3a0h

Crystal structure of I-substituted Photosystem II complex

Method: X-RAY DIFFRACTION Dmax: 193.1 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Photosystem Q(B) protein

物种未注明

UniProt P51765

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 A; UniProt 1–344 链 a; UniProt 1–344 未记录 Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 40 个其他 PDB 条目、40 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBA_THEVL
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–344; UniProt 1–344 作者链 a; PDB构建体 1–344; UniProt 1–344

Cytochrome b559 subunit alpha

物种未注明

UniProt P12238

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 E; UniProt 2–84 链 e; UniProt 2–84 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 46 个其他 PDB 条目、53 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBE_THEVL
Isoform
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–83; UniProt 2–84 作者链 e; PDB构建体 1–83; UniProt 2–84

Cytochrome b559 subunit beta

物种未注明

UniProt P12239

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 F; UniProt 2–45 链 f; UniProt 2–45 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 46 个其他 PDB 条目、53 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBF_THEVL
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–44; UniProt 2–45 作者链 f; PDB构建体 1–44; UniProt 2–45

Photosystem II reaction center protein J

物种未注明

UniProt Q7DGD4

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 J; UniProt 1–40 链 j; UniProt 1–40 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 42 个其他 PDB 条目、48 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBJ_THEVL
Isoform
PDB实体 9
链与序列区间 作者链 J; PDB构建体 1–40; UniProt 1–40 作者链 j; PDB构建体 1–40; UniProt 1–40

Photosystem II reaction center protein L

物种未注明

UniProt P12241

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 L; UniProt 1–37 链 l; UniProt 1–37 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 45 个其他 PDB 条目、51 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBL_THEVL
Isoform
PDB实体 11
链与序列区间 作者链 L; PDB构建体 1–37; UniProt 1–37 作者链 l; PDB构建体 1–37; UniProt 1–37

Photosystem II reaction center protein T

物种未注明

UniProt P12313

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 T; UniProt 1–30 链 t; UniProt 1–30 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II 12 kDa extrinsic protein × 2 Cytochrome c-550 × 2 (P0A387) Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 45 个其他 PDB 条目、51 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 PSBT_THEVL
Isoform
PDB实体 14
链与序列区间 作者链 T; PDB构建体 1–30; UniProt 1–30 作者链 t; PDB构建体 1–30; UniProt 1–30

Cytochrome c-550

物种未注明

UniProt P0A387

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 40 PDB 声明:40-meric(40) 与蛋白拷贝数一致 链 V; UniProt 27–163 链 v; UniProt 27–163 未记录 Photosystem Q(B) protein × 2 (P51765) Photosystem II core light harvesting protein × 2 Photosystem II CP43 protein × 2 Photosystem II D2 protein × 2 Cytochrome b559 subunit alpha × 2 (P12238) Cytochrome b559 subunit beta × 2 (P12239) Photosystem II reaction center protein H × 2 Photosystem II reaction center protein I × 2 Photosystem II reaction center protein J × 2 (Q7DGD4) Photosystem II reaction center protein K × 2 Photosystem II reaction center protein L × 2 (P12241) Photosystem II reaction center protein M × 2 Photosystem II manganese-stabilizing polypeptide × 2 Photosystem II reaction center protein T × 2 (P12313) Photosystem II 12 kDa extrinsic protein × 2 Photosystem II reaction center protein X × 2 Photosystem II reaction center protein ycf12 × 2 Photosystem II reaction center protein Y × 2 Photosystem II reaction center protein Z × 2 OEC OXYGEN EVOLVING SYSTEM × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE × 4 BCR BETA-CAROTENE × 22 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 2 IOD IODIDE ION × 10 MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;4% PEG 1450, 40mM MgSO4, 10mM MgCl2, 13% glycerol, 0.01% DM, 20mM MES (pH6.0), 10mM NaI, 5mM CaI, VAPOR DIFFUSION, HANGING DROP, temperature 293K 分辨率 4.00 Å R-free 0.326

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 42 个其他 PDB 条目、48 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 CY550_THEVL
Isoform
PDB实体 16
链与序列区间 作者链 V; PDB构建体 1–137; UniProt 27–163 作者链 v; PDB构建体 1–137; UniProt 27–163

