6z9t

Transcription termination intermediate complex 5

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription termination factor Rho

Escherichia coli

UniProt P0AG30

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination/antitermination protein NusA × 1 (C3SSN7) DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z4) DNA-directed RNA polymerase subunit omega × 1 (P0A800) DNA-directed RNA polymerase subunit beta × 1 (P0A8V4) ;DNA-directed RNA polymerase subunit beta' ; × 1 (C3SIA2) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RHO_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain a; PDBConstruct 1–419; UniProt 1–419 Author chain b; PDBConstruct 1–419; UniProt 1–419 Author chain c; PDBConstruct 1–419; UniProt 1–419 Author chain d; PDBConstruct 1–419; UniProt 1–419 Author chain e; PDBConstruct 1–419; UniProt 1–419 Author chain f; PDBConstruct 1–419; UniProt 1–419

Transcription termination/antitermination protein NusA

Escherichia coli

UniProt C3SSN7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination factor Rho × 6 (P0AG30) DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z4) DNA-directed RNA polymerase subunit omega × 1 (P0A800) DNA-directed RNA polymerase subunit beta × 1 (P0A8V4) ;DNA-directed RNA polymerase subunit beta' ; × 1 (C3SIA2) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C3SSN7_ECOLX
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 3–497; UniProt 1–495

DNA-directed RNA polymerase subunit alpha

Escherichia coli

UniProt P0A7Z4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination factor Rho × 6 (P0AG30) Transcription termination/antitermination protein NusA × 1 (C3SSN7) DNA-directed RNA polymerase subunit omega × 1 (P0A800) DNA-directed RNA polymerase subunit beta × 1 (P0A8V4) ;DNA-directed RNA polymerase subunit beta' ; × 1 (C3SIA2) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOA_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain U; PDBConstruct 1–329; UniProt 1–329 Author chain V; PDBConstruct 1–329; UniProt 1–329

DNA-directed RNA polymerase subunit omega

Escherichia coli

UniProt P0A800

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination factor Rho × 6 (P0AG30) Transcription termination/antitermination protein NusA × 1 (C3SSN7) DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z4) DNA-directed RNA polymerase subunit beta × 1 (P0A8V4) ;DNA-directed RNA polymerase subunit beta' ; × 1 (C3SIA2) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOZ_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain W; PDBConstruct 1–91; UniProt 1–91

DNA-directed RNA polymerase subunit beta

Escherichia coli

UniProt P0A8V4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination factor Rho × 6 (P0AG30) Transcription termination/antitermination protein NusA × 1 (C3SSN7) DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z4) DNA-directed RNA polymerase subunit omega × 1 (P0A800) ;DNA-directed RNA polymerase subunit beta' ; × 1 (C3SIA2) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPOB_ECO57
Isoform —
PDB entities 5
Chains and sequence ranges Author chain X; PDBConstruct 1–1342; UniProt 1–1342

;DNA-directed RNA polymerase subunit beta' ;

Escherichia coli

UniProt C3SIA2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 Transcription termination factor Rho × 6 (P0AG30) Transcription termination/antitermination protein NusA × 1 (C3SSN7) DNA-directed RNA polymerase subunit alpha × 2 (P0A7Z4) DNA-directed RNA polymerase subunit omega × 1 (P0A800) DNA-directed RNA polymerase subunit beta × 1 (P0A8V4) template strand × 1 non template strand × 1 rut RNA × 1 ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 6 BERYLLIUM TRIFLUORIDE ION × 5 ZINC ION × 2 water × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C3SIA2_ECOLX
Isoform —
PDB entities 6
Chains and sequence ranges Author chain Y; PDBConstruct 1–1407; UniProt 1–1407

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6z9t
Deposition date deposition_date2020-06-04
Structure title titleTranscription termination intermediate complex 5
Keywords keywordsTermination, Helicase, RNA Polymerase, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6z9t__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6z9t__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6z9t__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)66.03 Å
Rg (electron density)66.09 Å
Total Rg66.16 Å
Atom count51400
Residues6400
Excluded volume910140 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6z9t__assembly_1__model_1 pentadecameric (15) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (14)

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7. Citations (1)