ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL
OrganismNot specified
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 9 PDB declaration: nonameric（9） Consistent with protein copy count | Chain A； UniProt 1–553 Chain B； UniProt 1–553 Chain C； UniProt 1–553 | Not recorded | ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 3 （P00829） ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 1 （P05631） ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 1 （P05630） ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 1 （P05632） | X-RAY DIFFRACTION X-ray crystallization conditions：pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000 | Resolution 5.00 Å |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 2W6H | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1BMF BOVINE MITOCHONDRIAL F1-ATPASE Deposited 1996-03-13 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.85 Å |
| 1COW BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B Deposited 1996-05-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
45–553（509 aa）
Chain B
45–553（509 aa）
Chain C
45–553（509 aa）
|
Not recorded | MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AUR AUROVERTIN B × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.10 Å R-free 0.280 |
| 1E1Q BOVINE MITOCHONDRIAL F1-ATPASE AT 100K Deposited 2000-05-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；pH 8.00
|
Resolution 2.61 Å R-free 0.280 |
| 1E1R BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE Deposited 2000-05-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AF3 ALUMINUM FLUORIDE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；pH 8.00
|
Resolution 2.50 Å R-free 0.282 |
| 1E79 Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide) Deposited 2000-08-25 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 GOL GLYCEROL × 1 DCW DICYCLOHEXYLUREA × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；pH 7.00
|
Resolution 2.40 Å R-free 0.281 |
| 1EFR BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN Deposited 1996-05-24 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
45–553（509 aa）
Chain B
45–553（509 aa）
Chain C
45–553（509 aa）
|
Not recorded | MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；PH 8.2
|
Resolution 3.10 Å R-free 0.220 |
| 1H8E (ADP.AlF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied) Deposited 2001-02-02 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 6 MG MAGNESIUM ION × 6 GOL GLYCEROL × 4 ALF TETRAFLUOROALUMINATE ION × 2 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；CRYSTALS WERE GROWN IN THE PRESENCE OF AZIDE, A KNOWN INHIBITOR, BUT THIS HAS NOT BEEN LOCATED IN THE STRUCTURE., pH 8.00
|
Resolution 2.00 Å R-free 0.264 |
| 1H8H Bovine mitochondrial F1-ATPase crystallised in the presence of 5mm AMPPNP Deposited 2001-02-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 1 ADP ADENOSINE-5'-DIPHOSPHATE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；CRYSTALS WERE GROWN IN THE PRESENCE OF AZIDE, A KNOWN INHIBITOR, BUT THIS HAS NOT BEEN LOCATED IN THE STRUCTURE., pH 8.00
|
Resolution 2.90 Å R-free 0.292 |
| 1NBM THE STRUCTURE OF BOVINE F1-ATPASE COVALENTLY INHIBITED WITH 4-CHLORO-7-NITROBENZOFURAZAN Deposited 1998-04-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | MG MAGNESIUM ION × 5 ATP ADENOSINE-5'-TRIPHOSPHATE × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；50MM TRIS-HCL, PH7.5, 200MM SODIUM CHLORIDE, 20MM MAGNESIUM SULPHATE, 1MM EDTA, 0.002% (W/V) PHENYL METHYLSULPHONYL FLUORIDE, 0.02%(W/V) SODIUM AZIDE, 10.5% (W/V) PEG MME 5000, 250UM AMP-PNP AND 5UM ADP.
