9pvy
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9pvy |
| deposition_date | 2025-08-04 |
| title | Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient |
| keywords | Apolipoprotein A-I, AApoAI, L90P, Amyloidosis., PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 27.63 Å |
| rg_electron | 27.16 Å |
| i0 | 71194400.00 |
| molecular_weight | 67896.0 kDa |
| excluded_volume | 85468 ų |
| envelope_volume | 97305 ų |
| shell_volume | 30283 ų |
| envelope_diameter | 95.5 Å |
| shell_rg | 34.42 Å |
| envelope_rg | 27.62 Å |
| shape_rg | 27.22 Å |
| total_rg | 27.68 Å |
| total_atoms | 4810 |
| n_residues | 600 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 90.8 Å |
| rg_real | 27.66 Å |
| rg_real_error | 0.67 Å |
| i0_real | 7.1190e+07 |
| i0_real_error | 1.1690e+06 |
| rg_reciprocal | 27.65 Å |
| i0_reciprocal | 71190000.0000 |
| total_estimate | 0.8869 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 89.2 Å |
| skewness | 0.344 |
| kurtosis | -0.425 |
| angular_range | — – 0.2850 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 20020000.0000 |
| n_real_points | 58 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.890; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.886 |