4jlu

Crystal structure of BRCA1 BRCT with doubly phosphorylated Abraxas

Method: X-RAY DIFFRACTION Dmax: 69.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Breast cancer type 1 susceptibility protein

Homo sapiens

UniProt P38398

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1649–1859 Fragment:UNP RESIDUES 1649-1859 BRCA1-A complex subunit Abraxas × 1 (Q6UWZ7) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;pH 6.5, VAPOR DIFFUSION, HANGING DROP Resolution 3.50 Å R-free 0.327

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

31 other PDB entries and 70 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BRCA1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–211; UniProt 1649–1859

BRCA1-A complex subunit Abraxas

OrganismNot specified

UniProt Q6UWZ7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 399–409 Fragment:UNP RESIDUES 399-409 Non-standard monomer:Yes (specific site not provided by mmCIF) Breast cancer type 1 susceptibility protein × 1 (P38398) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;pH 6.5, VAPOR DIFFUSION, HANGING DROP Resolution 3.50 Å R-free 0.327

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F175A_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–11; UniProt 399–409

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4jlu

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4jlu
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4jlu
Deposition date deposition_date2013-03-13
Structure title titleCrystal structure of BRCA1 BRCT with doubly phosphorylated Abraxas
Keywords keywordsKINASE-PROTEIN BINDING complex, ANTITUMOR PROTEIN-SIGNALING PROTEIN complex; ANTITUMOR PROTEIN/SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.94
Radius of gyration Rg (electron density) rg_electron19.15
Forward intensity I(0) i011961700.00
Molecular weight molecular_weight25548.0 kDa
Excluded volume excluded_volume31884 ų
Envelope volume envelope_volume38284 ų
Hydration-shell volume shell_volume17458 ų
Envelope diameter envelope_diameter71.8
Shell Rg shell_rg24.77
Envelope Rg envelope_rg19.47
Shape Rg shape_rg19.15
Total Rg total_rg20.03
Total atoms total_atoms1792
Residues n_residues220
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax69.6
Rg (real space) rg_real19.99
Rg uncertainty (real space) rg_real_error0.57
I(0) (real space) i0_real1.1960e+07
I(0) uncertainty (real space) i0_real_error1.6960e+05
Rg (reciprocal space) rg_reciprocal19.99
I(0) (reciprocal space) i0_reciprocal11960000.0000
Solution quality estimate total_estimate0.7650
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary22.5
Skewness Skewness skewness0.485
Kurtosis Kurtosis kurtosis-0.062
Angular range angular_range— – 0.4000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3869000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.679; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.910; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id4jluA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10190 — BRCT domain
Domain ID domain_id4jluA02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10190 — BRCT domain

8. Citations (1)

9. Files and Curves (10)