7q4p

U2 snRNP after ATP-dependent remodelling

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Splicing factor 3A subunit 2

OrganismNot specified

UniProt Q15428

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3A2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–464; UniProt 1–464

Splicing factor 3A subunit 3

OrganismNot specified

UniProt Q12874

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3A3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 9; PDBConstruct 1–501; UniProt 1–501

Splicing factor 3B subunit 1

OrganismNot specified

UniProt O75533

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B1_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain A; PDBConstruct 1–1304; UniProt 1–1304

Splicing factor 3B subunit 2

OrganismNot specified

UniProt Q13435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B2_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain B; PDBConstruct 1–895; UniProt 1–895

Splicing factor 3B subunit 3

OrganismNot specified

UniProt Q15393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B3_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain C; PDBConstruct 1–1217; UniProt 1–1217

Splicing factor 3B subunit 5

OrganismNot specified

UniProt Q9BWJ5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B5_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain E; PDBConstruct 1–86; UniProt 1–86

PHD finger-like domain-containing protein 5A

OrganismNot specified

UniProt Q7RTV0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 7 RNA 1 Splicing factor 3A subunit 2 × 1 (Q15428) U2 snRNA × 1 Splicing factor 3A subunit 3 × 1 (Q12874) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) ZINC ION × 5 water × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PHF5A_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain G; PDBConstruct 1–110; UniProt 1–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7q4p
Deposition date deposition_date2021-11-01
Structure title titleU2 snRNP after ATP-dependent remodelling
Keywords keywordssnRNP, Spliceosome, U2 snRNP, Splicing, NUCLEAR PROTEIN; NUCLEAR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7q4p__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7q4p__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7q4p__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)37.62 Å
Rg (electron density)36.32 Å
Total Rg36.93 Å
Atom count13204
Residues1566
Excluded volume231930 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7q4p__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (10)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id7q4pC01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
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7. Citations (1)