6icz

Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Protein mago nashi homolog 2

OrganismNot specified

UniProt Q96A72

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MGN2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain v; PDBConstruct 1–148; UniProt 1–148

RNA-binding protein 8A

OrganismNot specified

UniProt Q9Y5S9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBM8A_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain w; PDBConstruct 1–174; UniProt 1–174

Eukaryotic initiation factor 4A-III

OrganismNot specified

UniProt P38919

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name IF4A3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain u; PDBConstruct 1–411; UniProt 1–411

Protein CASC3

OrganismNot specified

UniProt O15234

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CASC3_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain x; PDBConstruct 1–703; UniProt 1–703

Pre-mRNA-processing-splicing factor 8

OrganismNot specified

UniProt Q6P2Q9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain A; PDBConstruct 1–2335; UniProt 1–2335

116 kDa U5 small nuclear ribonucleoprotein component

OrganismNot specified

UniProt Q15029

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5S1_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain C; PDBConstruct 1–972; UniProt 1–972

U5 small nuclear ribonucleoprotein 40 kDa protein

OrganismNot specified

UniProt Q96DI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR40_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain E; PDBConstruct 1–357; UniProt 1–357

Crooked neck-like protein 1

OrganismNot specified

UniProt Q9BZJ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CRNL1_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain J; PDBConstruct 1–848; UniProt 1–848

Cell division cycle 5-like protein

OrganismNot specified

UniProt Q99459

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC5L_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain L; PDBConstruct 1–802; UniProt 1–802

Pre-mRNA-splicing factor SYF2

OrganismNot specified

UniProt O95926

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SYF2_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain M; PDBConstruct 1–243; UniProt 1–243

Protein BUD31 homolog

OrganismNot specified

UniProt P41223

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BUD31_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain N; PDBConstruct 1–144; UniProt 1–144

Pre-mRNA-splicing factor RBM22

OrganismNot specified

UniProt Q9NW64

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBM22_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain O; PDBConstruct 1–420; UniProt 1–420

Spliceosome-associated protein CWC15 homolog

OrganismNot specified

UniProt Q9P013

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC15_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain P; PDBConstruct 1–229; UniProt 1–229

SNW domain-containing protein 1

OrganismNot specified

UniProt Q13573

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNW1_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain R; PDBConstruct 1–536; UniProt 1–536

Peptidyl-prolyl cis-trans isomerase-like 1

OrganismNot specified

UniProt Q9Y3C6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPIL1_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain S; PDBConstruct 1–166; UniProt 1–166

Pleiotropic regulator 1

OrganismNot specified

UniProt O43660

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PLRG1_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain T; PDBConstruct 1–514; UniProt 1–514

Serine/arginine repetitive matrix protein 2

OrganismNot specified

UniProt Q9UQ35

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SRRM2_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain U; PDBConstruct 1–2752; UniProt 1–2752

Pre-mRNA-splicing factor CWC22 homolog

OrganismNot specified

UniProt Q9HCG8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC22_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain V; PDBConstruct 1–908; UniProt 1–908

Pre-mRNA-processing factor 17

OrganismNot specified

UniProt O60508

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP17_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain W; PDBConstruct 1–579; UniProt 1–579

PRKR-interacting protein 1

OrganismNot specified

UniProt Q9H875

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PKRI1_HUMAN
Isoform —
PDB entities 24
Chains and sequence ranges Author chain X; PDBConstruct 1–184; UniProt 1–184

Pre-mRNA-splicing factor SLU7

OrganismNot specified

UniProt O95391

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SLU7_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain Z; PDBConstruct 1–586; UniProt 1–586

Pre-mRNA-splicing factor SYF1

OrganismNot specified

UniProt Q9HCS7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SYF1_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain I; PDBConstruct 1–855; UniProt 1–855

Peptidyl-prolyl cis-trans isomerase E

OrganismNot specified

UniProt Q9UNP9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPIE_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain y; PDBConstruct 1–301; UniProt 1–301

RNA helicase aquarius

OrganismNot specified

UniProt O60306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AQR_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain Q; PDBConstruct 1–1485; UniProt 1–1485

Small nuclear ribonucleoprotein Sm D3

OrganismNot specified

UniProt P62318

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD3_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain a; PDBConstruct 1–126; UniProt 1–126 Author chain h; PDBConstruct 1–126; UniProt 1–126

Small nuclear ribonucleoprotein-associated protein

OrganismNot specified

UniProt Q66K91

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q66K91_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain b; PDBConstruct 1–231; UniProt 1–231 Author chain i; PDBConstruct 1–231; UniProt 1–231

Small nuclear ribonucleoprotein Sm D1

OrganismNot specified

UniProt P62314

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD1_HUMAN
Isoform —
PDB entities 31
Chains and sequence ranges Author chain c; PDBConstruct 1–119; UniProt 1–119 Author chain j; PDBConstruct 1–119; UniProt 1–119