|
Resolution 3.00 Å R-free 0.297 |
| 1OHH BOVINE MITOCHONDRIAL F1-ATPASE complexed with the inhibitor protein IF1 Deposited 2003-05-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.6；PROTEIN 20MG/ML IN 100MM PIPES-NAOH PH6.6, 40MM MGSO4, 0.04% NA AZIDE, 10% GLYCEROL, 0.002% PMSF. DROPS EQUAL VOLUME OF PROTEIN AND 10MM AMP-PNP, 300MM NACL, 16% PEG 4000, 5MM SPERMIDINE. BATCH METHOD., pH 6.60
|
Resolution 2.80 Å R-free 0.280 |
| 1QO1 Molecular Architecture of the Rotary Motor in ATP Synthase from Yeast Mitochondria Deposited 1999-11-01 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric |
Chain A
67–553（487 aa）
Chain B
67–553（487 aa）
Chain C
62–553（492 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；0.1 M TRIS/CL PH8.0, 12% PEG 6000, 150 MM NACL, 1 MM AMP-PNP, 40 MICROM ADP, 1 MM DTT, 0.02% NAN3, MIXED 1:1 WITH PROTEIN SOLUTION UNDER PARAFFIN OIL IN MICROBATCH PLATE., pH 8.00
|
Resolution 3.90 Å |
| 1W0J Beryllium fluoride inhibited bovine F1-ATPase Deposited 2004-06-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 5 MG MAGNESIUM ION × 5 GOL GLYCEROL × 4 BEF BERYLLIUM TRIFLUORIDE ION × 2 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；CRYSTALS WERE GROWN IN THE PRESENCE OF AZIDE, A KNOWN INHIBITOR, BUT THIS HAS NOT BEEN LOCATED IN THE STRUCTURE., pH 8.20
|
Resolution 2.20 Å R-free 0.236 |
| 1W0K ADP inhibited bovine F1-ATPase Deposited 2004-06-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 5 MG MAGNESIUM ION × 5 GOL GLYCEROL × 3 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；CRYSTALS WERE GROWN IN THE PRESENCE OF AZIDE, A KNOWN INHIBITOR, BUT THIS HAS NOT BEEN LOCATED IN THE STRUCTURE., pH 8.20
|
Resolution 2.85 Å R-free 0.278 |
| 2CK3 Azide inhibited bovine F1-ATPase Deposited 2006-04-10 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 250 UM AMP-PNP, 5 UM ADP, 3 MM NAN3, 0.004% (W/V) PHENYLMETHYLSULFONYL FLUORIDE AND 9% (W/V) POLYETHYLENE GLYCOL 6000.
|
Resolution 1.95 Å R-free 0.226 |
| 2JDI Ground state structure of F1-ATPase from bovine heart mitochondria (Bovine F1-ATPase crystallised in the absence of azide) Deposited 2007-01-09 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Fragment：RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 250 UM AMP-PNP, 5 UM ADP, 0.004% (W/V) PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 1.90 Å R-free 0.220 |
| 2JIZ The Structure of F1-ATPase inhibited by resveratrol. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain B
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain C
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 STL RESVERATROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.30 Å R-free 0.217 |
| 2JIZ The Structure of F1-ATPase inhibited by resveratrol. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain I
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain J
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 STL RESVERATROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.30 Å R-free 0.217 |
| 2JJ1 The Structure of F1-ATPase inhibited by piceatannol. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain B
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain C
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 PIT PICEATANNOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.70 Å R-free 0.269 |
| 2JJ1 The Structure of F1-ATPase inhibited by piceatannol. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain I
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain J
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 PIT PICEATANNOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.70 Å R-free 0.269 |
| 2JJ2 The Structure of F1-ATPase inhibited by quercetin. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain B
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain C
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.40 Å R-free 0.238 |
| 2JJ2 The Structure of F1-ATPase inhibited by quercetin. Deposited 2007-07-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain H
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain I
45–553（509 aa）
Fragment：RESIDUES 44-553
Chain J
45–553（509 aa）
Fragment：RESIDUES 44-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 GOL GLYCEROL × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AZI AZIDE ION × 1 PO4 PHOSPHATE ION × 1 QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；pH 8.2
|
Resolution 2.40 Å R-free 0.238 |
| 2JMX OSCP-NT (1-120) in complex with N-terminal (1-25) alpha subunit from F1-ATPase Deposited 2006-12-12 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
44–68（25 aa）
Fragment：ATP synthase subunit alpha heart isoform, residues 1-25
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6.5；300 K；Ionic strength (raw mmCIF value) 0.5；Pressure ambient
NMR sample composition
0.5 mM [U-99% 13C, U-99% 15N] oscp-nt, 1.5 mM alpha-nt, 20 mM sodium phosphate, pH 6.5, 0.5 M NaCl, 0.001% PMSF 95% H2O, 5% D2O | 95% H2O/5% D2O
|
Resolution not provided |
| 2W6E Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration:hydration state 1. Deposited 2008-12-18 | Different oligomeric state Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
1–553（553 aa）
Chain B
1–553（553 aa）
Chain C
1–553（553 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 6.50 Å R-free 0.285 |
