8oop

CryoEM Structure INO80core Hexasome complex composite model state2

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

RuvB-like protein 1

Thermochaetoides thermophila

UniProt G0RYI5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G0RYI5_CHATD
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–462; UniProt 1–462 Author chain B; PDBConstruct 1–462; UniProt 1–462 Author chain C; PDBConstruct 1–462; UniProt 1–462

RuvB-like protein 2

Thermochaetoides thermophila

UniProt G0RYC2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G0RYC2_CHATD
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–488; UniProt 1–488 Author chain E; PDBConstruct 1–488; UniProt 1–488 Author chain F; PDBConstruct 1–488; UniProt 1–488

Ino eighty subunit 2

Thermochaetoides thermophila

UniProt G0RY01

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G0RY01_CHATD
Isoform —
PDB entities 4
Chains and sequence ranges Author chain H; PDBConstruct 1–492; UniProt 1–492

Chromatin-remodeling complex subunit IES6

Thermochaetoides thermophila

UniProt G0S590

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G0S590_CHATD
Isoform —
PDB entities 5
Chains and sequence ranges Author chain I; PDBConstruct 1–219; UniProt 1–219

Actin-related protein 5

Thermochaetoides thermophila

UniProt G0S589

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G0S589_CHATD
Isoform —
PDB entities 6
Chains and sequence ranges Author chain J; PDBConstruct 1–769; UniProt 98–866

Histone H3.1

Homo sapiens

UniProt P68431

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H31_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain M; PDBConstruct 1–135; UniProt 2–136 Author chain Q; PDBConstruct 1–135; UniProt 2–136

Histone H4

Homo sapiens

UniProt P62805

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H2A × 1 (Q93077) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H4_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain N; PDBConstruct 1–102; UniProt 2–103 Author chain R; PDBConstruct 1–102; UniProt 2–103

Histone H2A

Homo sapiens

UniProt Q93077

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2B × 1 (P62807) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2A1C_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain O; PDBConstruct 1–129; UniProt 2–130

Histone H2B

Homo sapiens

UniProt P62807

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 16 DNA 2 RuvB-like protein 1 × 3 (G0RYI5) RuvB-like protein 2 × 3 (G0RYC2) Chromatin-remodeling ATPase Ino80 × 1 Ino eighty subunit 2 × 1 (G0RY01) Chromatin-remodeling complex subunit IES6 × 1 (G0S590) Actin-related protein 5 × 1 (G0S589) DNA strand 1 × 1 DNA Strand 2 × 1 Histone H3.1 × 2 (P68431) Histone H4 × 2 (P62805) Histone H2A × 1 (Q93077) ADENOSINE-5'-DIPHOSPHATE × 7 MAGNESIUM ION × 2 TETRAFLUOROALUMINATE ION × 1 ADENOSINE-5'-TRIPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2B1C_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain P; PDBConstruct 1–125; UniProt 2–126

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8oop
Deposition date deposition_date2023-04-05
Structure title titleCryoEM Structure INO80core Hexasome complex composite model state2
Keywords keywordsATP-dependent chromatin remodeler, DNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8oop__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8oop__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8oop__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)60.93 Å
Rg (electron density)59.68 Å
Total Rg59.88 Å
Atom count40747
Residues4894
Excluded volume710620 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8oop__assembly_1__model_1 18-meric (18) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (16)

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7. Citations (5)