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1Z1Z
NMR structure of the gpu tail protein from lambda bacteriophage
Deposited 2005-03-07
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–131(131 aa)
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Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.8;293 K;Ionic strength (raw mmCIF value) 50 mM KCl;Pressure 1
NMR sample composition
0.9 mM gpU, U-15N,13C, 10 mM Tris-d11, pH 7.8, 50 mM potassium chloride, 0.02% sodium azide, 10% D2O, 90% H2O | 10% D2O, 90% H2O
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Resolution not provided
|
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3FZ2
Crystal structure of the tail terminator protein from phage lambda (gpU-D74A)
Deposited 2009-01-23
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–131(131 aa)
Chain B
1–131(131 aa)
Chain E
1–131(131 aa)
Chain F
1–131(131 aa)
Chain I
1–131(131 aa)
Chain K
1–131(131 aa)
|
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 7
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.70 Å
R-free 0.283
|
|
3FZ2
Crystal structure of the tail terminator protein from phage lambda (gpU-D74A)
Deposited 2009-01-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain C
1–131(131 aa)
Chain D
1–131(131 aa)
Chain G
1–131(131 aa)
Chain H
1–131(131 aa)
Chain J
1–131(131 aa)
Chain L
1–131(131 aa)
|
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.70 Å
R-free 0.283
|
|
3FZ2
Crystal structure of the tail terminator protein from phage lambda (gpU-D74A)
Deposited 2009-01-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–131(131 aa)
Chain B
1–131(131 aa)
Chain C
1–131(131 aa)
Chain D
1–131(131 aa)
Chain E
1–131(131 aa)
Chain F
1–131(131 aa)
Chain G
1–131(131 aa)
Chain H
1–131(131 aa)
Chain I
1–131(131 aa)
Chain J
1–131(131 aa)
Chain K
1–131(131 aa)
Chain L
1–131(131 aa)
|
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D74A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 13
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.70 Å
R-free 0.283
|
|
8IYD
Tail cap of phage lambda tail
Deposited 2023-04-04
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 30
PDB declaration: 30-meric
|
Chain G
1–131(131 aa)
Chain K
1–131(131 aa)
Chain Q
1–131(131 aa)
Chain U
1–131(131 aa)
Chain W
1–131(131 aa)
Chain u
1–131(131 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 3.10 Å
|
|
8K37
Structure of the bacteriophage lambda neck
Deposited 2023-07-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 18
PDB declaration: octadecameric
|
Chain A
1–131(131 aa)
Chain B
1–131(131 aa)
Chain C
1–131(131 aa)
Chain D
1–131(131 aa)
Chain E
1–131(131 aa)
Chain F
1–131(131 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8XOW
Mature virion portal of bacteriophage lambda
Deposited 2024-01-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 36
PDB declaration: 36-meric
|
Chain U
1–131(131 aa)
Chain U1
1–131(131 aa)
Chain U2
1–131(131 aa)
Chain U3
1–131(131 aa)
Chain U4
1–131(131 aa)
Chain U5
1–131(131 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 3.32 Å
|
|
8XPM
Mature virion portal of phage lambda with DNA
Deposited 2024-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 66
PDB declaration: 68-meric
|
Chain U
1–131(131 aa)
Chain U1
1–131(131 aa)
Chain U2
1–131(131 aa)
Chain U3
1–131(131 aa)
Chain U4
1–131(131 aa)
Chain U5
1–131(131 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 3.90 Å
|
|
8XQB
Mature virion portal vertex of bacteriophage lambda
Deposited 2024-01-05
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 71
PDB declaration: 71-meric
|
Chain U
1–131(131 aa)
Chain U1
1–131(131 aa)
Chain U2
1–131(131 aa)
Chain U3
1–131(131 aa)
Chain U4
1–131(131 aa)
Chain U5
1–131(131 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen NITROGEN
|
Resolution 4.07 Å
|