Cryo-EM Structure of G6PT1 bound with GlcN6P

Method: ELECTRON MICROSCOPY D_max: 71.6 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9ugy
deposition_date	2025-04-14
title	Cryo-EM Structure of G6PT1 bound with GlcN6P
keywords	G6P, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.52 Å
rg_electron	21.71 Å
i0	30282100.00
molecular_weight	45135.0 kDa
excluded_volume	57668 Å³
envelope_volume	66243 Å³
shell_volume	25188 Å³
envelope_diameter	76.6 Å
shell_rg	28.83 Å
envelope_rg	22.00 Å
shape_rg	21.71 Å
total_rg	22.65 Å
total_atoms	3183
n_residues	415
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	71.6 Å
rg_real	22.44 Å
rg_real_error	0.33 Å
i0_real	3.0280e+07
i0_real_error	3.7180e+05
rg_reciprocal	22.46 Å
i0_reciprocal	30280000.0000
total_estimate	0.9025
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	27.1 Å
skewness	0.240
kurtosis	-0.432
angular_range	— – 0.3550 Å⁻¹
current_alpha	0.0000
highest_alpha	6801000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.915; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.985

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.500 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.50 Å
resolution_method	—
num_particles	222901

description	Glucose-6-phosphate exchanger SLC37A4
formula_weight	46391.8 kDa
src_method	man
entity_count	1

Cryo-EM Structure of G6PT1 bound with GlcN6P

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

description	2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
formula_weight	259.2 kDa
src_method	syn
entity_count	1

fit	/app/data/saxs_computation/ug/9ugy/9ugy.fit
pddf	/app/data/pr_computation/ug/9ugy/9ugy.pr.out
profile	/app/data/saxs_computation/ug/9ugy/9ugy.dat

type	polypeptide(L)
strand_id	A
atom_count	3183