7dvq

Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Pre-mRNA-processing-splicing factor 8

OrganismNot specified

UniProt Q6P2Q9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–2335; UniProt 1–2335

116 kDa U5 small nuclear ribonucleoprotein component

OrganismNot specified

UniProt Q15029

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5S1_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–972; UniProt 1–972

U5 small nuclear ribonucleoprotein 200 kDa helicase

OrganismNot specified

UniProt O75643

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U520_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–2136; UniProt 1–2136

U5 small nuclear ribonucleoprotein 40 kDa protein

OrganismNot specified

UniProt Q96DI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR40_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–357; UniProt 1–357

Small nuclear ribonucleoprotein Sm D3

OrganismNot specified

UniProt P62318

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD3_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain a; PDBConstruct 1–126; UniProt 1–126 Author chain h; PDBConstruct 1–126; UniProt 1–126

;Small nuclear ribonucleoprotein-associated proteins B and B' ;

OrganismNot specified

UniProt P14678

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RSMB_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain b; PDBConstruct 1–240; UniProt 1–240 Author chain i; PDBConstruct 1–240; UniProt 1–240

Small nuclear ribonucleoprotein Sm D1

OrganismNot specified

UniProt P62314

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD1_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain c; PDBConstruct 1–119; UniProt 1–119 Author chain j; PDBConstruct 1–119; UniProt 1–119

Small nuclear ribonucleoprotein Sm D2

OrganismNot specified

UniProt P62316

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD2_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain d; PDBConstruct 1–118; UniProt 1–118 Author chain k; PDBConstruct 1–118; UniProt 1–118

Small nuclear ribonucleoprotein F

OrganismNot specified

UniProt P62306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXF_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain f; PDBConstruct 1–86; UniProt 1–86 Author chain m; PDBConstruct 1–86; UniProt 1–86

Small nuclear ribonucleoprotein E

OrganismNot specified

UniProt P62304

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXE_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain e; PDBConstruct 1–92; UniProt 1–92 Author chain l; PDBConstruct 1–92; UniProt 1–92

Small nuclear ribonucleoprotein G

OrganismNot specified

UniProt P62308

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXG_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain g; PDBConstruct 1–76; UniProt 1–76 Author chain n; PDBConstruct 1–76; UniProt 1–76

Sodium channel modifier 1

OrganismNot specified

UniProt Q9BWG6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SCNM1_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain v; PDBConstruct 1–230; UniProt 1–230

Splicing factor 3B subunit 1

OrganismNot specified

UniProt O75533

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B1_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain 1; PDBConstruct 1–1304; UniProt 1–1304

Splicing factor 3B subunit 2

OrganismNot specified

UniProt Q13435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B2_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain 2; PDBConstruct 1–895; UniProt 1–895

Splicing factor 3B subunit 3

OrganismNot specified

UniProt Q15393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B3_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain 3; PDBConstruct 1–1217; UniProt 1–1217

Splicing factor 3B subunit 4

OrganismNot specified

UniProt Q15427

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B4_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain 4; PDBConstruct 1–424; UniProt 1–424

Splicing factor 3B subunit 6

OrganismNot specified

UniProt Q9Y3B4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B6_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain 5; PDBConstruct 1–125; UniProt 1–125

PHD finger-like domain-containing protein 5A

OrganismNot specified

UniProt Q7RTV0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PHF5A_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain 6; PDBConstruct 1–110; UniProt 1–110

Splicing factor 3B subunit 5

OrganismNot specified

UniProt Q9BWJ5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B5_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain 7; PDBConstruct 1–86; UniProt 1–86

Cell division cycle 5-like protein

OrganismNot specified

UniProt Q99459

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC5L_HUMAN
Isoform —
PDB entities 24
Chains and sequence ranges Author chain L; PDBConstruct 1–802; UniProt 1–802

Crooked neck-like protein 1

OrganismNot specified

UniProt Q9BZJ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CRNL1_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain J; PDBConstruct 1–848; UniProt 1–848

Spliceosome-associated protein CWC15 homolog

OrganismNot specified

UniProt Q9P013

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC15_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain P; PDBConstruct 1–229; UniProt 1–229

SNW domain-containing protein 1

OrganismNot specified

UniProt Q13573

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNW1_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain R; PDBConstruct 1–536; UniProt 1–536

Pleiotropic regulator 1

OrganismNot specified

UniProt O43660

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PLRG1_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain T; PDBConstruct 1–514; UniProt 1–514

Smad nuclear-interacting protein 1

OrganismNot specified

UniProt Q8TAD8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNIP1_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain X; PDBConstruct 1–396; UniProt 1–396

RNA-binding motif protein, X-linked 2

OrganismNot specified

UniProt Q9Y388

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBMX2_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain Y; PDBConstruct 1–322; UniProt 1–322

BUD13 homolog

OrganismNot specified

UniProt Q9BRD0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BUD13_HUMAN
Isoform —
PDB entities 31
Chains and sequence ranges Author chain Z; PDBConstruct 1–619; UniProt 1–619

RING-type E3 ubiquitin-protein ligase PPIL2

OrganismNot specified

UniProt Q13356

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPIL2_HUMAN
Isoform —
PDB entities 32
Chains and sequence ranges Author chain 9; PDBConstruct 1–520; UniProt 1–520

