVIN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain G; PDBConstruct 1–273; UniProt 26–298

ATP synthase subunit delta, mitochondrial

OrganismNot specified

UniProt P05630

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPD_BOVIN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain H; PDBConstruct 1–146; UniProt 23–168

ATP synthase subunit epsilon, mitochondrial

OrganismNot specified

UniProt P05632

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5E_BOVIN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain I; PDBConstruct 1–50; UniProt 2–51

ATPase inhibitor, mitochondrial

Bos taurus

UniProt P01096

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATIF1_BOVIN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain J; PDBConstruct 1–60; UniProt 26–85

ATP synthase subunit O, mitochondrial

OrganismNot specified

UniProt P13621

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPO_BOVIN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain S; PDBConstruct 1–190; UniProt 24–213

ATP synthase F(0) complex subunit B1, mitochondrial

OrganismNot specified

UniProt P13619

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase subunit d, mitochondrial × 1 (P13620) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AT5F1_BOVIN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain b; PDBConstruct 1–214; UniProt 43–256

ATP synthase subunit d, mitochondrial

OrganismNot specified

UniProt P13620

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase-coupling factor 6, mitochondrial × 1 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5H_BOVIN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain d; PDBConstruct 1–160; UniProt 2–161

ATP synthase-coupling factor 6, mitochondrial

OrganismNot specified

UniProt P02721

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 ATP synthase subunit alpha, mitochondrial × 3 (P19483) ATP synthase subunit beta, mitochondrial × 3 (P00829) ATP synthase subunit gamma, mitochondrial × 1 (P05631) ATP synthase subunit delta, mitochondrial × 1 (P05630) ATP synthase subunit epsilon, mitochondrial × 1 (P05632) ATPase inhibitor, mitochondrial × 1 (P01096) ATP synthase subunit O, mitochondrial × 1 (P13621) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P13619) ATP synthase subunit d, mitochondrial × 1 (P13620) ADENOSINE-5'-TRIPHOSPHATE × 3 MAGNESIUM ION × 5 ADENOSINE-5'-DIPHOSPHATE × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5J_BOVIN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain h; PDBConstruct 1–76; UniProt 33–108

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6yy0
Deposition date deposition_date2020-05-04
Structure title titlebovine ATP synthase F1-peripheral stalk domain, state 1
Keywords keywordsATP synthase, mitochondria, mammalian, complex, HYDROLASE; HYDROLASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6yy0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6yy0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6yy0__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)49.65 Å
Rg (electron density)49.25 Å
Total Rg49.45 Å
Atom count61217
Residues3926
Excluded volume542340 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6yy0__assembly_1__model_1 tetradecameric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (14)

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7. Citations (1)