7oph

NaK S-DI mutant with Na+ and K+

Method: X-RAY DIFFRACTION Dmax: 69.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 19–110 Chain B; UniProt 19–110 Mutation:D66S G67- N68D F69I K POTASSIUM ION × 12 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 22 CL CHLORIDE ION × 4 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 12 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;200 mM KCl, 100 mM HEPES (KOH) pH 7.5, 62% MPD (2-Methyl-2,4-pentanediol racemate) Resolution 1.42 Å R-free 0.179

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 82 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–92; UniProt 19–110 Author chain B; PDBConstruct 2–92; UniProt 19–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7oph

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7oph
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7oph
Deposition date deposition_date2021-05-31
Structure title titleNaK S-DI mutant with Na+ and K+
Keywords keywordsION CHANNEL, PROKARYOTE, MEMBRANE PROTEIN, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.85
Radius of gyration Rg (electron density) rg_electron18.72
Forward intensity I(0) i06033100.00
Molecular weight molecular_weight22769.0 kDa
Excluded volume excluded_volume30662 ų
Envelope volume envelope_volume34382 ų
Hydration-shell volume shell_volume16147 ų
Envelope diameter envelope_diameter70.6
Shell Rg shell_rg24.13
Envelope Rg envelope_rg19.22
Shape Rg shape_rg18.69
Total Rg total_rg19.95
Total atoms total_atoms3350
Residues n_residues187
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax69.0
Rg (real space) rg_real19.89
Rg uncertainty (real space) rg_real_error0.55
I(0) (real space) i0_real6.0330e+06
I(0) uncertainty (real space) i0_real_error7.8980e+04
Rg (reciprocal space) rg_reciprocal19.89
I(0) (reciprocal space) i0_reciprocal6033000.0000
Solution quality estimate total_estimate0.7869
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary26.2
Skewness Skewness skewness0.373
Kurtosis Kurtosis kurtosis-0.189
Angular range angular_range— – 0.4000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha876700.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.789; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.861; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (2)

9. Files and Curves (10)