9pw3
Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9pw3 |
| deposition_date | 2025-08-04 |
| title | Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient |
| keywords | Apolipoprotein A-I, AApoAI, R173P, kidney, amyloidosis., PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 26.98 Å |
| rg_electron | 26.55 Å |
| i0 | 67075200.00 |
| molecular_weight | 65623.0 kDa |
| excluded_volume | 82630 ų |
| envelope_volume | 93857 ų |
| shell_volume | 29710 ų |
| envelope_diameter | 95.9 Å |
| shell_rg | 33.98 Å |
| envelope_rg | 27.10 Å |
| shape_rg | 26.61 Å |
| total_rg | 27.10 Å |
| total_atoms | 4650 |
| n_residues | 580 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 91.5 Å |
| rg_real | 26.99 Å |
| rg_real_error | 0.67 Å |
| i0_real | 6.7080e+07 |
| i0_real_error | 8.5960e+05 |
| rg_reciprocal | 26.99 Å |
| i0_reciprocal | 67080000.0000 |
| total_estimate | 0.8785 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 27.9 Å |
| skewness | 0.337 |
| kurtosis | -0.434 |
| angular_range | — – 0.2950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 19790000.0000 |
| n_real_points | 60 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.838; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.916; Smooth: 0.984 |