6fiz

Crystal Structure of CNG mimicking NaK-EAPP mutant (T67A) cocrystallized with K+

Method: X-RAY DIFFRACTION Dmax: 120.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein,Cyclic nucleotide-gated olfactory channel,Potassium channel protein

Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)

UniProt Q16280

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 339–344 Chain B; UniProt 339–344 Chain C; UniProt 339–344 Chain D; UniProt 339–344 Not recorded GLY GLYCINE × 10 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
2 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain E; UniProt 339–344 Chain F; UniProt 339–344 Chain G; UniProt 339–344 Chain H; UniProt 339–344 Not recorded GLY GLYCINE × 12 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
3 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain I; UniProt 339–344 Chain J; UniProt 339–344 Chain K; UniProt 339–344 Chain L; UniProt 339–344 Not recorded GLY GLYCINE × 17 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
4 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain M; UniProt 339–344 Chain N; UniProt 339–344 Chain O; UniProt 339–344 Chain P; UniProt 339–344 Not recorded GLY GLYCINE × 21 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CNGA2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 47–52; UniProt 339–344 Author chain B; PDBConstruct 47–52; UniProt 339–344 Author chain C; PDBConstruct 47–52; UniProt 339–344 Author chain D; PDBConstruct 47–52; UniProt 339–344 Author chain E; PDBConstruct 47–52; UniProt 339–344 Author chain F; PDBConstruct 47–52; UniProt 339–344 Author chain G; PDBConstruct 47–52; UniProt 339–344 Author chain H; PDBConstruct 47–52; UniProt 339–344 Author chain I; PDBConstruct 47–52; UniProt 339–344 Author chain J; PDBConstruct 47–52; UniProt 339–344 Author chain K; PDBConstruct 47–52; UniProt 339–344 Author chain L; PDBConstruct 47–52; UniProt 339–344 Author chain M; PDBConstruct 47–52; UniProt 339–344 Author chain N; PDBConstruct 47–52; UniProt 339–344 Author chain O; PDBConstruct 47–52; UniProt 339–344 Author chain P; PDBConstruct 47–52; UniProt 339–344

Potassium channel protein,Cyclic nucleotide-gated olfactory channel,Potassium channel protein

Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 20–64 Chain A; UniProt 72–110 Chain B; UniProt 20–64 Chain B; UniProt 72–110 Chain C; UniProt 20–64 Chain C; UniProt 72–110 Chain D; UniProt 20–64 Chain D; UniProt 72–110 Not recorded GLY GLYCINE × 10 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
2 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain E; UniProt 20–64 Chain E; UniProt 72–110 Chain F; UniProt 20–64 Chain F; UniProt 72–110 Chain G; UniProt 20–64 Chain G; UniProt 72–110 Chain H; UniProt 20–64 Chain H; UniProt 72–110 Not recorded GLY GLYCINE × 12 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
3 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain I; UniProt 20–64 Chain I; UniProt 72–110 Chain J; UniProt 20–64 Chain J; UniProt 72–110 Chain K; UniProt 20–64 Chain K; UniProt 72–110 Chain L; UniProt 20–64 Chain L; UniProt 72–110 Not recorded GLY GLYCINE × 17 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269
4 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain M; UniProt 20–64 Chain M; UniProt 72–110 Chain N; UniProt 20–64 Chain N; UniProt 72–110 Chain O; UniProt 20–64 Chain O; UniProt 72–110 Chain P; UniProt 20–64 Chain P; UniProt 72–110 Not recorded GLY GLYCINE × 21 K POTASSIUM ION × 3 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;40-44% MPD 100 mM MES pH 6.5 25mM Glycine Resolution 2.63 Å R-free 0.269

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 79 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–46; UniProt 20–64 Author chain A; PDBConstruct 53–91; UniProt 72–110 Author chain B; PDBConstruct 2–46; UniProt 20–64 Author chain B; PDBConstruct 53–91; UniProt 72–110 Author chain C; PDBConstruct 2–46; UniProt 20–64 Author chain C; PDBConstruct 53–91; UniProt 72–110 Author chain D; PDBConstruct 2–46; UniProt 20–64 Author chain D; PDBConstruct 53–91; UniProt 72–110 Author chain E; PDBConstruct 2–46; UniProt 20–64 Author chain E; PDBConstruct 53–91; UniProt 72–110 Author chain F; PDBConstruct 2–46; UniProt 20–64 Author chain F; PDBConstruct 53–91; UniProt 72–110 Author chain G; PDBConstruct 2–46; UniProt 20–64 Author chain G; PDBConstruct 53–91; UniProt 72–110 Author chain H; PDBConstruct 2–46; UniProt 20–64 Author chain H; PDBConstruct 53–91; UniProt 72–110 Author chain I; PDBConstruct 2–46; UniProt 20–64 Author chain I; PDBConstruct 53–91; UniProt 72–110 Author chain J; PDBConstruct 2–46; UniProt 20–64 Author chain J; PDBConstruct 53–91; UniProt 72–110 Author chain K; PDBConstruct 2–46; UniProt 20–64 Author chain K; PDBConstruct 53–91; UniProt 72–110 Author chain L; PDBConstruct 2–46; UniProt 20–64 Author chain L; PDBConstruct 53–91; UniProt 72–110 Author chain M; PDBConstruct 2–46; UniProt 20–64 Author chain M; PDBConstruct 53–91; UniProt 72–110 Author chain N; PDBConstruct 2–46; UniProt 20–64 Author chain N; PDBConstruct 53–91; UniProt 72–110 Author chain O; PDBConstruct 2–46; UniProt 20–64 Author chain O; PDBConstruct 53–91; UniProt 72–110 Author chain P; PDBConstruct 2–46; UniProt 20–64 Author chain P; PDBConstruct 53–91; UniProt 72–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6fiz

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6fiz
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6fiz
Deposition date deposition_date2018-01-19
Structure title titleCrystal Structure of CNG mimicking NaK-EAPP mutant (T67A) cocrystallized with K+
Keywords keywordsCNG mimick, ion channel, transport channel, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier39.68
Radius of gyration Rg (electron density) rg_electron38.94
Forward intensity I(0) i0290803000.00
Molecular weight molecular_weight165720.0 kDa
Excluded volume excluded_volume218460 ų
Envelope volume envelope_volume284780 ų
Hydration-shell volume shell_volume59192 ų
Envelope diameter envelope_diameter128.9
Shell Rg shell_rg46.43
Envelope Rg envelope_rg38.14
Shape Rg shape_rg38.93
Total Rg total_rg39.48
Total atoms total_atoms11740
Residues n_residues1462
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax120.0
Rg (real space) rg_real39.35
Rg uncertainty (real space) rg_real_error1.04
I(0) (real space) i0_real2.9080e+08
I(0) uncertainty (real space) i0_real_error4.9580e+06
Rg (reciprocal space) rg_reciprocal39.56
I(0) (reciprocal space) i0_reciprocal290900000.0000
Solution quality estimate total_estimate0.8969
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary60.0
Skewness Skewness skewness-0.046
Kurtosis Kurtosis kurtosis-0.695
Angular range angular_range— – 0.2000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha89310000.0000
Real-space data points n_real_points41
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.912; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.934

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 16 domains

CATH v4.4 (16 domains)

Domain ID domain_id6fizA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizD00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizE00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizF00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizG00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizH00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizI00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizJ00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizK00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizL00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizM00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizN00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizO00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id6fizP00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)