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 3a0h

P(r) 距离分布 P(r) Distribution

P(r) distribution for 3a0h
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3a0h
沉积日期 deposition_date2009-03-17
结构标题 titleCrystal structure of I-substituted Photosystem II complex
关键词 keywords;MULTI-MEMBRANE PROTEIN COMPLEX, Electron transport, Herbicide resistance, Iron, Membrane, Metal-binding, Photosynthesis, Photosystem II, Thylakoid, Transmembrane, Transport, Heme, Reaction center ;; ELECTRON TRANSPORT
实验方法 methodX-RAY DIFFRACTION

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier56.96
回转半径 Rg (电子) rg_electron56.59
零角强度 I(0) i04536160000.00
分子量 molecular_weight677820.0 kDa
排除体积 excluded_volume888840 ų
包络体积 envelope_volume1068000 ų
水化壳体积 shell_volume148420 ų
包络直径 envelope_diameter208.9
壳层 Rg shell_rg64.28
包络 Rg envelope_rg56.69
形状 Rg shape_rg56.59
总 Rg total_rg56.79
总原子数 total_atoms48060
残基数 n_residues5246
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax193.1
Rg (实空间) rg_real56.89
Rg 误差 (实空间) rg_real_error2.05
I(0) (实空间) i0_real4.5360e+09
I(0) 误差 (实空间) i0_real_error9.8630e+07
Rg (倒空间) rg_reciprocal57.01
I(0) (倒空间) i0_reciprocal4537000000.0000
解质量估计 total_estimate0.8625
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary69.0
偏度 Skewness skewness0.348
峰度 Kurtosis kurtosis-0.289
角度范围 angular_range— – 0.1400 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha707800000.0000
实空间数据点数 n_real_points29
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.809; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.790

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (31)

7. 折叠分类 (SCOP + CATH) 38 domains

SCOP 2.08 (20 domains)

结构域编号 domain_idd3a0ha_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.26 — Bacterial photosystem II reaction centre, L and M subunits
超家族 Superfamily superfamilyf.26.1 — Bacterial photosystem II reaction centre, L and M subunits
家族 Family familyf.26.1.1 — Bacterial photosystem II reaction centre, L and M subunits
结构域编号 domain_idd3a0hb_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.55 — Photosystem II antenna protein-like
超家族 Superfamily superfamilyf.55.1 — Photosystem II antenna protein-like
家族 Family familyf.55.1.1 — Photosystem II antenna protein-like
结构域编号 domain_idd3a0hc_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.55 — Photosystem II antenna protein-like
超家族 Superfamily superfamilyf.55.1 — Photosystem II antenna protein-like
家族 Family familyf.55.1.1 — Photosystem II antenna protein-like
结构域编号 domain_idd3a0hd_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.26 — Bacterial photosystem II reaction centre, L and M subunits
超家族 Superfamily superfamilyf.26.1 — Bacterial photosystem II reaction centre, L and M subunits
家族 Family familyf.26.1.1 — Bacterial photosystem II reaction centre, L and M subunits
结构域编号 domain_idd3a0he_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.38 — Cytochrome b559 subunits
家族 Family familyf.23.38.1 — Cytochrome b559 subunits
结构域编号 domain_idd3a0hf_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.38 — Cytochrome b559 subunits
家族 Family familyf.23.38.1 — Cytochrome b559 subunits
结构域编号 domain_idd3a0hh_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.33 — Photosystem II 10 kDa phosphoprotein PsbH
家族 Family familyf.23.33.1 — PsbH-like
结构域编号 domain_idd3a0hi_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.37 — Photosystem II reaction center protein I, PsbI
家族 Family familyf.23.37.1 — PsbI-like
结构域编号 domain_idd3a0hj_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.32 — Photosystem II reaction center protein J, PsbJ
家族 Family familyf.23.32.1 — PsbJ-like
结构域编号 domain_idd3a0hk_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.36 — Photosystem II reaction center protein K, PsbK
家族 Family familyf.23.36.1 — PsbK-like
结构域编号 domain_idd3a0hl_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.31 — Photosystem II reaction center protein L, PsbL
家族 Family familyf.23.31.1 — PsbL-like
结构域编号 domain_idd3a0hm_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.35 — Photosystem II reaction center protein M, PsbM
家族 Family familyf.23.35.1 — PsbM-like
结构域编号 domain_idd3a0hn_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.39 — Photosystem II reaction center protein Y, PsbY
家族 Family familyf.23.39.1 — PsbY-like
结构域编号 domain_idd3a0ho_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.4 — Transmembrane beta-barrels
超家族 Superfamily superfamilyf.4.1 — OMPA-like
家族 Family familyf.4.1.4 — PsbO-like
结构域编号 domain_idd3a0ht_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.34 — Photosystem II reaction center protein T, PsbT
家族 Family familyf.23.34.1 — PsbT-like
结构域编号 domain_idd3a0hu_
类 Class classa — All alpha proteins
折叠类型 Fold folda.60 — SAM domain-like
超家族 Superfamily superfamilya.60.12 — PsbU/PolX domain-like
家族 Family familya.60.12.2 — PsbU-like
结构域编号 domain_idd3a0hv_
类 Class classa — All alpha proteins
折叠类型 Fold folda.3 — Cytochrome c
超家族 Superfamily superfamilya.3.1 — Cytochrome c
家族 Family familya.3.1.1 — monodomain cytochrome c
结构域编号 domain_idd3a0hx_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.40 — Photosystem II reaction center protein X, PsbX
家族 Family familyf.23.40.1 — PsbX-like
结构域编号 domain_idd3a0hy_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.41 — Photosystem II reaction center protein ycf12
家族 Family familyf.23.41.1 — Ycf12-like
结构域编号 domain_idd3a0hz_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.17 — Transmembrane helix hairpin
超家族 Superfamily superfamilyf.17.5 — PsbZ-like
家族 Family familyf.17.5.1 — PsbZ-like

