|
1MDU
Crystal structure of the chicken actin trimer complexed with human gelsolin segment 1 (GS-1)
Deposited 2002-08-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 12
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;PEG 3350, tris, calcium chloride, magnesium chloride, ADP, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å
R-free 0.233
|
|
1MDU
Crystal structure of the chicken actin trimer complexed with human gelsolin segment 1 (GS-1)
Deposited 2002-08-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain E
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 9
ATP ADENOSINE-5'-TRIPHOSPHATE × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;277 K;PEG 3350, tris, calcium chloride, magnesium chloride, ADP, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å
R-free 0.233
|
|
5YU8
Cofilin decorated actin filament
Deposited 2017-11-21
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
Chain E
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
6D8C
Cryo-EM structure of FLNaABD E254K bound to phalloidin-stabilized F-actin
Deposited 2018-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: tridecameric
|
Chain H
3–377(375 aa)
Chain J
3–377(375 aa)
Chain K
3–377(375 aa)
Chain L
3–377(375 aa)
Chain M
3–377(375 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å
|
|
6DJM
Cryo-EM structure of AMPPNP-actin filaments
Deposited 2018-05-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
6DJN
Cryo-EM structure of ADP-Pi-actin filaments
Deposited 2018-05-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 4
PO4 PHOSPHATE ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
6DJO
Cryo-EM structure of ADP-actin filaments
Deposited 2018-05-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
6M5G
F-actin-Utrophin complex
Deposited 2020-03-10
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
|
Not recorded
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3 seconds
|
Resolution 3.60 Å
|
|
6UPV
Alpha-E-catenin ABD-F-actin complex
Deposited 2019-10-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
Chain E
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
6UPW
Metavinculin ABD-F-actin complex
Deposited 2019-10-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
Chain E
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
6X5Z
Bovine Cardiac Myosin in Complex with Chicken Skeletal Actin and Human Cardiac Tropomyosin in the Rigor State
Deposited 2020-05-27
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;Thin filaments were reconstituted by first mixing F-actin and tropomyosin to final concentrations of 10 uM actin and 7 uM tropomyosin. Just before applying 1.5 uL actin-tropomyosin to a freshly glow discharged holey-carbon grid, the surfactant octyl B-D-glucopyranoside was added to the protein solution to a concentration of 12 nM. The grid sample was manually blotted for 1 second and a 1.5 uL drop of 7.5 uM myosin-S1 sub-fragment was then applied to the blotted grid sample. The sample was immediately blotted for 4 seconds and plunge-frozen in liquid ethane.
|
Resolution 4.24 Å
|
|
7BT7
F-actin-ADP complex structure
Deposited 2020-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
|
Not recorded
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3.5 seconds
|
Resolution 3.80 Å
|
|
7BTE
Lifeact-F-actin complex
Deposited 2020-04-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–377(377 aa)
Chain C
1–377(377 aa)
Chain E
1–377(377 aa)
Chain G
1–377(377 aa)
Chain I
1–377(377 aa)
|
Not recorded
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;50mM KCl,1mM MgCl2,0.2mM EGTA, 10mM Imidazole buffer pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3.5 seconds
|
Resolution 4.20 Å
|
|
7BTI
Phalloidin bound F-actin complex
Deposited 2020-04-01
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
|
Not recorded
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;50mM KCl,1mM MgCl2,0.2mM EGTA, 10mM Imidazole buffer pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3.5 seconds
|
Resolution 3.60 Å
|
|
7K20
Cryo-EM structure of pyrene-labeled ADP-actin filaments
Deposited 2020-09-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 4
1T4 N-(pyren-1-yl)acetamide × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
7K21
Cryo-EM structure of pyrene-labeled ADP-Pi-actin filaments
Deposited 2020-09-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 4
PO4 PHOSPHATE ION × 4
1T4 N-(pyren-1-yl)acetamide × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7KCH
Myosin XI-F-actin complex
Deposited 2020-10-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain G
