9vzq

Crystal structure of RORgamma in complex with novel inverse agonist

Method: X-RAY DIFFRACTION Dmax: 65.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Nuclear receptor ROR-gamma

Homo sapiens

UniProt P51449

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 262–507 Not recorded Nuclear receptor coactivator 1 × 1 (Q15788) (25R)-14beta,17beta-spirost-5-en-3beta-ol × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.18 Å R-free 0.251

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

161 other PDB entries and 267 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RORG_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–246; UniProt 262–507

Nuclear receptor coactivator 1

Homo sapiens

UniProt Q15788

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 1429–1441 Not recorded Nuclear receptor ROR-gamma × 1 (P51449) (25R)-14beta,17beta-spirost-5-en-3beta-ol × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.18 Å R-free 0.251

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

204 other PDB entries and 251 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name NCOA1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–13; UniProt 1429–1441

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9vzq

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9vzq
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id9vzq
Deposition date deposition_date2025-07-23
最后修订 last_revision2026-06-03
Structure title titleCrystal structure of RORgamma in complex with novel inverse agonist
Keywords keywordsinverse agonist, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.00
Radius of gyration Rg (electron density) rg_electron18.71
Forward intensity I(0) i015046700.00
Molecular weight molecular_weight29821.0 kDa
Excluded volume excluded_volume37659 ų
Envelope volume envelope_volume43230 ų
Hydration-shell volume shell_volume19413 ų
Envelope diameter envelope_diameter66.1
Shell Rg shell_rg24.86
Envelope Rg envelope_rg18.91
Shape Rg shape_rg18.70
Total Rg total_rg19.65
Total atoms total_atoms2097
Residues n_residues253
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax65.0
Rg (real space) rg_real19.91
Rg uncertainty (real space) rg_real_error0.36
I(0) (real space) i0_real1.5050e+07
I(0) uncertainty (real space) i0_real_error1.9420e+05
Rg (reciprocal space) rg_reciprocal19.93
I(0) (reciprocal space) i0_reciprocal15050000.0000
Solution quality estimate total_estimate0.8900
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.1
Skewness Skewness skewness0.221
Kurtosis Kurtosis kurtosis-0.323
Angular range angular_range— – 0.3950 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2641000.0000
Real-space data points n_real_points71
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.857; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.998

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)