Peptidyl-prolyl cis-trans isomerase CWC27 homolog

OrganismNot specified

UniProt Q6UX04

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC27_HUMAN
Isoform —
PDB entities 33
Chains and sequence ranges Author chain z; PDBConstruct 1–472; UniProt 1–472

Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

OrganismNot specified

UniProt O60231

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DHX16_HUMAN
Isoform —
PDB entities 34
Chains and sequence ranges Author chain x; PDBConstruct 1–1041; UniProt 1–1041

G-patch domain and KOW motifs-containing protein

OrganismNot specified

UniProt Q92917

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GPKOW_HUMAN
Isoform —
PDB entities 35
Chains and sequence ranges Author chain y; PDBConstruct 1–476; UniProt 1–476

RING finger protein 113A

OrganismNot specified

UniProt O15541

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name R113A_HUMAN
Isoform —
PDB entities 36
Chains and sequence ranges Author chain M; PDBConstruct 1–343; UniProt 1–343

Serine/arginine repetitive matrix protein 2

OrganismNot specified

UniProt Q9UQ35

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SRRM2_HUMAN
Isoform —
PDB entities 37
Chains and sequence ranges Author chain U; PDBConstruct 1–2752; UniProt 1–2752

Pre-mRNA-splicing factor CWC22 homolog

OrganismNot specified

UniProt Q9HCG8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC22_HUMAN
Isoform —
PDB entities 38
Chains and sequence ranges Author chain V; PDBConstruct 1–908; UniProt 1–908

Serine/arginine repetitive matrix protein 1

OrganismNot specified

UniProt Q8IYB3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SRRM1_HUMAN
Isoform —
PDB entities 39
Chains and sequence ranges Author chain 8; PDBConstruct 1–904; UniProt 1–904

Cysteine-rich PDZ-binding protein

OrganismNot specified

UniProt Q9P021

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) RNA-binding protein 48 × 1 (Q5RL73) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CRIPT_HUMAN
Isoform —
PDB entities 40
Chains and sequence ranges Author chain 0; PDBConstruct 1–101; UniProt 1–101

RNA-binding protein 48

OrganismNot specified

UniProt Q5RL73

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) Armadillo repeat-containing protein 7 × 1 (Q9H6L4) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBM48_HUMAN
Isoform —
PDB entities 41
Chains and sequence ranges Author chain I; PDBConstruct 1–367; UniProt 1–367

Armadillo repeat-containing protein 7

OrganismNot specified

UniProt Q9H6L4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 45 RNA 4 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Small nuclear ribonucleoprotein Sm D3 × 2 (P62318) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 2 (P14678) Small nuclear ribonucleoprotein Sm D1 × 2 (P62314) Small nuclear ribonucleoprotein Sm D2 × 2 (P62316) Small nuclear ribonucleoprotein F × 2 (P62306) Small nuclear ribonucleoprotein E × 2 (P62304) Small nuclear ribonucleoprotein G × 2 (P62308) U6atac snRNA × 1 pre-mRNA × 1 U12 snRNA × 1 Sodium channel modifier 1 × 1 (Q9BWG6) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 2 × 1 (Q13435) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 4 × 1 (Q15427) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Smad nuclear-interacting protein 1 × 1 (Q8TAD8) RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) BUD13 homolog × 1 (Q9BRD0) RING-type E3 ubiquitin-protein ligase PPIL2 × 1 (Q13356) Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 × 1 (O60231) G-patch domain and KOW motifs-containing protein × 1 (Q92917) RING finger protein 113A × 1 (O15541) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Pre-mRNA-splicing factor CWC22 homolog × 1 (Q9HCG8) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) Cysteine-rich PDZ-binding protein × 1 (Q9P021) RNA-binding protein 48 × 1 (Q5RL73) INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 5 POTASSIUM ION × 2 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine × 1 ZINC ION × 7 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARMC7_HUMAN
Isoform —
PDB entities 42
Chains and sequence ranges Author chain K; PDBConstruct 1–198; UniProt 1–198

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7dvq
Deposition date deposition_date2021-01-14
Structure title titleCryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)
Keywords keywords;spliceosome, minor spliceosome, Bact complex, human spliceosome, PPIL2, SCNM1, RBM48-ARMC7 complex, U12-type intron, U6atac snRNA, SPLICING ;; SPLICING
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7dvq__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7dvq__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7dvq__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)87.20 Å
Rg (electron density)85.76 Å
Total Rg84.88 Å
Atom count99900
Residues13597
Excluded volume1722200 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7dvq__assembly_1__model_1 49-meric (49) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (49)

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6. Fold Classification (SCOP + CATH) 6 domains

CATH v4.4 (6 domains)

Domain ID domain_id7dvq301
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id7dvq302
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id7dvq801
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1390 — PWI domain
Homologous superfamily homologous superfamily10 — PWI domain
Domain ID domain_id7dvq901
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology100 — Cyclophilin
Homologous superfamily homologous superfamily10 — Cyclophilin-like
Domain ID domain_id7dvqK01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology10 — Leucine-rich Repeat Variant
Homologous superfamily homologous superfamily10 — Leucine-rich Repeat Variant
Domain ID domain_id7dvqY01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily330 — RRM (RNA recognition motif) domain
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7. Citations (1)