1–377(377 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0,50 mM KCl,1mM MgCl2, 1mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.33 Å
|
|
7R8V
Cryo-EM structure of the ADP state actin filament
Deposited 2021-06-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
7–377(371 aa)
Chain B
7–377(371 aa)
Chain C
7–377(371 aa)
Chain D
7–377(371 aa)
Chain E
7–377(371 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.82 Å
|
|
7R91
cryo-EM structure of the rigor state wild type myosin-15-F-actin complex
Deposited 2021-06-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
7–377(371 aa)
Chain B
7–377(371 aa)
Chain C
7–377(371 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.83 Å
|
|
7R94
T-Plastin-F-actin complex
Deposited 2021-06-28
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
7RB8
cryo-EM structure of the ADP state wild type myosin-15-F-actin complex
Deposited 2021-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
5–377(373 aa)
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 4
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å
|
|
7RB9
Cryo-EM structure of the rigor state Jordan myosin-15-F-actin complex
Deposited 2021-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
5–377(373 aa)
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.76 Å
|
|
7SX8
T-Plastin-F-actin complex, parallel bundled state
Deposited 2021-11-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain E
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.00 Å
|
|
7SX9
T-Plastin-F-actin complex, anti-parallel bundled state
Deposited 2021-11-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain E
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 10.00 Å
|
|
7SXA
T-Plastin-F-actin complex, pre-bundling intermediate state
Deposited 2021-11-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.87 Å
|
|
7UDT
cryo-EM structure of the rigor state wild type myosin-15-F-actin complex (symmetry expansion and re-centering)
Deposited 2022-03-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain A
5–377(373 aa)
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.17 Å
|
|
7UDU
cryo-EM structure of the ADP state wild type myosin-15-F-actin complex (symmetry expansion and re-centering)
Deposited 2022-03-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain A
5–377(373 aa)
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 4
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;10 mM imidazole pH 7.0, 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.5 mM DTT, 0.01% NaN3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.15 Å
|
|
7W4Z
Crystal structure of fragmin domain-1 in complex with actin (AMPPNP-form)
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 1
PO4 PHOSPHATE ION × 2
EDO 1,2-ETHANEDIOL × 3
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;50 mM Na2HPO4, 19% PEG3350
|
Resolution 1.15 Å
R-free 0.158
|
|
7W50
Crystal structure of fragmin domain-1 in complex with actin (ADP-Pi-form)
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
PO4 PHOSPHATE ION × 3
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 3
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM Na2HPO4, 18% PEG3350
|
Resolution 1.15 Å
R-free 0.162
|
|
7W51
Crystal structure of fragmin domain-1 in complex with actin (ADP-form)
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 5
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M HEPES-NaOH, pH 8.0, 16% PEG3350
|
Resolution 1.20 Å
R-free 0.176
|
|
7W52
Crystal structure of fragmin domain-1 (15-160) in complex with actin
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
CA CALCIUM ION × 3
ACT ACETATE ION × 3
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 4.5, 0.1 M calcium acetate, and 7% PEG3350
|
Resolution 2.00 Å
R-free 0.246
|
|
7W52
Crystal structure of fragmin domain-1 (15-160) in complex with actin
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
CA CALCIUM ION × 3
ACT ACETATE ION × 1
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 4.5, 0.1 M calcium acetate, and 7% PEG3350
|
Resolution 2.00 Å
R-free 0.246
|
|
7W52
Crystal structure of fragmin domain-1 (15-160) in complex with actin
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
CA CALCIUM ION × 3
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 4.5, 0.1 M calcium acetate, and 7% PEG3350
|
Resolution 2.00 Å
R-free 0.246
|
|
7W52
Crystal structure of fragmin domain-1 (15-160) in complex with actin
Deposited 2021-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
CA CALCIUM ION × 3
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 4.5, 0.1 M calcium acetate, and 7% PEG3350
|
Resolution 2.00 Å
