3mt6

Structure of ClpP from Escherichia coli in complex with ADEP1

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP-dependent Clp protease proteolytic subunit

Escherichia coli

UniProt P0A6G7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 ACYLDEPSIPEPTIDE 1 × 14 (4S)-2-METHYL-2,4-PENTANEDIOL × 27 water × 14 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 28 ACYLDEPSIPEPTIDE 1 × 14 (4S)-2-METHYL-2,4-PENTANEDIOL × 28 water × 15 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CLPP_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–207; UniProt 1–207 Author chain B; PDBConstruct 1–207; UniProt 1–207 Author chain C; PDBConstruct 1–207; UniProt 1–207 Author chain D; PDBConstruct 1–207; UniProt 1–207 Author chain E; PDBConstruct 1–207; UniProt 1–207 Author chain F; PDBConstruct 1–207; UniProt 1–207 Author chain G; PDBConstruct 1–207; UniProt 1–207 Author chain H; PDBConstruct 1–207; UniProt 1–207 Author chain I; PDBConstruct 1–207; UniProt 1–207 Author chain J; PDBConstruct 1–207; UniProt 1–207 Author chain K; PDBConstruct 1–207; UniProt 1–207 Author chain L; PDBConstruct 1–207; UniProt 1–207 Author chain M; PDBConstruct 1–207; UniProt 1–207 Author chain N; PDBConstruct 1–207; UniProt 1–207 Author chain O; PDBConstruct 1–207; UniProt 1–207 Author chain P; PDBConstruct 1–207; UniProt 1–207 Author chain Q; PDBConstruct 1–207; UniProt 1–207 Author chain R; PDBConstruct 1–207; UniProt 1–207 Author chain S; PDBConstruct 1–207; UniProt 1–207 Author chain T; PDBConstruct 1–207; UniProt 1–207 Author chain U; PDBConstruct 1–207; UniProt 1–207 Author chain V; PDBConstruct 1–207; UniProt 1–207 Author chain W; PDBConstruct 1–207; UniProt 1–207 Author chain X; PDBConstruct 1–207; UniProt 1–207 Author chain Y; PDBConstruct 1–207; UniProt 1–207 Author chain Z; PDBConstruct 1–207; UniProt 1–207 Author chain a; PDBConstruct 1–207; UniProt 1–207 Author chain b; PDBConstruct 1–207; UniProt 1–207

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3mt6
Deposition date deposition_date2010-04-30
Structure title titleStructure of ClpP from Escherichia coli in complex with ADEP1
Keywords keywordsENDOPEPTIDASE CLP, CASEINOLYTIC PROTEASE, PROTEASE TI, ACYPDEPSIPEPTIDE ANTIBIOTICS, HYDROLASE-ANTIBIOTIC COMPLEX; HYDROLASE/ANTIBIOTIC
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3mt6__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3mt6__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3mt6__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)43.72 Å
Rg (electron density)42.81 Å
Total Rg43.14 Å
Atom count21128
Residues2646
Excluded volume380820 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3mt6__assembly_1__model_1 28-meric (28) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3mt6__assembly_2__model_1 28-meric (28) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 54 domains

SCOP 2.08 (26 domains)

Domain ID domain_idd3mt6a_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6b_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6c_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6d_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6e_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6f_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6g_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6h_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6i_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6j_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6k_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6l_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6m_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6n_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6o_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6p_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6q_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6r_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6s_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6t_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6u_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6v_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6w_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6x_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6y_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit
Domain ID domain_idd3mt6z_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.14 — ClpP/crotonase
Superfamily Superfamily superfamilyc.14.1 — ClpP/crotonase
Family Family familyc.14.1.1 — Clp protease, ClpP subunit

CATH v4.4 (28 domains)

Domain ID domain_id3mt6A00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6B00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6C00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6D00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6E00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6F00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6G00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6H00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6I00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6J00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6K00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6L00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6M00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6N00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6O00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6P00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6Q00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6R00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6S00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6T00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6U00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6V00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6W00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6X00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6Y00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6Z00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6a00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Domain ID domain_id3mt6b00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology226 — 2-enoyl-CoA Hydratase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — 2-enoyl-CoA Hydratase; Chain A, domain 1
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7. Citations (1)