5o9z

Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Pre-mRNA-processing-splicing factor 8

OrganismNot specified

UniProt Q6P2Q9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–2335; UniProt 1–2335

116 kDa U5 small nuclear ribonucleoprotein component

OrganismNot specified

UniProt Q15029

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5S1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–972; UniProt 1–972

U5 small nuclear ribonucleoprotein 200 kDa helicase

OrganismNot specified

UniProt O75643

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U520_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–2136; UniProt 1–2136

U5 small nuclear ribonucleoprotein 40 kDa protein

OrganismNot specified

UniProt Q96DI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR40_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–357; UniProt 1–357

U4/U6 small nuclear ribonucleoprotein Prp3

OrganismNot specified

UniProt O43395

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRPF3_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–683; UniProt 1–683

U4/U6 small nuclear ribonucleoprotein Prp4

OrganismNot specified

UniProt O43172

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP4_HUMAN
Isoform O43172-2
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–521; UniProt 1–521

Pre-mRNA-processing factor 6

OrganismNot specified

UniProt O94906

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP6_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–941; UniProt 1–941

U4/U6 small nuclear ribonucleoprotein Prp31

OrganismNot specified

UniProt Q8WWY3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP31_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–499; UniProt 1–499

Pre-mRNA-splicing factor 38A

OrganismNot specified

UniProt Q8NAV1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PR38A_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–312; UniProt 1–312

Thioredoxin-like protein 4A

OrganismNot specified

UniProt P83876

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TXN4A_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–142; UniProt 1–142

Microfibrillar-associated protein 1

OrganismNot specified

UniProt P55081

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MFAP1_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–439; UniProt 1–439

WD40 repeat-containing protein SMU1

OrganismNot specified

UniProt Q2TAY7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMU1_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–513; UniProt 1–513

Peptidyl-prolyl cis-trans isomerase H

OrganismNot specified

UniProt O43447

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPIH_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 1–177; UniProt 1–177

Zinc finger matrin-type protein 2

OrganismNot specified

UniProt Q96NC0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ZMAT2_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain N; PDBConstruct 1–199; UniProt 1–199

NHP2-like protein 1

OrganismNot specified

UniProt P55769

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NH2L1_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain O; PDBConstruct 1–128; UniProt 1–128

U4/U6.U5 tri-snRNP-associated protein 1

OrganismNot specified

UniProt O43290

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNUT1_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain P; PDBConstruct 1–800; UniProt 1–800

WW domain-binding protein 4

OrganismNot specified

UniProt O75554

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name WBP4_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain Q; PDBConstruct 1–376; UniProt 1–376

Protein Red

OrganismNot specified

UniProt Q13123

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RED_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain R; PDBConstruct 1–557; UniProt 1–557

Small nuclear ribonucleoprotein Sm D2

OrganismNot specified

UniProt P62316

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD2_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain S; PDBConstruct 1–118; UniProt 1–118 Author chain a; PDBConstruct 1–118; UniProt 1–118 Author chain h; PDBConstruct 1–118; UniProt 1–118

Small nuclear ribonucleoprotein F

OrganismNot specified

UniProt P62306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXF_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain T; PDBConstruct 1–86; UniProt 1–86 Author chain b; PDBConstruct 1–86; UniProt 1–86 Author chain i; PDBConstruct 1–86; UniProt 1–86

Small nuclear ribonucleoprotein E

OrganismNot specified

UniProt P62304

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXE_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain U; PDBConstruct 1–92; UniProt 1–92 Author chain c; PDBConstruct 1–92; UniProt 1–92 Author chain j; PDBConstruct 1–92; UniProt 1–92

Small nuclear ribonucleoprotein G

OrganismNot specified

UniProt P62308

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXG_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain V; PDBConstruct 1–76; UniProt 1–76 Author chain d; PDBConstruct 1–76; UniProt 1–76 Author chain k; PDBConstruct 1–76; UniProt 1–76

Small nuclear ribonucleoprotein Sm D3

OrganismNot specified

UniProt P62318

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD3_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain W; PDBConstruct 1–126; UniProt 1–126 Author chain e; PDBConstruct 1–126; UniProt 1–126 Author chain l; PDBConstruct 1–126; UniProt 1–126

