Cryo-EM Structure of Apo-G6PT1

Method: ELECTRON MICROSCOPY D_max: 72.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9ugu
deposition_date	2025-04-13
title	Cryo-EM Structure of Apo-G6PT1
keywords	G6P, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.67 Å
rg_electron	21.84 Å
i0	29663000.00
molecular_weight	45007.0 kDa
excluded_volume	57576 Å³
envelope_volume	65997 Å³
shell_volume	24988 Å³
envelope_diameter	75.5 Å
shell_rg	28.81 Å
envelope_rg	22.07 Å
shape_rg	21.83 Å
total_rg	22.77 Å
total_atoms	3175
n_residues	416
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	72.0 Å
rg_real	22.59 Å
rg_real_error	0.43 Å
i0_real	2.9660e+07
i0_real_error	3.9300e+05
rg_reciprocal	22.61 Å
i0_reciprocal	29660000.0000
total_estimate	0.8284
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.3 Å
skewness	0.212
kurtosis	-0.466
angular_range	— – 0.3500 Å⁻¹
current_alpha	0.0000
highest_alpha	5610000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.922; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.070 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.07 Å
resolution_method	—
num_particles	107077

description	Glucose-6-phosphate exchanger SLC37A4
formula_weight	46391.8 kDa
src_method	man
entity_count	1

Cryo-EM Structure of Apo-G6PT1

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

fit	/app/data/saxs_computation/ug/9ugu/9ugu.fit
pddf	/app/data/pr_computation/ug/9ugu/9ugu.pr.out
profile	/app/data/saxs_computation/ug/9ugu/9ugu.dat

type	polypeptide(L)
strand_id	A
atom_count	3175