| 2W6F Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 2. Deposited 2008-12-18 | Different oligomeric state Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
1–553（553 aa）
Chain B
1–553（553 aa）
Chain C
1–553（553 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 6.00 Å R-free 0.343 |
| 2W6G Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 3. Deposited 2008-12-18 | Different oligomeric state Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain A
1–553（553 aa）
Chain B
1–553（553 aa）
Chain C
1–553（553 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 6.00 Å |
| 2W6I Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 4B. Deposited 2008-12-18 | Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
1–553（553 aa）
Chain B
1–553（553 aa）
Chain C
1–553（553 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 4.00 Å R-free 0.300 |
| 2W6J Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 5. Deposited 2008-12-18 | Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
1–553（553 aa）
Chain B
1–553（553 aa）
Chain C
1–553（553 aa）
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 1 MM ADP, 1 MM ALCL3, 6 MM NAF 0.004% (W/V)PHENYLMETHYLSULFONYL FLUORIDE AND 12% (W/V) POLYETHYLENE GLYCOL 6000
|
Resolution 3.84 Å |
| 2WSS The structure of the membrane extrinsic region of bovine ATP synthase Deposited 2009-09-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 13 PDB declaration: tridecameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；MICROBATCH UNDER OIL
|
Resolution 3.20 Å R-free 0.271 |
| 2WSS The structure of the membrane extrinsic region of bovine ATP synthase Deposited 2009-09-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 12 PDB declaration: dodecameric |
Chain J
44–553（510 aa）
Chain K
44–553（510 aa）
Chain L
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；MICROBATCH UNDER OIL
|
Resolution 3.20 Å R-free 0.271 |
| 2XND Crystal structure of bovine F1-c8 sub-complex of ATP Synthase Deposited 2010-08-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 17 PDB declaration: heptadecameric |
Chain A
62–553（492 aa）
Fragment：RESIDUES 62-553
Chain B
62–553（492 aa）
Fragment：RESIDUES 62-553
Chain C
62–553（492 aa）
Fragment：RESIDUES 62-553
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 5 GOL GLYCEROL × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；CRYSTALS WERE GROWN UNDER OIL BY MIXING EQUAL VOLUMES OF PROTEIN (10MG/ML IN 20MM TRIS PH 8.0, 10% GLYCEROL, 1MM ADP, 1MM AMP-PNP, 2MM MGSO4, 0.02% NAN3, 5.7MM TDM) AND PRECIPITANT SOLUTION (50MM HEPES PH 7.0, 14% PEG4600, 50MM K2HPO4)
|
Resolution 3.50 Å R-free 0.304 |
| 4ASU F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site Deposited 2012-05-03 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 6 MG MAGNESIUM ION × 5 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.60 Å R-free 0.289 |
| 4TSF The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase Deposited 2014-06-18 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: Nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8.2；295 K；Tris-HCl, PEG 4000, magnesium chloride, EDTA, NaCl, spermidine
|
Resolution 3.20 Å R-free 0.272 |
| 4TT3 The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase Deposited 2014-06-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 10 PDB declaration: Decameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 GOL GLYCEROL × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8.2；295 K；PEG 4000, Tris-HCl, magnesium chloride, EDTA, ATP, NaCl, spermidine
|
Resolution 3.21 Å R-free 0.283 |
| 4YXW Bovine heart mitochondrial F1-ATPase inhibited by AMP-PNP and ADP in the presence of thiophosphate. Deposited 2015-03-23 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 9 PDB declaration: nonameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 5 CL CHLORIDE ION × 1 TS6 Monothiophosphate × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 8.2；295 K；PEG 6000, sodium chloride, magnesium chloride, Tris-HCl, AMP-PNP, ADP, sodium monothiophosphate
|
Resolution 3.10 Å R-free 0.273 |
| 4Z1M Bovine F1-ATPase inhibited by three copies of the inhibitor protein IF1 crystallised in the presence of thiophosphate. Deposited 2015-03-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 10 PDB declaration: decameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 GOL GLYCEROL × 2 CL CHLORIDE ION × 11 ADP ADENOSINE-5'-DIPHOSPHATE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；295 K；Tris.HCl, MgCl2, EDTA, sodium monothiophosphate, ATP NaCl, spermidine, PEG 4000
|
Resolution 3.30 Å R-free 0.275 |
| 5ARA Bovine mitochondrial ATP synthase state 1a Deposited 2015-09-24 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 7.40 Å |
| 5ARE Bovine mitochondrial ATP synthase state 1b Deposited 2015-09-24 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 6.70 Å |
| 5ARH Bovine mitochondrial ATP synthase state 2a Deposited 2015-09-24 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 7.20 Å |
| 5ARI Bovine mitochondrial ATP synthase state 2b Deposited 2015-09-24 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 7.40 Å |
| 5FIJ Bovine mitochondrial ATP synthase state 2c Deposited 2015-09-28 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 7.40 Å |
