5ijo

Alternative composite structure of the inner ring of the human nuclear pore complex (16 copies of Nup188, 16 copies of Nup205)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Nuclear pore complex protein Nup155

Homo sapiens

UniProt O75694

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p54 × 32 (Q7Z3B4) Nucleoporin p58/p45 × 32 (Q9BVL2) Nuclear pore glycoprotein p62 × 32 (P37198) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU155_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1391; UniProt 1–1391 Author chain B; PDBConstruct 1–1391; UniProt 1–1391 Author chain E; PDBConstruct 1–1391; UniProt 1–1391 Author chain K; PDBConstruct 1–1391; UniProt 1–1391 Author chain Q; PDBConstruct 1–1391; UniProt 1–1391 Author chain W; PDBConstruct 1–1391; UniProt 1–1391

Nuclear pore complex protein Nup93

Homo sapiens

UniProt Q8N1F7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p54 × 32 (Q7Z3B4) Nucleoporin p58/p45 × 32 (Q9BVL2) Nuclear pore glycoprotein p62 × 32 (P37198) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP93_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–819; UniProt 1–819 Author chain I; PDBConstruct 1–819; UniProt 1–819 Author chain O; PDBConstruct 1–819; UniProt 1–819 Author chain U; PDBConstruct 1–819; UniProt 1–819

Nuclear pore complex protein Nup205

Homo sapiens

UniProt Q92621

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nucleoporin p54 × 32 (Q7Z3B4) Nucleoporin p58/p45 × 32 (Q9BVL2) Nuclear pore glycoprotein p62 × 32 (P37198) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU205_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–2012; UniProt 1–2012 Author chain P; PDBConstruct 1–2012; UniProt 1–2012

Nucleoporin p54

Homo sapiens

UniProt Q7Z3B4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p58/p45 × 32 (Q9BVL2) Nuclear pore glycoprotein p62 × 32 (P37198) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP54_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–507; UniProt 1–507 Author chain L; PDBConstruct 1–507; UniProt 1–507 Author chain R; PDBConstruct 1–507; UniProt 1–507 Author chain X; PDBConstruct 1–507; UniProt 1–507

Nucleoporin p58/p45

Homo sapiens

UniProt Q9BVL2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p54 × 32 (Q7Z3B4) Nuclear pore glycoprotein p62 × 32 (P37198) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP58_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain G; PDBConstruct 1–599; UniProt 1–599 Author chain M; PDBConstruct 1–599; UniProt 1–599 Author chain S; PDBConstruct 1–599; UniProt 1–599 Author chain Y; PDBConstruct 1–599; UniProt 1–599

Nuclear pore glycoprotein p62

Homo sapiens

UniProt P37198

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p54 × 32 (Q7Z3B4) Nucleoporin p58/p45 × 32 (Q9BVL2) Nucleoporin NUP188 homolog × 16 (Q5SRE5) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP62_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain H; PDBConstruct 1–522; UniProt 1–522 Author chain N; PDBConstruct 1–522; UniProt 1–522 Author chain T; PDBConstruct 1–522; UniProt 1–522 Author chain Z; PDBConstruct 1–522; UniProt 1–522

Nucleoporin NUP188 homolog

Homo sapiens

UniProt Q5SRE5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 208 Nuclear pore complex protein Nup155 × 48 (O75694) Nuclear pore complex protein Nup93 × 32 (Q8N1F7) Nuclear pore complex protein Nup205 × 16 (Q92621) Nucleoporin p54 × 32 (Q7Z3B4) Nucleoporin p58/p45 × 32 (Q9BVL2) Nuclear pore glycoprotein p62 × 32 (P37198) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU188_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain J; PDBConstruct 1–1749; UniProt 1–1749 Author chain V; PDBConstruct 1–1749; UniProt 1–1749

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5ijo
Deposition date deposition_date2016-03-02
Structure title titleAlternative composite structure of the inner ring of the human nuclear pore complex (16 copies of Nup188, 16 copies of Nup205)
Keywords keywordsNuclear pore complex, Nucleocytoplasmic transport, Transport protein; TRANSPORT PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5ijo__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5ijo__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5ijo__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)327.90 Å
Total Rg327.90 Å
Atom count612208
Residues123552
Excluded volume9876500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5ijo__assembly_1__model_1 208-meric (208) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

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7. Citations (1)