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2zfe

Crystal structure of bacteriorhodopsin-xenon complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Bacteriorhodopsin

OrganismNot specified

UniProt P02945

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Homooligomer Protein 3 其他Polymer 3 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose × 3 RETINAL × 3 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE × 3 2,3-DI-PHYTANYL-GLYCEROL × 3 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL × 9 XENON × 3 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1bct 1bha 1bhb 1jv6 1jv7 1kme 1kme 1l0m 1mgy 1pxr 1pxr 1pxs

79 assemblies; showing the first 12

Homodimer
3utv 3utw 3utx 3uty 4hwl 7vso

6 assemblies

Homotetramer

None

Other homooligomers
1ap9 1at9 1bm1 1brd 1brx 1c3w 1c8r 1c8s 1cwq 1e0p 1f4z 1f50

104 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
1brr 1dze 1iw6 1iw9 1ixf 1qm8 1ucq 1x0k 1x0s 2zfe 2zzl 3vhz

13 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name BACR_HALSA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–262； UniProt 1–262

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2zfe
Deposition date deposition_date2007-12-31
Structure title titleCrystal structure of bacteriorhodopsin-xenon complex
Keywords keywords;hydrophobic cavity, Chromophore, Hydrogen ion transport, Ion transport, Membrane, Photoreceptor protein, Pyrrolidone carboxylic acid, Receptor, Retinal protein, Sensory transduction, Transmembrane, Transport, PROTON TRANSPORT ;; PROTON TRANSPORT
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2zfe__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2zfe__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2zfe__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）26.58 Å
Rg (electron density)25.11 Å
Total Rg26.41 Å
Atom count6177
Residues681
Excluded volume118430 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2zfe__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2zfea_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.13 — Class A G protein-coupled receptor (GPCR)-like
Superfamily Superfamily superfamilyf.13.1 — Class A G protein-coupled receptor (GPCR)-like
Family Family familyf.13.1.1 — Bacteriorhodopsin-like

CATH v4.4 (1 domains)

Domain ID domain_id2zfeA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1070 — Rhopdopsin 7-helix transmembrane proteins
Homologous superfamily homologous superfamily10 — Rhodopsin 7-helix transmembrane proteins
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7. Citations (1)