|
1PN5
NMR structure of the NALP1 Pyrin domain (PYD)
Deposited 2003-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–93(93 aa)
Fragment:Pyrin domain (PYD)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 6.5;293 K;Pressure 1
NMR sample composition
1mM NALP1 PYD U-15N,13C; 50mM Na / PO4 - Buffer; 50mM NaCl; 1mM CHAPS; 20mM DTT (D10); 0.02% NaN3; 0.1mM EDTA; protease inhibitor cocktail (Complete, Roche); 95% H2O, 5% D2O | 95% H2O/5% D2O
|
Resolution not provided
|
|
3KAT
Crystal Structure of the CARD domain of the human NLRP1 protein, Northeast Structural Genomics Consortium Target HR3486E
Deposited 2009-10-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1371–1467(97 aa)
Fragment:CARD domain
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution: 18% PEG3350 and 150 mM sodium formate., VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 3.10 Å
R-free 0.260
|
|
3KAT
Crystal Structure of the CARD domain of the human NLRP1 protein, Northeast Structural Genomics Consortium Target HR3486E
Deposited 2009-10-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1371–1467(97 aa)
Fragment:CARD domain
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution: 18% PEG3350 and 150 mM sodium formate., VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 3.10 Å
R-free 0.260
|
|
4IFP
X-ray Crystal Structure of Human NLRP1 CARD Domain
Deposited 2012-12-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1335–1418(84 aa)
Fragment:NLRP1-CARD
|
Not recorded
|
MLI MALONATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;298 K;1.4 M Malonate, 100 mM HEPES 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å
R-free 0.208
|
|
4IFP
X-ray Crystal Structure of Human NLRP1 CARD Domain
Deposited 2012-12-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1335–1418(84 aa)
Fragment:NLRP1-CARD
|
Not recorded
|
MLI MALONATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;298 K;1.4 M Malonate, 100 mM HEPES 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å
R-free 0.208
|
|
4IFP
X-ray Crystal Structure of Human NLRP1 CARD Domain
Deposited 2012-12-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1335–1418(84 aa)
Fragment:NLRP1-CARD
|
Not recorded
|
MLI MALONATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;298 K;1.4 M Malonate, 100 mM HEPES 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.99 Å
R-free 0.208
|
|
4IM6
LRR domain from human NLRP1
Deposited 2013-01-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
791–990(200 aa)
Fragment:LRR domain (UNP Residues 791-990)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;0.1 M Tris pH 8.0, 0.02 M MgCl2, 25 % (w/v) PAA 5100, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å
R-free 0.183
|
|
4IM6
LRR domain from human NLRP1
Deposited 2013-01-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
791–990(200 aa)
Fragment:LRR domain (UNP Residues 791-990)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;0.1 M Tris pH 8.0, 0.02 M MgCl2, 25 % (w/v) PAA 5100, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.65 Å
R-free 0.183
|
|
5Y3S
Crystal structure of human NLRP1 leucine rich repeat domain
Deposited 2017-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
790–990(201 aa)
Fragment:UNP residues 790-990
|
Not recorded
|
PO4 PHOSPHATE ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.6M Sodium Potassium Phosphate, 100mM HEPES, pH 6.4
|
Resolution 2.45 Å
R-free 0.259
|
|
5Y3S
Crystal structure of human NLRP1 leucine rich repeat domain
Deposited 2017-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
790–990(201 aa)
Fragment:UNP residues 790-990
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.6M Sodium Potassium Phosphate, 100mM HEPES, pH 6.4
|
Resolution 2.45 Å
R-free 0.259
|
|
5Y3S
Crystal structure of human NLRP1 leucine rich repeat domain
Deposited 2017-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
790–990(201 aa)
Fragment:UNP residues 790-990
|
Not recorded
|
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.6M Sodium Potassium Phosphate, 100mM HEPES, pH 6.4
|
Resolution 2.45 Å
R-free 0.259
|
|
5Y3S
Crystal structure of human NLRP1 leucine rich repeat domain
Deposited 2017-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
790–990(201 aa)
Fragment:UNP residues 790-990
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.6M Sodium Potassium Phosphate, 100mM HEPES, pH 6.4
|
Resolution 2.45 Å
R-free 0.259
|
|
6K7V
Structure of NLRP1 CARD filament
Deposited 2019-06-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1379–1466(88 aa)
Chain B
1379–1466(88 aa)
Chain C
1379–1466(88 aa)
Chain D
1379–1466(88 aa)
Chain E
1379–1466(88 aa)
Chain F
1379–1466(88 aa)
Chain G
1379–1466(88 aa)
Chain H
1379–1466(88 aa)
Chain I
1379–1466(88 aa)
Chain J
1379–1466(88 aa)
Chain K
1379–1466(88 aa)
Chain L
1379–1466(88 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
R-free 0.285
|
|
6X6A
Cryo-EM structure of NLRP1-DPP9 complex
Deposited 2020-05-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain B
1–1212(1212 aa)
Chain C
1213–1473(261 aa)
Chain E
1–1212(1212 aa)
Chain F
1213–1473(261 aa)
Chain G
1213–1473(261 aa)
Chain I
1213–1473(261 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;25 mM Tris pH 7.5, 150 mM NaCl, 1 mM TCEP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
6X6C
Cryo-EM structure of NLRP1-DPP9-VbP complex
Deposited 2020-05-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain E
1–1473(1473 aa)
Chain F
1–1473(1473 aa)
|
Not recorded
|
GK2 [(2~{R})-1-[(2~{R})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;25 mM Tris pH 7.5, 150 mM NaCl, 1 mM TCEP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7WGE
Human NLRP1 complexed with thioredoxin
Deposited 2021-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
95–994(900 aa)
|
Not recorded
|
AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8ZGD
The Crystal Structure of the NLRP1_LRR domain from Biortus.
Deposited 2024-05-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
791–990(200 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;20mM MgCl2, 0.1M Tris pH 8.0, 19% polyacrylic acid 5100
|
Resolution 2.05 Å
R-free 0.221
|
|
9BJ9
Human CRL-2 ZYG11B binding to human NLRP1 Gly/N degron
Deposited 2024-04-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain P
131–139(9 aa)
Fragment:residues 131-139 (Uniprot numbering)
|
Not recorded
|
ZN ZINC ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|