2n7j

Sidechain chi1 distribution in B3 domain of protein G from extensive sets of residual dipolar couplings

Method: SOLUTION NMR Dmax: 34.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Immunoglobulin G-binding protein G

;Streptococcus sp. 'group G' ;

UniProt P06654

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 299–352 Fragment:residues 299-352 No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.5;293 K;Ionic strength (raw mmCIF value) 0.05;Pressure ambient NMR sample composition:2.5 mM [U-100% 13C; U-100% 15N] wild-type GB3, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:1.3 mM [U-13C; U-15N] GB3-K19A/V42E/D47K, 100% D2O | 100% D2O NMR sample composition:1.3 mM [U-100% 13C; U-100% 15N; U-75% 2H] GB3-K19A/V42E/D47K, 100% D2O | 100% D2O NMR sample composition:1.3 mM [U-13C; U-15N; U-2H] GB3-K19A/V42E/D47K, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:2.0 mM [U-100% 13C; U-100% 15N] GB3-K4A/K19E/V42E, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:2.0 mM [U-100% 13C; U-100% 15N] GB3-K4A/K19E/V42E, 100% D2O | 100% D2O NMR sample composition:2.0 mM [U-100% 13C; U-100% 15N; U-75% 2H] GB3-K4A/K19E/V42E, 100% D2O | 100% D2O NMR sample composition:2.0 mM [U-13C; U-15N; U-2H] GB3-K4A/K19E/V42E, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:2.5 mM [U-100% 13C; U-100% 15N] wild-type GB3, 100% D2O | 100% D2O NMR sample composition:2.5 mM [U-100% 13C; U-100% 15N; U-75% 2H] GB3-K19A/V42E/D47K, 100% D2O | 100% D2O NMR sample composition:2.5 mM [U-13C; U-15N; U-2H] wild-type GB3, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:0.9 mM [U-13C; U-15N] GB3-K4A/K19E/V42E-CHis6, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:0.9 mM [U-13C; U-15N] GB3-K4A/K19E/V42E-CHis6, 100% D2O | 100% D2O NMR sample composition:0.9 mM [U-100% 13C; U-100% 15N; U-75% 2H] GB3-K4A/K19E/V42E-CHis6, 100% D2O | 100% D2O NMR sample composition:0.9 mM [U-13C; U-15N; U-2H] GB3-K4A/K19E/V42E-CHis6, 95% H2O/5% D2O | 95% H2O/5% D2O NMR sample composition:1.3 mM [U-13C; U-15N] GB3-K19A/V42E/D47K, 95% H2O/5% D2O | 95% H2O/5% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

48 other PDB entries and 54 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SPG1_STRSG
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–56; UniProt 299–352

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2n7j

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2n7j
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2n7j
Deposition date deposition_date2015-09-12
Structure title titleSidechain chi1 distribution in B3 domain of protein G from extensive sets of residual dipolar couplings
Keywords keywordsSIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier10.89
Radius of gyration Rg (electron density) rg_electron10.86
Forward intensity I(0) i0215619000.00
Molecular weight molecular_weight123780.0 kDa
Excluded volume excluded_volume154550 ų
Envelope volume envelope_volume10329 ų
Hydration-shell volume shell_volume8117 ų
Envelope diameter envelope_diameter39.5
Shell Rg shell_rg16.46
Envelope Rg envelope_rg11.67
Shape Rg shape_rg10.78
Total Rg total_rg11.29
Total atoms total_atoms17220
Residues n_residues1120
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax34.1
Rg (real space) rg_real10.83
Rg uncertainty (real space) rg_real_error0.23
I(0) (real space) i0_real2.1560e+08
I(0) uncertainty (real space) i0_real_error2.1480e+06
Rg (reciprocal space) rg_reciprocal10.83
I(0) (reciprocal space) i0_reciprocal215600000.0000
Solution quality estimate total_estimate0.7805
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary14.2
Skewness Skewness skewness0.062
Kurtosis Kurtosis kurtosis-0.415
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha47830.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.716; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2n7ja1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.7 — Immunoglobulin-binding domains
Family Family familyd.15.7.1 — Immunoglobulin-binding domains
Domain ID domain_idd2n7ja2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (1 domains)

Domain ID domain_id2n7jA00
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily10

8. Citations (1)

9. Files and Curves (10)