CATH v4.4 (18 domains)

结构域编号 domain_id3a0hB02
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology680 — Photosystem II CP47 reaction center protein
同源超家族 H-superfamily homologous superfamily10 — Photosystem II CP47 reaction center protein
结构域编号 domain_id3a0hC02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily670 — photosystem ii from thermosynechococcus elongatus
结构域编号 domain_id3a0hE00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily860 — Photosystem II cytochrome b559, alpha subunit
结构域编号 domain_id3a0hH01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily880 — Photosystem II reaction center protein H
结构域编号 domain_id3a0hO01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology160 — Porin
同源超家族 H-superfamily homologous superfamily30 — Photosystem II, cytochrome c-550 precursor
结构域编号 domain_id3a0hO02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2050 — photosynthetic oxygen evolving center fold
同源超家族 H-superfamily homologous superfamily10 — photosynthetic oxygen evolving center domain
结构域编号 domain_id3a0hU01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology150 — DNA polymerase; domain 1
同源超家族 H-superfamily homologous superfamily320 — Photosystem II 12 kDa extrinsic protein
结构域编号 domain_id3a0hV00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
同源超家族 H-superfamily homologous superfamily10 — Cytochrome c-like domain
结构域编号 domain_id3a0hZ00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily740 — Photosystem II PsbZ, reaction centre
结构域编号 domain_id3a0hb02
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology680 — Photosystem II CP47 reaction center protein
同源超家族 H-superfamily homologous superfamily10 — Photosystem II CP47 reaction center protein
结构域编号 domain_id3a0hc02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily670 — photosystem ii from thermosynechococcus elongatus
结构域编号 domain_id3a0he00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily860 — Photosystem II cytochrome b559, alpha subunit
结构域编号 domain_id3a0hh01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily880 — Photosystem II reaction center protein H
结构域编号 domain_id3a0ho01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology160 — Porin
同源超家族 H-superfamily homologous superfamily30 — Photosystem II, cytochrome c-550 precursor
结构域编号 domain_id3a0ho02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology2050 — photosynthetic oxygen evolving center fold
同源超家族 H-superfamily homologous superfamily10 — photosynthetic oxygen evolving center domain
结构域编号 domain_id3a0hu01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology150 — DNA polymerase; domain 1
同源超家族 H-superfamily homologous superfamily320 — Photosystem II 12 kDa extrinsic protein
结构域编号 domain_id3a0hv00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
同源超家族 H-superfamily homologous superfamily10 — Cytochrome c-like domain
结构域编号 domain_id3a0hz00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily740 — Photosystem II PsbZ, reaction centre

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9. 文件与曲线 (10)