7mk9

Complex structure of trailing EC of EC+EC (trailing EC-focused)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase subunit

OrganismNot specified

UniProt A0A6A5Q1P2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q1P2_YEASX
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–1733; UniProt 1–1733

DNA-directed RNA polymerase subunit beta

OrganismNot specified

UniProt A0A6A5Q4H2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q4H2_YEASX
Isoform —
PDB entities 4
Chains and sequence ranges Author chain B; PDBConstruct 1–1224; UniProt 1–1224

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt A0A6A5Q0Z3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q0Z3_YEASX
Isoform —
PDB entities 5
Chains and sequence ranges Author chain C; PDBConstruct 1–318; UniProt 1–318

DNA-directed RNA polymerase II subunit RPB4

OrganismNot specified

UniProt A0A6A5PTI6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PTI6_YEASX
Isoform —
PDB entities 6
Chains and sequence ranges Author chain D; PDBConstruct 1–221; UniProt 1–221

DNA-directed RNA polymerases I, II, and III subunit RPABC1

OrganismNot specified

UniProt A0A6A5Q456

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q456_YEASX
Isoform —
PDB entities 7
Chains and sequence ranges Author chain E; PDBConstruct 1–215; UniProt 1–215

DNA-directed RNA polymerases I,II,and III subunit RPABC2

OrganismNot specified

UniProt A0A6L0ZRI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6L0ZRI7_YEASX
Isoform —
PDB entities 8
Chains and sequence ranges Author chain F; PDBConstruct 1–155; UniProt 1–155

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt A0A6A5Q270

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q270_YEASX
Isoform —
PDB entities 9
Chains and sequence ranges Author chain G; PDBConstruct 1–171; UniProt 1–171

DNA-directed RNA polymerases I, II, and III subunit RPABC3

OrganismNot specified

UniProt A0A6A5Q8C2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q8C2_YEASX
Isoform —
PDB entities 10
Chains and sequence ranges Author chain H; PDBConstruct 1–146; UniProt 1–146

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt A0A7I9EWC2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7I9EWC2_YEASX
Isoform —
PDB entities 11
Chains and sequence ranges Author chain I; PDBConstruct 1–122; UniProt 1–122

DNA-directed RNA polymerases II subunit RPABC5

OrganismNot specified

UniProt A0A6A5Q7Q6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q7Q6_YEASX
Isoform —
PDB entities 12
Chains and sequence ranges Author chain J; PDBConstruct 1–70; UniProt 1–70

DNA-directed RNA polymerase II subunit RPB11

OrganismNot specified

UniProt A0A6A5Q7A1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q7A1_YEASX
Isoform —
PDB entities 13
Chains and sequence ranges Author chain K; PDBConstruct 1–120; UniProt 1–120

DNA-directed RNA polymerases II subunit RPABC4

OrganismNot specified

UniProt A0A6A5PY05

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PY05_YEASX
Isoform —
PDB entities 14
Chains and sequence ranges Author chain L; PDBConstruct 1–70; UniProt 1–70

Transcription initiation factor IIF subunit alpha

OrganismNot specified

UniProt P41895

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit beta × 1 (A0A6A5PZ00) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FA_YEAST
Isoform —
PDB entities 16
Chains and sequence ranges Author chain Q; PDBConstruct 1–735; UniProt 1–735

Transcription initiation factor IIF subunit beta

OrganismNot specified

UniProt A0A6A5PZ00

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 14 DNA 2 RNA 1 DNA (40-MER) × 1 DNA (40-MER) × 1 DNA-directed RNA polymerase subunit × 1 (A0A6A5Q1P2) DNA-directed RNA polymerase subunit beta × 1 (A0A6A5Q4H2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A6A5Q0Z3) DNA-directed RNA polymerase II subunit RPB4 × 1 (A0A6A5PTI6) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (A0A6A5Q456) DNA-directed RNA polymerases I,II,and III subunit RPABC2 × 1 (A0A6L0ZRI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A6A5Q270) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A6A5Q8C2) DNA-directed RNA polymerase II subunit RPB9 × 1 (A0A7I9EWC2) DNA-directed RNA polymerases II subunit RPABC5 × 1 (A0A6A5Q7Q6) DNA-directed RNA polymerase II subunit RPB11 × 1 (A0A6A5Q7A1) DNA-directed RNA polymerases II subunit RPABC4 × 1 (A0A6A5PY05) ;RNA (5'-R(P*UP*CP*GP*AP*GP*AP*GP*GP*AP*UP*CP*CP*CP*AP*A)-3') ; × 1 Transcription initiation factor IIF subunit alpha × 1 (P41895) ZINC ION × 8 MAGNESIUM ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PZ00_YEASX
Isoform —
PDB entities 17
Chains and sequence ranges Author chain M; PDBConstruct 1–400; UniProt 1–400

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7mk9
Deposition date deposition_date2021-04-22
Structure title titleComplex structure of trailing EC of EC+EC (trailing EC-focused)
Keywords keywordspol II, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7mk9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7mk9__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7mk9__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)53.96 Å
Rg (electron density)53.85 Å
Total Rg53.93 Å
Atom count36122
Residues4414
Excluded volume636870 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7mk9__assembly_1__model_1 heptadecameric (17) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (19)

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6. Fold Classification (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

Domain ID domain_id7mk9A01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology274 — Enzyme I; Chain A, domain 2
Homologous superfamily homologous superfamily100 — RNA polymerase Rpb1, domain 3
Domain ID domain_id7mk9A02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology150 — DNA polymerase; domain 1
Homologous superfamily homologous superfamily390 —
Domain ID domain_id7mk9A03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily140 —
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7. Citations (1)