;Small nuclear ribonucleoprotein-associated proteins B and B' ;

OrganismNot specified

UniProt P14678

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RSMB_HUMAN
Isoform —
PDB entities 24
Chains and sequence ranges Author chain X; PDBConstruct 1–240; UniProt 1–240 Author chain f; PDBConstruct 1–240; UniProt 1–240 Author chain m; PDBConstruct 1–240; UniProt 1–240

Small nuclear ribonucleoprotein Sm D1

OrganismNot specified

UniProt P62314

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD1_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain Z; PDBConstruct 1–119; UniProt 1–119 Author chain g; PDBConstruct 1–119; UniProt 1–119 Author chain n; PDBConstruct 1–119; UniProt 1–119

U6 snRNA-associated Sm-like protein LSm2

OrganismNot specified

UniProt Q9Y333

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM2_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain o; PDBConstruct 1–95; UniProt 1–95

U6 snRNA-associated Sm-like protein LSm3

OrganismNot specified

UniProt P62310

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM3_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain p; PDBConstruct 1–102; UniProt 1–102

U6 snRNA-associated Sm-like protein LSm4

OrganismNot specified

UniProt Q9Y4Z0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM4_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain q; PDBConstruct 1–139; UniProt 1–139

U6 snRNA-associated Sm-like protein LSm5

OrganismNot specified

UniProt Q9Y4Y9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM5_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain r; PDBConstruct 1–91; UniProt 1–91

U6 snRNA-associated Sm-like protein LSm6

OrganismNot specified

UniProt P62312

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM6_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain s; PDBConstruct 1–80; UniProt 1–80

U6 snRNA-associated Sm-like protein LSm7

OrganismNot specified

UniProt Q9UK45

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM7_HUMAN
Isoform —
PDB entities 31
Chains and sequence ranges Author chain t; PDBConstruct 1–103; UniProt 1–103

U6 snRNA-associated Sm-like protein LSm8

OrganismNot specified

UniProt O95777

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LSM8_HUMAN
Isoform —
PDB entities 32
Chains and sequence ranges Author chain u; PDBConstruct 1–96; UniProt 1–96

Splicing factor 3B subunit 1

OrganismNot specified

UniProt O75533

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B1_HUMAN
Isoform —
PDB entities 33
Chains and sequence ranges Author chain v; PDBConstruct 1–1304; UniProt 1–1304

Splicing factor 3B subunit 3 (SF3B3)

OrganismNot specified

UniProt Q15393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B3_HUMAN
Isoform —
PDB entities 34
Chains and sequence ranges Author chain w; PDBConstruct 1–1217; UniProt 1–1217

Splicing factor 3B subunit 5

OrganismNot specified

UniProt Q9BWJ5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B5_HUMAN
Isoform —
PDB entities 35
Chains and sequence ranges Author chain x; PDBConstruct 1–86; UniProt 1–86

PHD finger-like domain-containing protein 5A

OrganismNot specified

UniProt Q7RTV0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PHF5A_HUMAN
Isoform —
PDB entities 36
Chains and sequence ranges Author chain y; PDBConstruct 1–110; UniProt 1–110

;U2 small nuclear ribonucleoprotein A' ;

OrganismNot specified

UniProt P09661

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RU2A_HUMAN
Isoform —
PDB entities 37
Chains and sequence ranges Author chain z; PDBConstruct 1–256; UniProt 1–255

;U2 small nuclear ribonucleoprotein B'' ;

