4b2q

Model of the yeast F1Fo-ATP synthase dimer based on subtomogram average

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL

OrganismNot specified

UniProt P07251

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPA_YEAST
Isoform —
PDB entities 1, 2
Chains and sequence ranges Author chain A; PDBConstruct 1–485; UniProt 61–545 Author chain C; PDBConstruct 1–485; UniProt 61–545 Author chain a; PDBConstruct 1–485; UniProt 61–545 Author chain c; PDBConstruct 1–485; UniProt 61–545 Author chain B; PDBConstruct 1–486; UniProt 60–545 Author chain b; PDBConstruct 1–486; UniProt 60–545

ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL

OrganismNot specified

UniProt P00830

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPB_YEAST
Isoform —
PDB entities 3, 4
Chains and sequence ranges Author chain D; PDBConstruct 1–470; UniProt 39–508 Author chain d; PDBConstruct 1–470; UniProt 39–508 Author chain E; PDBConstruct 1–473; UniProt 39–511 Author chain F; PDBConstruct 1–473; UniProt 39–511 Author chain e; PDBConstruct 1–473; UniProt 39–511 Author chain f; PDBConstruct 1–473; UniProt 39–511

ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL

OrganismNot specified

UniProt P38077

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPG_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain G; PDBConstruct 1–278; UniProt 34–311 Author chain g; PDBConstruct 1–278; UniProt 34–311

ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL

OrganismNot specified

UniProt Q12165

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPD_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain H; PDBConstruct 1–132; UniProt 29–160 Author chain h; PDBConstruct 1–132; UniProt 29–160

ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL

OrganismNot specified

UniProt P21306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5E_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain I; PDBConstruct 1–59; UniProt 2–60 Author chain i; PDBConstruct 1–59; UniProt 2–60

ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL

OrganismNot specified

UniProt P61829

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP9_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain J; PDBConstruct 1–76; UniProt 1–76 Author chain K; PDBConstruct 1–76; UniProt 1–76 Author chain L; PDBConstruct 1–76; UniProt 1–76 Author chain M; PDBConstruct 1–76; UniProt 1–76 Author chain N; PDBConstruct 1–76; UniProt 1–76 Author chain O; PDBConstruct 1–76; UniProt 1–76 Author chain P; PDBConstruct 1–76; UniProt 1–76 Author chain Q; PDBConstruct 1–76; UniProt 1–76 Author chain R; PDBConstruct 1–76; UniProt 1–76 Author chain S; PDBConstruct 1–76; UniProt 1–76 Author chain j; PDBConstruct 1–76; UniProt 1–76 Author chain k; PDBConstruct 1–76; UniProt 1–76 Author chain l; PDBConstruct 1–76; UniProt 1–76 Author chain m; PDBConstruct 1–76; UniProt 1–76 Author chain n; PDBConstruct 1–76; UniProt 1–76 Author chain o; PDBConstruct 1–76; UniProt 1–76 Author chain p; PDBConstruct 1–76; UniProt 1–76 Author chain q; PDBConstruct 1–76; UniProt 1–76 Author chain r; PDBConstruct 1–76; UniProt 1–76 Author chain s; PDBConstruct 1–76; UniProt 1–76

ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL

OrganismNot specified

UniProt P13619

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AT5F1_BOVIN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain T; PDBConstruct 1–129; UniProt 121–249 Author chain t; PDBConstruct 1–129; UniProt 121–249

ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL

OrganismNot specified

UniProt P13620

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5H_BOVIN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain U; PDBConstruct 1–120; UniProt 5–124 Author chain u; PDBConstruct 1–120; UniProt 5–124

ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL

OrganismNot specified

UniProt P02721

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL × 2 (P13621) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5J_BOVIN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain V; PDBConstruct 1–66; UniProt 36–101 Author chain v; PDBConstruct 1–66; UniProt 36–101

ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL

OrganismNot specified

UniProt P13621

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 46 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 4 (P07251) ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 2 (P07251) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 2 (P00830) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 4 (P00830) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 2 (P38077) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 2 (Q12165) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 2 (P21306) ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL × 20 (P61829) ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL × 2 (P13619) ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL × 2 (P13620) ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL × 2 (P02721) ADENOSINE-5'-TRIPHOSPHATE × 6 MAGNESIUM ION × 10 ADENOSINE-5'-DIPHOSPHATE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPO_BOVIN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain W; PDBConstruct 1–120; UniProt 24–143 Author chain w; PDBConstruct 1–120; UniProt 24–143

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4b2q
Deposition date deposition_date2012-07-17
Structure title titleModel of the yeast F1Fo-ATP synthase dimer based on subtomogram average
Keywords keywordsHYDROLASE, SUBTOMOGRAM AVERAGE; HYDROLASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4b2q__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4b2q__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4b2q__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)137.30 Å
Total Rg137.30 Å
Atom count70304
Residues9026
Excluded volume1233100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4b2q__assembly_1__model_1 46-meric (46) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (15)

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7. Citations (1)