7z6h

Structure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Cell cycle checkpoint control protein RAD9A

Homo sapiens

UniProt Q99638

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAD9A_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–391; UniProt 1–391

Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17

Homo sapiens

UniProt O60671

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAD1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–282; UniProt 1–282 Author chain K; PDBConstruct 1–282; UniProt 1–282

Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17

Homo sapiens

UniProt O75943

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAD17_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 328–1008; UniProt 1–681 Author chain K; PDBConstruct 328–1008; UniProt 1–681

Checkpoint protein HUS1

Homo sapiens

UniProt O60921

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name HUS1_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–280; UniProt 1–280

Replication factor C subunit 4

Homo sapiens

UniProt P35249

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RFC4_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–363; UniProt 1–363

Replication factor C subunit 3

Homo sapiens

UniProt P40938

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 2 × 1 (P35250) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RFC3_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–356; UniProt 1–356

Replication factor C subunit 2

Homo sapiens

UniProt P35250

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 5 × 1 (P40937) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RFC2_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–354; UniProt 1–354

Replication factor C subunit 5

Homo sapiens

UniProt P40937

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 8 DNA 2 Cell cycle checkpoint control protein RAD9A × 1 (Q99638) Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17 × 2 (O60671,O75943) Checkpoint protein HUS1 × 1 (O60921) Replication factor C subunit 4 × 1 (P35249) Replication factor C subunit 3 × 1 (P40938) Replication factor C subunit 2 × 1 (P35250) Hairpin DNA × 2 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RFC5_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 22–360; UniProt 2–340

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7z6h
Deposition date deposition_date2022-03-11
Structure title titleStructure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp
Keywords keywordsDNA damage checkpoint, Rad17-RFC, 9-1-1, DNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7z6h__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7z6h__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7z6h__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)45.22 Å
Rg (electron density)44.50 Å
Total Rg44.83 Å
Atom count20629
Residues2545
Excluded volume367810 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7z6h__assembly_1__model_1 decameric (10) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (9)

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6. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id7z6hE01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id7z6hE02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology272 — Zinc Finger, Delta Prime; domain 3
Homologous superfamily homologous superfamily10 —
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7. Citations (1)