7peq

Model of the outer rings of the human nuclear pore complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Nuclear pore complex protein Nup133

OrganismNot specified

UniProt Q8WUM0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU133_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain AC; PDBConstruct 1–1156; UniProt 1–1156 Author chain BC; PDBConstruct 1–1156; UniProt 1–1156 Author chain CC; PDBConstruct 1–1156; UniProt 1–1156 Author chain DC; PDBConstruct 1–1156; UniProt 1–1156

Nuclear pore complex protein Nup107

OrganismNot specified

UniProt P57740

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU107_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain AD; PDBConstruct 1–925; UniProt 1–925 Author chain BD; PDBConstruct 1–925; UniProt 1–925 Author chain CD; PDBConstruct 1–925; UniProt 1–925 Author chain DD; PDBConstruct 1–925; UniProt 1–925

Nuclear pore complex protein Nup96

OrganismNot specified

UniProt P52948

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP98_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain AE; PDBConstruct 1–937; UniProt 881–1817 Author chain BE; PDBConstruct 1–937; UniProt 881–1817 Author chain CE; PDBConstruct 1–937; UniProt 881–1817 Author chain DE; PDBConstruct 1–937; UniProt 881–1817

Protein SEC13 homolog

OrganismNot specified

UniProt P55735

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEC13_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain AF; PDBConstruct 1–322; UniProt 1–322 Author chain BF; PDBConstruct 1–322; UniProt 1–322 Author chain CF; PDBConstruct 1–322; UniProt 1–322 Author chain DF; PDBConstruct 1–322; UniProt 1–322

Nucleoporin SEH1

OrganismNot specified

UniProt Q96EE3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SEH1_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain AG; PDBConstruct 1–360; UniProt 1–360 Author chain BG; PDBConstruct 1–360; UniProt 1–360 Author chain CG; PDBConstruct 1–360; UniProt 1–360 Author chain DG; PDBConstruct 1–360; UniProt 1–360

Nuclear pore complex protein Nup85

OrganismNot specified

UniProt Q9BW27

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP85_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain AH; PDBConstruct 1–656; UniProt 1–656 Author chain BH; PDBConstruct 1–656; UniProt 1–656 Author chain CH; PDBConstruct 1–656; UniProt 1–656 Author chain DH; PDBConstruct 1–656; UniProt 1–656

Nucleoporin Nup43

OrganismNot specified

UniProt Q8NFH3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nuclear pore complex protein Nup160 × 32 (Q12769) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP43_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain AI; PDBConstruct 1–380; UniProt 1–380 Author chain BI; PDBConstruct 1–380; UniProt 1–380 Author chain CI; PDBConstruct 1–380; UniProt 1–380 Author chain DI; PDBConstruct 1–380; UniProt 1–380

Nuclear pore complex protein Nup160

OrganismNot specified

UniProt Q12769

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nucleoporin Nup37 × 32 (Q8NFH4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NU160_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain AJ; PDBConstruct 1–1436; UniProt 1–1436 Author chain BJ; PDBConstruct 1–1436; UniProt 1–1436 Author chain CJ; PDBConstruct 1–1436; UniProt 1–1436 Author chain DJ; PDBConstruct 1–1436; UniProt 1–1436

Nucleoporin Nup37

OrganismNot specified

UniProt Q8NFH4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 288 Nuclear pore complex protein Nup133 × 32 (Q8WUM0) Nuclear pore complex protein Nup107 × 32 (P57740) Nuclear pore complex protein Nup96 × 32 (P52948) Protein SEC13 homolog × 32 (P55735) Nucleoporin SEH1 × 32 (Q96EE3) Nuclear pore complex protein Nup85 × 32 (Q9BW27) Nucleoporin Nup43 × 32 (Q8NFH3) Nuclear pore complex protein Nup160 × 32 (Q12769) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NUP37_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain AK; PDBConstruct 1–326; UniProt 1–326 Author chain BK; PDBConstruct 1–326; UniProt 1–326 Author chain CK; PDBConstruct 1–326; UniProt 1–326 Author chain DK; PDBConstruct 1–326; UniProt 1–326

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7peq
Deposition date deposition_date2021-08-11
Structure title titleModel of the outer rings of the human nuclear pore complex
Keywords keywordsNuclear Pore Complex, NPC, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7peq__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7peq__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7peq__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)569.90 Å
Total Rg569.90 Å
Atom count729632
Residues147232
Excluded volume11775000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7peq__assembly_1__model_1 288-meric (288) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (9)

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7. Citations (1)