| 5FIK Bovine mitochondrial ATP synthase state 3a Deposited 2015-09-28 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 6.40 Å |
| 5FIL Bovine mitochondrial ATP synthase state 3b Deposited 2015-09-28 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 22 PDB declaration: 22-meric |
Chain A
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain B
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
Chain C
44–553（510 aa）
Fragment：UNP RESIDUES 44-553
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) GLYCEROL, 0.05% (WT/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3；pH 7.2；20 MM TRIS-HCL, 100 MM NACL, 10% (V/V) GLYCEROL, 0.05% (WT/V) DODECYLMALTOSIDE, 2 MM ATP, 0.02% (WT/V) NAN3
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 27 SECONDS BEFORE PLUNGING,
|
Resolution 7.10 Å |
| 6YY0 bovine ATP synthase F1-peripheral stalk domain, state 1 Deposited 2020-05-04 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 3.23 Å |
| 6Z1R bovine ATP synthase F1-peripheral stalk domain, state 2 Deposited 2020-05-14 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 21 PDB declaration: 21-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 3.29 Å |
| 6Z1U bovine ATP synthase F1c8-peripheral stalk domain, state 3 Deposited 2020-05-14 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 21 PDB declaration: 21-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 3.47 Å |
| 6ZIQ bovine ATP synthase stator domain, state 1 Deposited 2020-06-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 15 PDB declaration: pentadecameric |
Chain C
44–553（510 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 4.33 Å |
| 6ZIT bovine ATP synthase Stator domain, state 2 Deposited 2020-06-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 15 PDB declaration: pentadecameric |
Chain C
44–553（510 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 3.49 Å |
| 6ZIU bovine ATP synthase stator domain, state 3 Deposited 2020-06-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric |
Chain C
44–553（510 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；Th sample was allowed to penetrate through the holey grid support and to distribute to both sides of the grid surface for ~15sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 6.02 Å |
| 6ZPO bovine ATP synthase monomer state 1 (combined) Deposited 2020-07-09 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 29 PDB declaration: 29-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 CDL CARDIOLIPIN × 3 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 4.00 Å |
| 6ZQM bovine ATP synthase monomer state 2 (combined) Deposited 2020-07-10 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 29 PDB declaration: 29-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 CDL CARDIOLIPIN × 3 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 3.29 Å |
| 6ZQN bovine ATP synthase monomer state 3 (combined) Deposited 2020-07-10 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 29 PDB declaration: 29-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 3 CDL CARDIOLIPIN × 3 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE；The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
|
Resolution 4.00 Å |
| 7AJB bovine ATP synthase dimer state1:state1 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.20 Å |
| 7AJC bovine ATP synthase dimer state1:state2 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 11.90 Å |
| 7AJD bovine ATP synthase dimer state1:state3 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.00 Å |
| 7AJE bovine ATP synthase dimer state2:state1 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.40 Å |
| 7AJF bovine ATP synthase dimer state2:state2 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.45 Å |
| 7AJG bovine ATP synthase dimer state2:state3 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 10.70 Å |
| 7AJH bovine ATP synthase dimer state3:state1 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.70 Å |
| 7AJI bovine ATP synthase dimer state3:state2 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 11.40 Å |
| 7AJJ bovine ATP synthase dimer state3:state3 Deposited 2020-09-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 58 PDB declaration: 58-meric |
Chain A
44–553（510 aa）
Chain AA
44–553（510 aa）
Chain AB
44–553（510 aa）
Chain AC
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | CDL CARDIOLIPIN × 6 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 13.10 Å |
| 9W2R Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1) Deposited 2025-07-28 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 29 PDB declaration: 29-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 4 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 9W2S Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2) Deposited 2025-07-28 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 29 PDB declaration: 29-meric |
Chain A
44–553（510 aa）
Chain B
44–553（510 aa）
Chain C
44–553（510 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.00 Å |
58 other PDB entries and 62 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | ATPA1_BOVIN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–553； UniProt 1–553 Author chain B； PDBConstruct 1–553； UniProt 1–553 Author chain C； PDBConstruct 1–553； UniProt 1–553 |