R-free 0.246
|
|
7YNE
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 3
ACT ACETATE ION × 3
NA SODIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 5.0, 0.1 M calcium acetate, and 12% PEG4000
|
Resolution 2.70 Å
R-free 0.308
|
|
7YNE
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 3
ACT ACETATE ION × 1
NA SODIUM ION × 1
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 5.0, 0.1 M calcium acetate, and 12% PEG4000
|
Resolution 2.70 Å
R-free 0.308
|
|
7YNE
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 5.0, 0.1 M calcium acetate, and 12% PEG4000
|
Resolution 2.70 Å
R-free 0.308
|
|
7YNE
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M sodium acetate, pH 5.0, 0.1 M calcium acetate, and 12% PEG4000
|
Resolution 2.70 Å
R-free 0.308
|
|
8C4C
F-actin decorated by SipA497-669
Deposited 2023-01-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 8
PO4 PHOSPHATE ION × 8
MG MAGNESIUM ION × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;5 mM Tris buffer, pH 7.5, 0.1 mM DTT, 0.2 mM ATP, 0.2 mM EGTA and 0.05 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.70 Å
|
|
8C4E
F-actin decorated by SipA426-685
Deposited 2023-01-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 8
PO4 PHOSPHATE ION × 8
MG MAGNESIUM ION × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;5 mM Tris buffer, pH 7.5, 0.1 mM DTT, 0.2 mM ATP, 0.2 mM EGTA and 0.05 mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.60 Å
|
|
8D13
Helical ADP-F-actin
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.43 Å
|
|
8D14
Helical ADP-Pi-F-actin
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
PO4 PHOSPHATE ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.51 Å
|
|
8D15
Bent ADP-F-actin
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 7
MG MAGNESIUM ION × 7
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.61 Å
|
|
8D16
Bent ADP-Pi-F-actin
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 7
PDB declaration: heptameric
|
Chain A
7–377(371 aa)
Chain B
7–377(371 aa)
Chain C
7–377(371 aa)
Chain D
7–377(371 aa)
Chain E
7–377(371 aa)
Chain F
7–377(371 aa)
Chain G
7–377(371 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 7
MG MAGNESIUM ION × 7
PO4 PHOSPHATE ION × 7
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.71 Å
|
|
8D17
Straight ADP-F-actin 1
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 7
MG MAGNESIUM ION × 7
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.69 Å
|
|
8D18
Straight ADP-F-actin 2
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–377(377 aa)
Chain B
1–377(377 aa)
Chain C
1–377(377 aa)
Chain D
1–377(377 aa)
Chain E
1–377(377 aa)
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 7
MG MAGNESIUM ION × 7
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.66 Å
|
|
8E9B
Cryo-EM structure of S. pombe Arp2/3 complex in the branch junction
Deposited 2022-08-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain H
3–377(375 aa)
Chain I
3–377(375 aa)
Chain M
3–377(375 aa)
Chain N
3–377(375 aa)
Chain O
3–377(375 aa)
Chain P
3–377(375 aa)
Chain Q
3–377(375 aa)
Chain R
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 10
ADP ADENOSINE-5'-DIPHOSPHATE × 9
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8R3H
Phalloidin bound F-actin
Deposited 2023-11-09
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
Chain I
1–377(377 aa)
Chain J
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.13 Å
|
|
8VFM
Salmonella effector protein SipA decorated actin filament
Deposited 2023-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain J
1–377(377 aa)
Chain L
1–377(377 aa)
Chain M
1–377(377 aa)
Chain N
1–377(377 aa)
Chain R
1–377(377 aa)
Chain S
1–377(377 aa)
Chain U
1–377(377 aa)
Chain W
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 8
ADP ADENOSINE-5'-DIPHOSPHATE × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
8VO5
Cryo-EM structure of fascin bound to F-actin (actin binding site 1)
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
Chain D
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8VO6
Cryo-EM structure of fascin bound to F-actin (actin binding site 2)
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain E
5–377(373 aa)
Chain F
5–377(373 aa)
Chain G
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8VO7
Cryo-EM structure of fascin crosslinked F-actin
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
Chain D
5–377(373 aa)
Chain E
5–377(373 aa)
Chain F
5–377(373 aa)
Chain G
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8VO8
Cryo-EM structure of fascin crosslinked F-actin (Eigen_left)
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