OrganismNot specified

UniProt P08579

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 52 RNA 5 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) Pre-mRNA-processing factor 6 × 1 (O94906) U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) Pre-mRNA-splicing factor 38A × 1 (Q8NAV1) Thioredoxin-like protein 4A × 1 (P83876) Microfibrillar-associated protein 1 × 1 (P55081) WD40 repeat-containing protein SMU1 × 1 (Q2TAY7) Peptidyl-prolyl cis-trans isomerase H × 1 (O43447) Zinc finger matrin-type protein 2 × 1 (Q96NC0) NHP2-like protein 1 × 1 (P55769) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) WW domain-binding protein 4 × 1 (O75554) Protein Red × 1 (Q13123) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) U6 snRNA-associated Sm-like protein LSm2 × 1 (Q9Y333) U6 snRNA-associated Sm-like protein LSm3 × 1 (P62310) U6 snRNA-associated Sm-like protein LSm4 × 1 (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm5 × 1 (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm6 × 1 (P62312) U6 snRNA-associated Sm-like protein LSm7 × 1 (Q9UK45) U6 snRNA-associated Sm-like protein LSm8 × 1 (O95777) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 (SF3B3) × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) MINX pre-mRNA × 1 Human gene for small nuclear RNA U2 (snRNA U2) × 1 Homo sapiens U4A snRNA × 1 Homo sapiens U5 A small nuclear RNA × 1 Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RU2B_HUMAN
Isoform —
PDB entities 38
Chains and sequence ranges Author chain 1; PDBConstruct 1–225; UniProt 1–225

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5o9z
Deposition date deposition_date2017-06-20
Structure title titleCryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)
Keywords keywordsSpliceosome, pre-mRNA splicing, macromolecular complex, splicing; SPLICING
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5o9z__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5o9z__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5o9z__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)117.70 Å
Total Rg141.10 Å
Atom count55520
Residues9464
Excluded volume1399900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5o9z__assembly_1__model_1 57-meric (57) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (43)

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6. Fold Classification (SCOP + CATH) 11 domains

SCOP 2.08 (11 domains)

Domain ID domain_idd5o9ze1
Class classj — Peptides
Fold Fold foldj.144 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp3 N-terminal domain-like
Superfamily Superfamily superfamilyj.144.1 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp3 N-terminal domain-like
Family Family familyj.144.1.1 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp3 N-terminal domain-like
Domain ID domain_idd5o9ze2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.10 — Acylphosphatase/BLUF domain-like
Family Family familyd.58.10.3 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp3 C-terminal domain-like
Domain ID domain_idd5o9zg_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.8 — TPR-like
Family Family familya.118.8.1 — Tetratricopeptide repeat (TPR)
Domain ID domain_idd5o9zh1
Class classj — Peptides
Fold Fold foldj.149 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp31 C-terminal domain-like
Superfamily Superfamily superfamilyj.149.1 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp31 C-terminal domain-like
Family Family familyj.149.1.1 — Spliceosomal U4/U6 small nuclear ribonucleoprotein Prp31 C-terminal domain-like
Domain ID domain_idd5o9zh2
Class classa — All alpha proteins
Fold Fold folda.183 — Nop domain
Superfamily Superfamily superfamilya.183.1 — Nop domain
Family Family familya.183.1.1 — Nop domain
Domain ID domain_idd5o9zi_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.30 — Pre-mRNA splicing factor Prp38 N-terminal-like
Family Family familya.118.30.1 — Pre-mRNA splicing factor Prp38-like
Domain ID domain_idd5o9zk_
Class classj — Peptides
Fold Fold foldj.145 — Microfibrillar-associated protein 1 fragment
Superfamily Superfamily superfamilyj.145.1 — Microfibrillar-associated protein 1 fragment
Family Family familyj.145.1.1 — Microfibrillar-associated protein 1 fragment
Domain ID domain_idd5o9zp_
Class classj — Peptides
Fold Fold foldj.143 — Pre-mRNA splicing factor Snu66-like
Superfamily Superfamily superfamilyj.143.1 — Pre-mRNA splicing factor Snu66-like
Family Family familyj.143.1.1 — Pre-mRNA splicing factor Sart1 / Snu66-like
Domain ID domain_idd5o9zv_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.1 — ARM repeat
Family Family familya.118.1.2 — HEAT repeat
Domain ID domain_idd5o9zx_
Class classj — Peptides
Fold Fold foldj.146 — Splicing factor 3B subunit 5 fragment
Superfamily Superfamily superfamilyj.146.1 — Splicing factor 3B subunit 5 fragment
Family Family familyj.146.1.1 — Splicing factor 3B subunit 5 fragment
Domain ID domain_idd5o9zy_
Class classg — Small proteins
Fold Fold foldg.101 — Triquetra knot
Superfamily Superfamily superfamilyg.101.1 — Pre-mRNA splicing factor Phf5-like
Family Family familyg.101.1.1 — Pre-mRNA splicing factor Phf5-like
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7. Citations (1)