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9y9z

Cryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)

Method: ELECTRON MICROSCOPY Dmax: 529.1 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9y9z

P(r) Distribution

P(r) distribution for 9y9z

1. Structure Basics

entry_id9y9z
deposition_date2025-09-15
titleCryo-EM structure of conoid fiber from Toxoplasma gondii (24-nm repeat)
keywords;Tubulin, Microtubule, Microtubule Inner Protein, Microtubule-associated Protein, Toxoplasma gondii, conoid, conoid fiber, STRUCTURAL PROTEIN ;; STRUCTURAL PROTEIN
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier
rg_electron193.10
i01870180000000.00
molecular_weight11486000.0 kDa
excluded_volume14269000 ų
envelope_volume26153000 ų
shell_volume1111300 ų
envelope_diameter669.3
shell_rg174.40
envelope_rg191.30
shape_rg193.10
total_rg193.00
total_atoms806376
n_residues100974
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax529.1
rg_real182.90
rg_real_error2.27
i0_real1.7530e+12
i0_real_error4.7530e+10
rg_reciprocal155.20
i0_reciprocal1584000000000.0000
total_estimate0.9004
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary198.4
skewness0.346
kurtosis-0.644
angular_range— – 0.0400 −1
current_alpha2.6090
highest_alpha45390000000.0000
n_real_points9
gnom_version4.1.3
quality_criteria AN1: 0.621; Oscil: 0.997; Stabil: 0.918; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.001

4. Crystallography & Experiment

5. Entities & Polymer Info (17)

6. Citations (1)

7. Files & Curves (10)