4qe9

Open MthK pore structure soaked in 10 mM Ba2+/100 mM K+

Method: X-RAY DIFFRACTION Dmax: 50.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calcium-gated potassium channel MthK

Methanothermobacter thermautotrophicus

UniProt O27564

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 18–100 Fragment:UNP residues 18-100 Mutation:S51H, V60C K POTASSIUM ION × 24 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;3.0-3.5M 1,6-Hexandiol, 100mM HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K Resolution 2.15 Å R-free 0.257

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

47 other PDB entries and 76 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MTHK_METTH
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–83; UniProt 18–100

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4qe9

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4qe9
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id4qe9
Deposition date deposition_date2014-05-15
Structure title titleOpen MthK pore structure soaked in 10 mM Ba2+/100 mM K+
Keywords keywordsTransmembrane, Ion channel, Open conformation, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier14.60
Radius of gyration Rg (electron density) rg_electron13.70
Forward intensity I(0) i01267680.00
Molecular weight molecular_weight9359.0 kDa
Excluded volume excluded_volume12435 ų
Envelope volume envelope_volume13556 ų
Hydration-shell volume shell_volume9084 ų
Envelope diameter envelope_diameter49.7
Shell Rg shell_rg18.34
Envelope Rg envelope_rg14.17
Shape Rg shape_rg13.66
Total Rg total_rg15.14
Total atoms total_atoms654
Residues n_residues83
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax50.8
Rg (real space) rg_real14.74
Rg uncertainty (real space) rg_real_error0.47
I(0) (real space) i0_real1.2680e+06
I(0) uncertainty (real space) i0_real_error1.5590e+04
Rg (reciprocal space) rg_reciprocal14.72
I(0) (reciprocal space) i0_reciprocal1268000.0000
Solution quality estimate total_estimate0.8145
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary14.1
Skewness Skewness skewness0.505
Kurtosis Kurtosis kurtosis-0.296
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha151000.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.636; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.708; Smooth: 0.968

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id4qe9A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)