3pxb

Impact of BRCA1 BRCT domain missense substitutions on phospho-peptide recognition: T1700A

Method: X-RAY DIFFRACTION Dmax: 71.3 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Breast cancer type 1 susceptibility protein

Homo sapiens

UniProt P38398

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1646–1859 Fragment:BRCT domain, UNP residues 1646-1859 Mutation:T1700A SO4 SULFATE ION × 1 NI NICKEL (II) ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.8 M Li2SO4 100 mM TRIS 5mM CaCl2 10 mM NiCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K Resolution 2.50 Å R-free 0.274

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

31 other PDB entries and 70 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BRCA1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–214; UniProt 1646–1859

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3pxb

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3pxb
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3pxb
Deposition date deposition_date2010-12-09
Structure title titleImpact of BRCA1 BRCT domain missense substitutions on phospho-peptide recognition: T1700A
Keywords keywordsBRCA1 protein, Missense, phosphopeptide recognition, BRCT tandem repeat, BACH1 Ctip Abraxas, Nuclear protein, PROTEIN BINDING; PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.45
Radius of gyration Rg (electron density) rg_electron18.78
Forward intensity I(0) i09822010.00
Molecular weight molecular_weight23238.0 kDa
Excluded volume excluded_volume29076 ų
Envelope volume envelope_volume33592 ų
Hydration-shell volume shell_volume15853 ų
Envelope diameter envelope_diameter72.7
Shell Rg shell_rg24.13
Envelope Rg envelope_rg19.25
Shape Rg shape_rg18.78
Total Rg total_rg19.65
Total atoms total_atoms1627
Residues n_residues208
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax71.3
Rg (real space) rg_real19.56
Rg uncertainty (real space) rg_real_error0.60
I(0) (real space) i0_real9.8220e+06
I(0) uncertainty (real space) i0_real_error1.2730e+05
Rg (reciprocal space) rg_reciprocal19.54
I(0) (reciprocal space) i0_reciprocal9822000.0000
Solution quality estimate total_estimate0.5318
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary21.1
Skewness Skewness skewness0.557
Kurtosis Kurtosis kurtosis0.017
Angular range angular_range— – 0.4100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3206000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.584; Stabil: 1.000; Sysdev: 0.132; Positv: 1.000; Valcen: 0.761; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd3pxba1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.15 — BRCT domain
Superfamily Superfamily superfamilyc.15.1 — BRCT domain
Family Family familyc.15.1.3 — BRCT domain
Domain ID domain_idd3pxba2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.15 — BRCT domain
Superfamily Superfamily superfamilyc.15.1 — BRCT domain
Family Family familyc.15.1.3 — BRCT domain

CATH v4.4 (2 domains)

Domain ID domain_id3pxbA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10190 — BRCT domain
Domain ID domain_id3pxbA02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10190 — BRCT domain

8. Citations (5)

9. Files and Curves (10)