4rai

Crystal Structure of CNG mimicking NaK-ETPP mutant in complex with Na+

Method: X-RAY DIFFRACTION Dmax: 104.3 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus ATCC 14579

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P NA SODIUM ION × 16 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 8 GLY GLYCINE × 12 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;CNG-ETPP(K+) crystals grown in 100mM MES pH 6.5, 60-66% (w/v) MPD, 100mM Glycine, Soaking O.N. in 70% MPD, 10mM DM, 100mM Hepes pH 7.5 and 100mM NaCl, VAPOR DIFFUSION, HANGING DROP Resolution 2.31 Å R-free 0.215
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P NA SODIUM ION × 12 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 12 GLY GLYCINE × 28 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;CNG-ETPP(K+) crystals grown in 100mM MES pH 6.5, 60-66% (w/v) MPD, 100mM Glycine, Soaking O.N. in 70% MPD, 10mM DM, 100mM Hepes pH 7.5 and 100mM NaCl, VAPOR DIFFUSION, HANGING DROP Resolution 2.31 Å R-free 0.215

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 81 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–92; UniProt 20–110 Author chain B; PDBConstruct 3–92; UniProt 20–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4rai

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4rai
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4rai
Deposition date deposition_date2014-09-10
Structure title titleCrystal Structure of CNG mimicking NaK-ETPP mutant in complex with Na+
Keywords keywordsAlpha helical membrane protein, chimera channel, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.15
Radius of gyration Rg (electron density) rg_electron27.07
Forward intensity I(0) i05602950.00
Molecular weight molecular_weight20728.0 kDa
Excluded volume excluded_volume27236 ų
Envelope volume envelope_volume37340 ų
Hydration-shell volume shell_volume13203 ų
Envelope diameter envelope_diameter109.6
Shell Rg shell_rg29.57
Envelope Rg envelope_rg28.05
Shape Rg shape_rg27.12
Total Rg total_rg27.29
Total atoms total_atoms1466
Residues n_residues182
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax104.3
Rg (real space) rg_real27.88
Rg uncertainty (real space) rg_real_error1.29
I(0) (real space) i0_real5.6030e+06
I(0) uncertainty (real space) i0_real_error8.5040e+04
Rg (reciprocal space) rg_reciprocal27.66
I(0) (reciprocal space) i0_reciprocal5602000.0000
Solution quality estimate total_estimate0.6916
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary18.0
Skewness Skewness skewness0.683
Kurtosis Kurtosis kurtosis-0.205
Angular range angular_range— – 0.2900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha311700.0000
Real-space data points n_real_points59
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.320; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.065; Smooth: 0.963

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id4raiA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4raiB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)