Small nuclear ribonucleoprotein Sm D2

OrganismNot specified

UniProt P62316

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD2_HUMAN
Isoform —
PDB entities 32
Chains and sequence ranges Author chain d; PDBConstruct 1–118; UniProt 1–118 Author chain k; PDBConstruct 1–118; UniProt 1–118

Small nuclear ribonucleoprotein F

OrganismNot specified

UniProt P62306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXF_HUMAN
Isoform —
PDB entities 33
Chains and sequence ranges Author chain f; PDBConstruct 1–86; UniProt 1–86 Author chain m; PDBConstruct 1–86; UniProt 1–86

Small nuclear ribonucleoprotein E

OrganismNot specified

UniProt P62304

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXE_HUMAN
Isoform —
PDB entities 34
Chains and sequence ranges Author chain e; PDBConstruct 1–92; UniProt 1–92 Author chain l; PDBConstruct 1–92; UniProt 1–92

Small nuclear ribonucleoprotein G

OrganismNot specified

UniProt P62308

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXG_HUMAN
Isoform —
PDB entities 35
Chains and sequence ranges Author chain g; PDBConstruct 1–76; UniProt 1–76 Author chain n; PDBConstruct 1–76; UniProt 1–76

;U2 small nuclear ribonucleoprotein A' ;

OrganismNot specified

UniProt P09661

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RU2A_HUMAN
Isoform —
PDB entities 36
Chains and sequence ranges Author chain o; PDBConstruct 1–255; UniProt 1–255

;U2 small nuclear ribonucleoprotein B'' ;

OrganismNot specified

UniProt P08579

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RU2B_HUMAN
Isoform —
PDB entities 37
Chains and sequence ranges Author chain p; PDBConstruct 1–225; UniProt 1–225

ATP-dependent RNA helicase DHX8

OrganismNot specified

UniProt Q14562

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DHX8_HUMAN
Isoform —
PDB entities 38
Chains and sequence ranges Author chain Y; PDBConstruct 1–1220; UniProt 1–1220

Pre-mRNA-splicing factor SPF27

OrganismNot specified

UniProt O75934

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPF27_HUMAN
Isoform —
PDB entities 39
Chains and sequence ranges Author chain K; PDBConstruct 1–225; UniProt 1–225

Pre-mRNA-processing factor 19

OrganismNot specified

UniProt Q9UMS4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP19_HUMAN
Isoform —
PDB entities 40
Chains and sequence ranges Author chain q; PDBConstruct 1–504; UniProt 1–504 Author chain r; PDBConstruct 1–504; UniProt 1–504 Author chain s; PDBConstruct 1–504; UniProt 1–504 Author chain t; PDBConstruct 1–504; UniProt 1–504

U5 small nuclear ribonucleoprotein 200 kDa helicase

OrganismNot specified

UniProt O75643

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 47 RNA 4 Protein mago nashi homolog 2 × 1 (Q96A72) RNA-binding protein 8A × 1 (Q9Y5S9) Eukaryotic initiation factor 4A-III × 1 (P38919) Protein CASC3 × 1 (O15234) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) U6snRNA × 1 pre-mRNA × 1 U2snRNA × 1 Crooked neck-like protein 1 × 1 (Q9BZJ0) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor SYF2 × 1 (O95926) Protein BUD31 homolog × 1 (P41223) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Pleiotropic regulator 1 × 1 (O43660) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Pre-mRNA-processing factor 17 × 1 (O60508) PRKR-interacting protein 1 × 1 (Q9H875) Pre-mRNA-splicing factor SLU7 × 1 (O95391) Pre-mRNA-splicing factor SYF1 × 1 (Q9HCS7) Peptidyl-prolyl cis-trans isomerase E × 1 (Q9UNP9) RNA helicase aquarius × 1 (O60306) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein-associated protein × 2 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) ;U2 small nuclear ribonucleoprotein A' ; × 1 (P09661) ;U2 small nuclear ribonucleoprotein B'' ; × 1 (P08579) ATP-dependent RNA helicase DHX8 × 1 (Q14562) Pre-mRNA-splicing factor SPF27 × 1 (O75934) Pre-mRNA-processing factor 19 × 4 (Q9UMS4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 9 ZINC ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U520_HUMAN
Isoform —
PDB entities 41
Chains and sequence ranges Author chain D; PDBConstruct 1–2136; UniProt 1–2136

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6icz
Deposition date deposition_date2018-09-07
Structure title titleCryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom
Keywords keywordsHuman Post-catalytic Spliceosome, SPLICING; SPLICING
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6icz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6icz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6icz__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)98.63 Å
Rg (electron density)96.91 Å
Total Rg95.33 Å
Atom count97892
Residues14591
Excluded volume1638700 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6icz__assembly_1__model_1 51-meric (51) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (46)

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6. Fold Classification (SCOP + CATH) 51 domains

SCOP 2.08 (30 domains)

