5w1k

JUNV GP1 CR1-10 Fab CR1-28 Fab complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

CR1-28 Fab light chain

Homo sapiens

UniProt P0DOX7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name IGK_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 103–206; UniProt 109–212 Author chain F; PDBConstruct 103–206; UniProt 109–212 Author chain K; PDBConstruct 103–206; UniProt 109–212 Author chain S; PDBConstruct 103–206; UniProt 109–212

CR1-28 Fab heavy chain

Homo sapiens

UniProt S6C4R2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S6C4R2_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 127–226; UniProt 142–241 Author chain G; PDBConstruct 127–226; UniProt 142–241 Author chain L; PDBConstruct 127–226; UniProt 142–241 Author chain T; PDBConstruct 127–226; UniProt 142–241

CR1-10 Fab light chain

Homo sapiens

UniProt Q6PIL8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab heavy chain × 1 (S6B2B6) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q6PIL8_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 106–213; UniProt 128–235 Author chain H; PDBConstruct 106–213; UniProt 128–235 Author chain M; PDBConstruct 106–213; UniProt 128–235 Author chain N; PDBConstruct 106–213; UniProt 128–235

CR1-10 Fab heavy chain

Homo sapiens

UniProt S6B2B6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) Pre-glycoprotein polyprotein GP complex × 1 (P26313) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) Pre-glycoprotein polyprotein GP complex × 1 (P26313) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S6B2B6_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 126–225; UniProt 146–245 Author chain I; PDBConstruct 126–225; UniProt 146–245 Author chain O; PDBConstruct 126–225; UniProt 146–245 Author chain Q; PDBConstruct 126–225; UniProt 146–245

Pre-glycoprotein polyprotein GP complex

Junin mammarenavirus

UniProt P26313

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 5 其他Polymer 1 CR1-28 Fab light chain × 1 (P0DOX7) CR1-28 Fab heavy chain × 1 (S6C4R2) CR1-10 Fab light chain × 1 (Q6PIL8) CR1-10 Fab heavy chain × 1 (S6B2B6) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GLYC_JUNIN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–142; UniProt 87–228 Author chain J; PDBConstruct 1–142; UniProt 87–228 Author chain P; PDBConstruct 1–142; UniProt 87–228 Author chain R; PDBConstruct 1–142; UniProt 87–228

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5w1k
Deposition date deposition_date2017-06-03
Structure title titleJUNV GP1 CR1-10 Fab CR1-28 Fab complex
Keywords keywordsFab, antibody, Junin virus, arenavirus, viral protein, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5w1k__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5w1k__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5w1k__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)42.49 Å
Rg (electron density)43.00 Å
Total Rg43.21 Å
Atom count7788
Residues1010
Excluded volume137790 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5w1k__assembly_1__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5w1k__assembly_2__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 5w1k__assembly_3__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 5w1k__assembly_4__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 24 domains

CATH v4.4 (24 domains)

Domain ID domain_id5w1kA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kC01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kC02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kD02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kF01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kF02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kG02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kH01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kH02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kI02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kK01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kK02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kL02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kM01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kM02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kN01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kN02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kO02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kQ02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kS01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kS02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1kT02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
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7. Citations (1)