9h60

Leishmania braziliensis ISP2 in complex with bovine alpha-chymotrypsin

Method: X-RAY DIFFRACTION Dmax: 108.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Ecotin-like protein 2

Leishmania braziliensis

UniProt A4H823

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 1–154 Chain C; UniProt 1–154 Not recorded Chymotrypsinogen A × 2 (P00766) PEG DI(HYDROXYETHYL)ETHER × 7 ACT ACETATE ION × 15 GOL GLYCEROL × 9 EDO 1,2-ETHANEDIOL × 8 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 5.5;298 K;0.2 M Potassium bromide 0.1 M Sodium acetate pH 5.5 25 % w/v PEG 2000 MME Resolution 1.90 Å R-free 0.217

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name ECOT2_LEIBR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–158; UniProt 1–154 Author chain C; PDBConstruct 5–158; UniProt 1–154

Chymotrypsinogen A

Bos taurus

UniProt P00766

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 1–245 Chain D; UniProt 1–245 Not recorded Ecotin-like protein 2 × 2 (A4H823) PEG DI(HYDROXYETHYL)ETHER × 7 ACT ACETATE ION × 15 GOL GLYCEROL × 9 EDO 1,2-ETHANEDIOL × 8 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 5.5;298 K;0.2 M Potassium bromide 0.1 M Sodium acetate pH 5.5 25 % w/v PEG 2000 MME Resolution 1.90 Å R-free 0.217

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

91 other PDB entries and 177 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CTRA_BOVIN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–245; UniProt 1–245 Author chain D; PDBConstruct 1–245; UniProt 1–245

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9h60

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9h60
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9h60
Deposition date deposition_date2024-10-23
最后修订 last_revision2026-05-06
Structure title titleLeishmania braziliensis ISP2 in complex with bovine alpha-chymotrypsin
Keywords keywordsecotin-like inhibitor, complex, protease, Leishmania, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier32.08
Radius of gyration Rg (electron density) rg_electron31.74
Forward intensity I(0) i0105298000.00
Molecular weight molecular_weight82649.0 kDa
Excluded volume excluded_volume103720 ų
Envelope volume envelope_volume125860 ų
Hydration-shell volume shell_volume34460 ų
Envelope diameter envelope_diameter115.1
Shell Rg shell_rg37.43
Envelope Rg envelope_rg31.42
Shape Rg shape_rg31.73
Total Rg total_rg32.22
Total atoms total_atoms11571
Residues n_residues757
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax108.7
Rg (real space) rg_real32.36
Rg uncertainty (real space) rg_real_error0.87
I(0) (real space) i0_real1.0530e+08
I(0) uncertainty (real space) i0_real_error1.5750e+06
Rg (reciprocal space) rg_reciprocal32.24
I(0) (reciprocal space) i0_reciprocal105300000.0000
Solution quality estimate total_estimate0.8434
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary28.9
Skewness Skewness skewness0.503
Kurtosis Kurtosis kurtosis-0.387
Angular range angular_range— – 0.2450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha49100000.0000
Real-space data points n_real_points50
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.773; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.825; Smooth: 0.816

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (8)

8. Citations (1)

9. Files and Curves (10)