Chain D
5–377(373 aa)
Chain E
5–377(373 aa)
Chain F
5–377(373 aa)
Chain G
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
8VO9
Cryo-EM structure of fascin crosslinked F-actin (Eigen_middle)
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
Chain D
5–377(373 aa)
Chain E
5–377(373 aa)
Chain F
5–377(373 aa)
Chain G
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8VOA
Cryo-EM structure of fascin crosslinked F-actin (Eigen_right)
Deposited 2024-01-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain B
5–377(373 aa)
Chain C
5–377(373 aa)
Chain D
5–377(373 aa)
Chain E
5–377(373 aa)
Chain F
5–377(373 aa)
Chain G
5–377(373 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.00 Å
|
|
9DVA
F-actin binding interface of alpha-E-catenin ABD (cadherin-catenin complex) and afadin
Deposited 2024-10-07
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
3–377(375 aa)
Chain B
3–377(375 aa)
Chain C
3–377(375 aa)
Chain D
3–377(375 aa)
Chain E
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 5
MG MAGNESIUM ION × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9JUS
Structure of villin bound to an actin trimer
Deposited 2024-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain f
1–377(377 aa)
Chain g
1–377(377 aa)
Chain p
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
CA CALCIUM ION × 8
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293.15 K;0.1 M Bis-Tris propane, pH 6.5
10% PEG 3350
0.2 M KSCN
5 mM CaCl2/MgCl2
|
Resolution 2.70 Å
R-free 0.226
|
|
9JUS
Structure of villin bound to an actin trimer
Deposited 2024-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain P
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 3
CA CALCIUM ION × 8
SCN THIOCYANATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293.15 K;0.1 M Bis-Tris propane, pH 6.5
10% PEG 3350
0.2 M KSCN
5 mM CaCl2/MgCl2
|
Resolution 2.70 Å
R-free 0.226
|
|
9JVT
Structure of the C-terminal 4 domains (V4-V6-HP) villin bound to an actin
Deposited 2024-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain g
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Tris, pH 8.0
50% PEG 400
0.2 M Li2SO4
1 mM CaCl2
|
Resolution 3.29 Å
R-free 0.268
|
|
9JVT
Structure of the C-terminal 4 domains (V4-V6-HP) villin bound to an actin
Deposited 2024-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Tris, pH 8.0
50% PEG 400
0.2 M Li2SO4
1 mM CaCl2
|
Resolution 3.29 Å
R-free 0.268
|
|
9JW0
Structure of the N-terminal 3 domains (V1-V3) villin bound to actin
Deposited 2024-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–377(377 aa)
|
Not recorded
|
CA CALCIUM ION × 5
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane, pH 8.5, 20% PEG 3350, 0.2 M sodium nitrate, 1 mM CaCl2
|
Resolution 2.69 Å
R-free 0.259
|
|
9L2N
Crystal structure of Cytochalasin D bound to a filamentous conformation actin
Deposited 2024-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
3–377(375 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
PO4 PHOSPHATE ION × 3
MG MAGNESIUM ION × 1
CY9 (3S,3aR,4S,6S,6aR,7E,10S,12R,13E,15R,15aR)-3-benzyl-6,12-dihydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2,3,3a,4,5,6,6a,9,10,11,12,15-dodecahydro-1H-cycloundeca[d]isoindol-15-yl acetate × 1
CA CALCIUM ION × 2
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;17% (w/v) PEG3350 and 20 mM Na2HPO4
|
Resolution 1.70 Å
R-free 0.204
|
|
9M5E
Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Deposited 2025-03-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain I
1–377(377 aa)
Chain J
1–377(377 aa)
Chain K
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.55 Å
|
|
9M64
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Deposited 2025-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain I
1–377(377 aa)
Chain J
1–377(377 aa)
Chain K
1–377(377 aa)
Chain L
1–377(377 aa)
Chain i
1–377(377 aa)
Chain j
1–377(377 aa)
Chain k
1–377(377 aa)
Chain l
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 12
MG MAGNESIUM ION × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9QGK
F-actin decorated by ITPKA
Deposited 2025-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: 13-meric
|
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
Chain I
1–377(377 aa)
Chain J
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.97 Å
|
|
9SGK
F-actin in complex with USP54 M1 actin binding motif
Deposited 2025-08-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 10
PDB declaration: decameric
|
Chain F
1–377(377 aa)
Chain G
1–377(377 aa)
Chain H
1–377(377 aa)
Chain I
1–377(377 aa)
Chain J
1–377(377 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|