9d4u

Core particle assembly intermediate Capless 13S purified from Saccharomyces cerevisiae

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Proteasome subunit alpha type-1

Saccharomyces cerevisiae

UniProt P21243

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA1_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–252; UniProt 1–252

Proteasome subunit alpha type-2

Saccharomyces cerevisiae

UniProt P23639

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA2_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–250; UniProt 1–250

Proteasome subunit alpha type-3

Saccharomyces cerevisiae

UniProt P23638

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA3_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–258; UniProt 1–258

Proteasome subunit alpha type-4

Saccharomyces cerevisiae

UniProt P40303

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA4_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–254; UniProt 1–254

Proteasome subunit alpha type-5

Saccharomyces cerevisiae

UniProt P32379

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA5_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–260; UniProt 1–260

Proteasome subunit alpha type-6

Saccharomyces cerevisiae

UniProt P40302

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA6_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–234; UniProt 1–234

Probable proteasome subunit alpha type-7

Saccharomyces cerevisiae

UniProt P21242

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA7_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–288; UniProt 1–288

Proteasome subunit beta type-2

Saccharomyces cerevisiae

UniProt P25043

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB2_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–261; UniProt 1–261

Proteasome subunit beta type-3

Saccharomyces cerevisiae

UniProt P25451

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-4 × 1 (P22141) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB3_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–205; UniProt 1–205

Proteasome subunit beta type-4

Saccharomyces cerevisiae

UniProt P22141

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome maturation factor UMP1 × 1 (P38293) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB4_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain K; PDBConstruct 1–198; UniProt 1–198

Proteasome maturation factor UMP1

Saccharomyces cerevisiae

UniProt P38293

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name UMP1_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain P; PDBConstruct 1–148; UniProt 1–148

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9d4u
Deposition date deposition_date2024-08-13
Structure title titleCore particle assembly intermediate Capless 13S purified from Saccharomyces cerevisiae
Keywords keywordsProteasome, Cryo-EM, Assembly, assembly chaperone, Blm10, PA200, Blm10-13S, Pba1, CP, HYDROLASE; HYDROLASE
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9d4u__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9d4u__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9d4u__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)44.14 Å
Rg (electron density)43.54 Å
Total Rg43.95 Å
Atom count35217
Residues2273
Excluded volume314230 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9d4u__assembly_1__model_1 11-meric (11) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (11)

▶

7. Citations (1)