Domain ID domain_idd6icza_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczb_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.1 — Sm motif of small nuclear ribonucleoproteins, SNRNP
Domain ID domain_idd6iczc1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.0 — automated matches
Domain ID domain_idd6iczc2
Class classb — All beta proteins
Fold Fold foldb.43 — Reductase/isomerase/elongation factor common domain
Superfamily Superfamily superfamilyb.43.3 — Translation proteins
Family Family familyb.43.3.0 — automated matches
Domain ID domain_idd6iczc3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.11 — EF-G C-terminal domain-like
Family Family familyd.58.11.0 — automated matches
Domain ID domain_idd6iczc4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.14 — Ribosomal protein S5 domain 2-like
Superfamily Superfamily superfamilyd.14.1 — Ribosomal protein S5 domain 2-like
Family Family familyd.14.1.0 — automated matches
Domain ID domain_idd6iczc5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.11 — EF-G C-terminal domain-like
Family Family familyd.58.11.0 — automated matches
Domain ID domain_idd6iczd_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.1 — Sm motif of small nuclear ribonucleoproteins, SNRNP
Domain ID domain_idd6icze_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczf_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczg_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczh_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczi_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.1 — Sm motif of small nuclear ribonucleoproteins, SNRNP
Domain ID domain_idd6iczj_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.1 — Sm motif of small nuclear ribonucleoproteins, SNRNP
Domain ID domain_idd6iczk_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.1 — Sm motif of small nuclear ribonucleoproteins, SNRNP
Domain ID domain_idd6iczl_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczm_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczn_
Class classb — All beta proteins
Fold Fold foldb.38 — Sm-like fold
Superfamily Superfamily superfamilyb.38.1 — Sm-like ribonucleoproteins
Family Family familyb.38.1.0 — automated matches
Domain ID domain_idd6iczo_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.10 — Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily Superfamily superfamilyc.10.2 — L domain-like
Family Family familyc.10.2.4 — U2A'-like
Domain ID domain_idd6iczp_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.7 — RNA-binding domain, RBD, aka RNA recognition motif (RRM)
Family Family familyd.58.7.0 — automated matches
Domain ID domain_idd6iczq1
Class classg — Small proteins
Fold Fold foldg.44 — RING/U-box
Superfamily Superfamily superfamilyg.44.1 — RING/U-box
Family Family familyg.44.1.0 — automated matches
Domain ID domain_idd6iczq2
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.40 — Pre-mRNA splicing factor Prp19 coiled coil domain
Family Family familyh.1.40.0 — automated matches
Domain ID domain_idd6iczr1
Class classg — Small proteins
Fold Fold foldg.44 — RING/U-box
Superfamily Superfamily superfamilyg.44.1 — RING/U-box
Family Family familyg.44.1.0 — automated matches
Domain ID domain_idd6iczr2
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.40 — Pre-mRNA splicing factor Prp19 coiled coil domain
Family Family familyh.1.40.0 — automated matches
Domain ID domain_idd6iczs_
Class classb — All beta proteins
Fold Fold foldb.62 — Cyclophilin-like
Superfamily Superfamily superfamilyb.62.1 — Cyclophilin-like
Family Family familyb.62.1.1 — Cyclophilin (peptidylprolyl isomerase)
Domain ID domain_idd6iczt_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.4 — WD40 repeat-like
Family Family familyb.69.4.0 — automated matches
Domain ID domain_idd6iczu1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd6iczu2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd6iczv_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.232 — Mago nashi protein
Superfamily Superfamily superfamilyd.232.1 — Mago nashi protein
Family Family familyd.232.1.1 — Mago nashi protein
Domain ID domain_idd6iczy_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.7 — RNA-binding domain, RBD, aka RNA recognition motif (RRM)
Family Family familyd.58.7.0 — automated matches

CATH v4.4 (21 domains)

Domain ID domain_id6iczA01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1570 — tt1808, chain A
Homologous superfamily homologous superfamily40 — Pre-mRNA-processing-splicing factor 8 (Prp8), endonuclease domain
Domain ID domain_id6iczE00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id6iczS00
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology100 — Cyclophilin
Homologous superfamily homologous superfamily10 — Cyclophilin-like
Domain ID domain_id6iczV01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily180 —
Domain ID domain_id6icza00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczc00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczd00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6icze00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczf00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczg00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczh00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczj00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczk00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczl00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczm00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczn00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily100 —
Domain ID domain_id6iczo00
Class class3 — Alpha Beta
Architecture architecture80 — Alpha-Beta Horseshoe
Topology topology10 — Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Homologous superfamily homologous superfamily10 — Ribonuclease Inhibitor
Domain ID domain_id6iczp00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily330 — RRM (RNA recognition motif) domain
Domain ID domain_id6iczv00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1560 — Mago nashi protein
Homologous superfamily homologous superfamily10 — Mago nashi
Domain ID domain_id6iczw00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily330 — RRM (RNA recognition motif) domain
Domain ID domain_id6iczy00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily330 — RRM (RNA recognition motif) domain
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7. Citations (1)