← Back to search

9w2t

Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles

Method: ELECTRON MICROSCOPY D_max: 121.5 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9w2t
deposition_date	2025-07-28
title	Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
keywords	ATP synthase, FoF1-ATPase, submitochondrial particles, MOTOR PROTEIN; MOTOR PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	37.28 Å
rg_electron	36.67 Å
i0	252316000.00
molecular_weight	142180.0 kDa
excluded_volume	184080 Å³
envelope_volume	264440 Å³
shell_volume	59080 Å³
envelope_diameter	125.9 Å
shell_rg	43.61 Å
envelope_rg	36.66 Å
shape_rg	36.68 Å
total_rg	37.18 Å
total_atoms	10026
n_residues	1307
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	121.5 Å
rg_real	37.20 Å
rg_real_error	0.99 Å
i0_real	2.5230e+08
i0_real_error	4.1840e+06
rg_reciprocal	37.25 Å
i0_reciprocal	252300000.0000
total_estimate	0.6624
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	43.4 Å
skewness	0.273
kurtosis	-0.430
angular_range	— – 0.2100 Å⁻¹
current_alpha	0.0000
highest_alpha	52530000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.897; Stabil: 1.000; Sysdev: 0.003; Positv: 1.000; Valcen: 0.995; Smooth: 0.911

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (10)

Entity 1 polymer

description	ATP synthase F(0) complex subunit 8
formula_weight	4901.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	8
atom_count	10026

MPQLDTSTWLTMILSMFLTLFIIFQLKVSKHNFYHNPELTP

Entity 2 polymer

description	ATP synthase F(0) complex subunit C1, mitochondrial
formula_weight	7653.0 kDa
src_method	nat
entity_count	8

Polymer

type	polypeptide(L)
strand_id	K,L,M,N,O,P,Q,R

DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM

Entity 3 polymer

description	ATP synthase F(0) complex subunit a
formula_weight	24556.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	a

ENLFTSFITPVILGLPLVTLIVLFPSLLFPTSNRLVSNRFVTLQQWMLQLVSKQMMSIHNSKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLALMSISTTTALITFTILILLTILEFAVAMIQAYVFTLLVSLYLHDNT

Entity 4 polymer

description	ATP synthase peripheral stalk subunit b, mitochondrial
formula_weight	12462.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	b

PVPPLPEHGGKVRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEK

Entity 5 polymer

description	ATP synthase peripheral stalk subunit d, mitochondrial
formula_weight	6392.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	d

TRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIET

Entity 6 polymer

description	ATP synthase F(0) complex subunit e, mitochondrial
formula_weight	8106.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	e

PPVQVSPLIKLGRYSALFLGMAYGAKRYNYLKPRAEEERRLAAEEKKKRDEQKRIERELAEAQEDTILK

Entity 7 polymer

description	ATP synthase F(0) complex subunit f, mitochondrial
formula_weight	9827.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	f

PLKEKKLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSIAGLSMVLAAYVFLNYCRSYKELKHERLRKYH

Entity 8 polymer

description	ATP synthase F(0) complex subunit g, mitochondrial
formula_weight	8896.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	g

TYSKPRLATFWYYAKVELVPPTPAEIPTAIQSLKKIINSAKTGSFKQLTVKEALLNGLVATEVWMWFYVGEIIGKRGII

Entity 9 polymer

description	ATP synthase F(0) complex subunit j, mitochondrial
formula_weight	5687.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	j

LQSLIKKVWIPMKPYYTQAYQEIWVGTGLMAYIVYKIRSADKRSKALK

Entity 10 polymer

description	ATP synthase F(0) complex subunit k, mitochondrial
formula_weight	4124.9 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	k

TGIKKYFNSYTLTGRMNCVLATYGSIALIVLYFKLR

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.100 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	4.10 Å
resolution_method	—
num_particles	111365

fit	/app/data/saxs_computation/w2/9w2t/9w2t.fit
pddf	/app/data/pr_computation/w2/9w2t/9w2t.pr.out
profile	/app/data/saxs_computation/w2/9w2t/9w2t.dat

Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (10)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 polymer

Polymer

Entity 6 polymer

Polymer

Entity 7 polymer

Polymer

Entity 8 polymer

Polymer

Entity 9 polymer

Polymer

Entity 10 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)