6b2z

Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase subunit c, mitochondrial

OrganismNot specified

UniProt P61829

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP9_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–76; UniProt 1–76 Author chain 1; PDBConstruct 1–76; UniProt 1–76 Author chain 2; PDBConstruct 1–76; UniProt 1–76 Author chain 3; PDBConstruct 1–76; UniProt 1–76 Author chain 4; PDBConstruct 1–76; UniProt 1–76 Author chain 5; PDBConstruct 1–76; UniProt 1–76 Author chain 6; PDBConstruct 1–76; UniProt 1–76 Author chain 7; PDBConstruct 1–76; UniProt 1–76 Author chain 8; PDBConstruct 1–76; UniProt 1–76 Author chain 9; PDBConstruct 1–76; UniProt 1–76 Author chain B; PDBConstruct 1–76; UniProt 1–76 Author chain C; PDBConstruct 1–76; UniProt 1–76 Author chain D; PDBConstruct 1–76; UniProt 1–76 Author chain E; PDBConstruct 1–76; UniProt 1–76 Author chain F; PDBConstruct 1–76; UniProt 1–76 Author chain G; PDBConstruct 1–76; UniProt 1–76 Author chain H; PDBConstruct 1–76; UniProt 1–76 Author chain I; PDBConstruct 1–76; UniProt 1–76 Author chain J; PDBConstruct 1–76; UniProt 1–76 Author chain K; PDBConstruct 1–76; UniProt 1–76

ATP synthase protein 8

OrganismNot specified

UniProt P00856

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP8_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 1–48; UniProt 1–48 Author chain L; PDBConstruct 1–48; UniProt 1–48

ATP synthase subunit a

OrganismNot specified

UniProt P00854

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP6_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain M; PDBConstruct 1–249; UniProt 11–259 Author chain a; PDBConstruct 1–249; UniProt 11–259

ATP synthase subunit b

OrganismNot specified

UniProt P05626

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPF_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain N; PDBConstruct 1–209; UniProt 36–244 Author chain b; PDBConstruct 1–209; UniProt 36–244

ATP synthase subunit d, mitochondrial

OrganismNot specified

UniProt P30902

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP7_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain O; PDBConstruct 1–173; UniProt 2–174 Author chain d; PDBConstruct 1–173; UniProt 2–174

ATP synthase subunit f, mitochondrial

OrganismNot specified

UniProt Q06405

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPK_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain Q; PDBConstruct 1–95; UniProt 7–101 Author chain f; PDBConstruct 1–95; UniProt 7–101

ATP synthase subunit j, mitochondrial

OrganismNot specified

UniProt P81450

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit k, mitochondrial × 2 (P81451) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP18_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain S; PDBConstruct 1–59; UniProt 1–59 Author chain i; PDBConstruct 1–59; UniProt 1–59

ATP synthase subunit k, mitochondrial

OrganismNot specified

UniProt P81451

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 38 ATP synthase subunit c, mitochondrial × 20 (P61829) ATP synthase protein 8 × 2 (P00856) ATP synthase subunit a × 2 (P00854) ATP synthase subunit b × 2 (P05626) ATP synthase subunit d, mitochondrial × 2 (P30902) ATP synthase subunit e, mitochondrial × 2 ATP synthase subunit f, mitochondrial × 2 (Q06405) ATP synthase subunit g × 2 ATP synthase subunit j, mitochondrial × 2 (P81450) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP19_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain T; PDBConstruct 1–68; UniProt 1–68 Author chain k; PDBConstruct 1–68; UniProt 1–68

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6b2z
Deposition date deposition_date2017-09-20
Structure title titleCryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase
Keywords keywordsComplex, Dimer, Mitochondrial inner membrane, Proton translocation, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6b2z__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6b2z__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6b2z__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)54.66 Å
Rg (electron density)54.49 Å
Total Rg54.74 Å
Atom count21436
Residues2996
Excluded volume392970 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6b2z__assembly_1__model_1 38-meric (38) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (10)

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6. Fold Classification (SCOP + CATH) 20 domains

CATH v4.4 (20 domains)

Domain ID domain_id6b2z000
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z100
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z200
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z300
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z400
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z500
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z600
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z700
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z800
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2z900
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zC00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zE00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zF00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zG00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zH00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zI00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zJ00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
Domain ID domain_id6b2zK00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology20 — F1FO ATP Synthase
Homologous superfamily homologous superfamily10 — F1F0 ATP synthase subunit C
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7. Citations (1)